Wall clock time and date at job start Tue Mar 31 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47091 * 2 1 4 4 C 1.50704 * 109.47216 * 119.99942 * 2 1 3 5 5 H 1.07994 * 119.99866 * 120.00491 * 4 2 1 6 6 C 1.37878 * 119.99809 * 300.00406 * 4 2 1 7 7 N 1.31513 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99657 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47390 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46845 * 119.99982 * 8 6 4 11 11 H 1.48500 * 109.47086 * 239.99737 * 8 6 4 12 12 C 1.50700 * 109.47251 * 239.99985 * 2 1 3 13 13 O 1.21289 * 120.00135 * 239.99636 * 12 2 1 14 14 N 1.34780 * 119.99730 * 59.99817 * 12 2 1 15 15 C 1.40389 * 119.99880 * 184.85672 * 14 12 2 16 16 C 1.40624 * 120.08851 * 302.56327 * 15 14 12 17 17 C 1.36347 * 119.24369 * 180.02562 * 16 15 14 18 18 C 1.40498 * 119.39685 * 359.75272 * 17 16 15 19 19 O 1.22098 * 119.92896 * 180.27395 * 18 17 16 20 20 N 1.34632 * 120.15185 * 0.49834 * 18 17 16 21 21 C 1.46507 * 119.60647 * 179.77545 * 20 18 17 22 22 C 1.52997 * 109.47242 * 269.72472 * 21 20 18 23 23 O 1.42904 * 109.47055 * 64.99930 * 22 21 20 24 24 C 1.35887 * 120.08231 * 122.58358 * 15 14 12 25 25 H 1.09002 * 109.47615 * 299.99734 * 1 2 3 26 26 H 1.09004 * 109.47448 * 60.00173 * 1 2 3 27 27 H 1.09005 * 109.47091 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99970 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00341 * 4.86279 * 14 12 2 30 30 H 1.08007 * 120.37949 * 0.03785 * 16 15 14 31 31 H 1.08003 * 120.30229 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46621 * 149.72794 * 21 20 18 33 33 H 1.08990 * 109.47400 * 29.72655 * 21 20 18 34 34 H 1.09002 * 109.47210 * 305.00417 * 22 21 20 35 35 H 1.08998 * 109.47641 * 185.00431 * 22 21 20 36 36 H 0.96703 * 113.99599 * 180.02562 * 23 22 21 37 37 H 1.07997 * 119.70379 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5867 4.8160 12 6 2.0323 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 2.0883 -0.9679 -3.5990 16 6 3.4453 -1.2546 -3.8315 17 6 3.7967 -1.9526 -4.9488 18 6 2.7969 -2.3750 -5.8409 19 8 3.1002 -3.0050 -6.8419 20 7 1.5055 -2.0828 -5.5970 21 6 0.4732 -2.5249 -6.5379 22 6 0.2494 -1.4421 -7.5954 23 8 1.4347 -1.2894 -8.3790 24 6 1.1474 -1.3872 -4.4852 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7087 1.1613 3.4844 29 1 1.2087 0.5776 -2.5449 30 1 4.2005 -0.9258 -3.1328 31 1 4.8338 -2.1825 -5.1440 32 1 -0.4571 -2.7039 -5.9988 33 1 0.7947 -3.4461 -7.0236 34 1 0.0144 -0.4977 -7.1045 35 1 -0.5789 -1.7314 -8.2422 36 1 1.3650 -0.6173 -9.0708 37 1 0.1059 -1.1660 -4.3047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330870565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:49 Heat of formation + Delta-G solvation = -109.445538 kcal Electronic energy + Delta-G solvation = -21723.339152 eV Core-core repulsion = 18272.404412 eV Total energy + Delta-G solvation = -3450.934740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.43975 -40.66919 -38.04186 -37.90118 -36.05596 -35.71763 -34.44764 -32.43036 -30.78880 -29.46324 -27.15132 -25.50799 -25.03993 -23.98154 -22.78491 -21.12111 -19.21556 -18.77227 -18.23655 -18.11129 -17.68779 -17.54254 -16.82457 -16.57839 -16.31418 -15.69223 -15.43373 -15.01741 -14.92751 -14.41780 -14.36143 -14.08992 -13.61261 -13.41440 -13.32262 -12.95433 -12.91116 -12.65418 -12.54259 -12.33864 -12.15696 -12.01529 -11.18954 -11.06464 -10.98142 -10.86402 -10.62985 -10.43175 -10.33028 -8.73460 -8.13181 -6.22320 -0.17517 0.75412 1.40556 1.43958 1.52659 1.57170 1.94280 2.36242 2.52494 2.66714 3.17316 3.34579 3.66159 3.81966 3.94791 4.04468 4.11435 4.25703 4.41225 4.49598 4.56958 4.74741 4.82817 4.84462 5.01327 5.03187 5.06534 5.17631 5.40515 5.55860 5.75153 5.82416 5.98552 6.06266 6.26222 6.71733 6.87910 6.91836 7.03217 7.42670 7.55210 8.92309 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.003691 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.158849 B = 7584.280633 C = 8022.476586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.026 3.974 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.949 