Wall clock time and date at job start Tue Mar 31 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 O 1.20828 * 119.99715 * 120.00127 * 12 2 1 14 14 O 1.34228 * 119.99941 * 300.00520 * 12 2 1 15 15 C 1.45200 * 116.99913 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47226 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00206 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00165 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00022 * 180.02562 * 18 16 15 20 20 C 1.47194 * 112.85013 * 50.33041 * 19 18 16 21 21 N 7.72807 * 71.68650 * 88.20895 * 2 1 3 22 22 C 1.53783 * 113.61019 * 279.13539 * 19 18 16 23 23 C 1.53954 * 87.01673 * 220.05021 * 22 19 18 24 24 C 1.53779 * 87.11408 * 25.36189 * 23 22 19 25 25 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 28 28 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 29 29 H 1.09003 * 109.47092 * 299.99529 * 15 14 12 30 30 H 1.09005 * 109.47069 * 59.99678 * 15 14 12 31 31 H 0.96994 * 120.00027 * 359.97438 * 18 16 15 32 32 H 1.09003 * 113.61759 * 334.56507 * 22 19 18 33 33 H 1.08996 * 113.61636 * 105.47296 * 22 19 18 34 34 H 1.09005 * 113.53692 * 270.81032 * 23 22 19 35 35 H 1.09005 * 113.74255 * 139.94563 * 23 22 19 36 36 H 1.08992 * 113.61515 * 220.09078 * 24 23 22 37 37 H 1.08998 * 113.68655 * 89.19830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 6 1.7629 -0.3294 4.8639 17 8 1.0643 0.6609 4.8161 18 7 2.1252 -0.8415 6.0568 19 6 1.6737 -0.2029 7.2957 20 6 0.2222 0.0411 7.3169 21 7 -0.8982 0.2293 7.3331 22 6 2.5105 1.0233 7.6970 23 6 2.3963 0.5254 9.1493 24 6 2.2023 -0.8852 8.5684 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.9111 -0.5221 -4.4375 29 1 1.8626 -2.0133 3.5564 30 1 3.3164 -0.9862 3.5568 31 1 2.6842 -1.6332 6.0951 32 1 3.5284 1.0038 7.3075 33 1 2.0063 1.9732 7.5192 34 1 1.5192 0.9066 9.6725 35 1 3.3149 0.6380 9.7253 36 1 1.4498 -1.4737 9.0930 37 1 3.1350 -1.4285 8.4173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333247790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:15 Heat of formation + Delta-G solvation = -59.944538 kcal Electronic energy + Delta-G solvation = -21335.767762 eV Core-core repulsion = 17886.979546 eV Total energy + Delta-G solvation = -3448.788216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98678 -39.87659 -38.54511 -36.05515 -35.82734 -34.02466 -33.93309 -31.38777 -29.09773 -26.44540 -25.99814 -25.18931 -23.40375 -21.94517 -20.79736 -19.92044 -18.20969 -17.45968 -17.13283 -16.56537 -16.39496 -16.07294 -15.57925 -15.27440 -14.77651 -14.55485 -14.14192 -13.81436 -13.35247 -13.19875 -13.00832 -12.94941 -12.58163 -12.43737 -12.25144 -12.13554 -11.98604 -11.56962 -11.38085 -11.13493 -11.06820 -10.70327 -10.44159 -10.36012 -10.01938 -9.68803 -9.68533 -9.34275 -9.18672 -8.65436 -6.13962 -4.17074 1.96849 2.28993 2.40365 2.77591 3.03938 3.23998 3.32097 3.34246 3.35894 3.57742 3.84006 3.97102 4.23320 4.33052 4.45955 4.67883 5.04731 5.08574 5.10178 5.10379 5.16544 5.29281 5.35846 5.49240 5.62987 5.67215 5.91379 6.16646 6.32429 6.39611 6.70186 6.91487 7.00443 7.09137 7.28183 7.44851 7.85982 8.36207 8.60567 8.99905 9.42942 10.98128 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.003407 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.112758 B = 8215.976153 C = 8595.224782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.028 3.972 3 H 0.066 0.934 4 C -0.519 4.519 5 H 0.095 0.905 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.882 3.118 9 H -0.275 1.275 10 H -0.263 1.263 11 H -0.293 1.293 12 C 0.476 3.524 13 O -0.501 6.501 14 O -0.343 6.343 15 C 0.046 3.954 16 C 0.515 3.485 17 O -0.499 6.499 18 N -0.717 5.717 19 C 0.245 3.755 20 C 0.220 3.780 21 N -0.400 5.400 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.123 4.123 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.413 0.587 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 0.318 25.759 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 H 0.084 0.916 4 C -0.557 4.557 5 H 0.113 0.887 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.711 3.289 9 H -0.202 1.202 10 H -0.188 1.188 11 H -0.220 1.220 12 C 0.319 3.681 13 O -0.386 6.386 14 O -0.261 6.261 15 C -0.032 4.032 16 C 0.301 3.699 17 O -0.370 6.370 18 N -0.375 5.375 19 C 0.155 3.845 20 C -0.100 4.100 21 N -0.076 5.076 22 C -0.170 4.170 23 C -0.179 4.179 24 C -0.162 4.162 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.250 0.750 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.530 1.011 25.466 25.532 hybrid contribution 0.125 0.103 -0.345 0.381 sum 1.655 1.114 25.121 25.200 Atomic orbital electron populations 1.22103 0.96263 1.01790 1.00294 1.19163 0.94065 0.97763 0.88181 0.91599 1.20898 1.33106 1.14635 0.87067 0.88697 1.24893 0.95586 0.96620 0.95515 1.69861 1.44885 1.40100 0.97968 0.86938 0.80806 0.83671 0.77459 1.20198 1.18821 1.22035 1.24718 0.76927 0.83218 0.83226 1.90551 1.35635 1.26046 1.86402 1.86694 1.70076 1.54874 1.14434 1.22438 1.00693 0.96330 0.83697 1.20505 0.80177 0.84609 0.84633 1.90794 1.35101 1.24429 1.86698 1.45855 1.54815 1.33195 1.03590 1.18589 0.82672 0.97726 0.85499 1.28172 0.93831 0.94075 0.93956 1.81205 1.12188 1.07271 1.06904 1.23456 1.00762 0.97269 0.95504 1.22851 1.03564 0.95045 0.96390 1.23318 1.02512 0.98108 0.92286 0.92374 0.93421 0.92933 0.92281 0.88360 0.88139 0.74995 0.87496 0.89815 0.89508 0.89402 0.89607 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.60 37.16 0.32 -2.92 16 2 C 0