3.051 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.527 3.473 13 O -0.572 6.572 14 N -0.661 5.661 15 C 0.019 3.981 16 C -0.001 4.001 17 C -0.258 4.258 18 C 0.508 3.492 19 O -0.583 6.583 20 N -0.481 5.481 21 C 0.081 3.919 22 C 0.059 3.941 23 O -0.592 6.592 24 C 0.139 3.861 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.024 0.976 28 H 0.264 0.736 29 H 0.423 0.577 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.392 0.608 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 1.634 -18.160 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.005 3.995 3 H 0.065 0.935 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.202 1.202 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.449 6.449 14 N -0.313 5.313 15 C -0.078 4.078 16 C -0.024 4.024 17 C -0.280 4.280 18 C 0.311 3.689 19 O -0.468 6.468 20 N -0.191 5.191 21 C -0.040 4.040 22 C -0.019 4.019 23 O -0.399 6.399 24 C 0.009 3.991 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.263 0.737 30 H 0.141 0.859 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.241 0.759 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.835 0.164 -18.186 19.429 hybrid contribution 0.386 0.391 0.789 0.961 sum -6.449 0.555 -17.397 18.563 Atomic orbital electron populations 1.21571 0.94461 0.99660 1.02145 1.18822 0.95735 0.96088 0.88836 0.93455 1.21327 1.31443 1.12662 0.91183 0.93455 1.25495 0.95258 0.95709 1.01163 1.69936 1.37221 1.23447 1.24176 0.85639 0.78331 0.78620 0.79864 1.20679 1.20203 1.20033 1.21759 0.77867 0.83595 0.85081 1.90560 1.38601 1.28680 1.87102 1.43260 1.59039 1.26744 1.02212 1.16870 0.91953 1.06908 0.92020 1.21574 0.96217 0.90847 0.93794 1.21987 1.00664 1.07985 0.97355 1.17118 0.82814 0.81901 0.87032 1.90915 1.81360 1.44187 1.30322 1.45340 1.09116 1.44375 1.20244 1.22485 0.91461 0.99358 0.90658 1.22701 0.88043 0.98124 0.93026 1.86708 1.38325 1.63641 1.51260 1.22281 1.01266 0.90050 0.85485 0.91318 0.91992 0.95695 0.92653 0.73748 0.85869 0.83414 0.83294 0.89645 0.91429 0.89003 0.75858 0.77193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 8.87 71.98 0.64 -4.22 16 2 C 0.03 1.21 2.64 -12.29 -0.03 1.18 16 3 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 4 C -0.53 -29.12 8.37 25.60 0.21 -28.90 16 5 H 0.05 2.83 6.75 -2.91 -0.02 2.81 16 6 C 0.02 1.24 5.30 84.66 0.45 1.69 16 7 N -0.91 -48.73 11.32 21.45 0.24 -48.48 16 8 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 C 0.53 21.77 7.01 87.66 0.61 22.38 16 13 O -0.57 -28.55 14.55 -3.06 -0.04 -28.60 16 14 N -0.66 -19.02 5.15 -303.97 -1.57 -20.59 16 15 C 0.02 0.53 5.78 37.81 0.22 0.75 16 16 C 0.00 -0.03 8.91 22.41 0.20 0.17 16 17 C -0.26 -8.08 9.98 22.38 0.22 -7.85 16 18 C 0.51 16.23 7.03 84.82 0.60 16.83 16 19 O -0.58 -22.47 15.83 2.03 0.03 -22.43 16 20 N -0.48 -10.97 2.57 -650.36 -1.67 -12.65 16 21 C 0.08 1.24 5.79 86.38 0.50 1.74 16 22 C 0.06 0.69 7.39 71.98 0.53 1.22 16 23 O -0.59 -11.59 12.43 -141.32 -1.76 -13.34 16 24 C 0.14 2.75 10.20 83.51 0.85 3.60 16 25 H 0.07 3.17 6.07 -2.39 -0.01 3.15 16 26 H 0.06 1.85 7.68 -2.39 -0.02 1.83 16 27 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.42 9.04 8.40 -92.71 -0.78 8.26 16 30 H 0.12 4.08 7.91 -2.91 -0.02 4.06 16 31 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.15 0.93 8.01 -2.39 -0.02 0.91 16 33 H 0.09 1.76 7.37 -2.39 -0.02 1.75 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.39 3.94 9.12 -74.06 -0.68 3.26 16 37 H 0.21 2.07 8.04 -2.91 -0.02 2.05 16 Total: -1.00 -79.97 318.27 1.93 -78.05 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -0.34 Total: 13.70 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.01 Total: 8.59 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.00 Total: -81.71 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -1.77 Total: -64.37 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -79.97 1.93 -78.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330870565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.397 kcal (2) G-P(sol) polarization free energy of solvation -79.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds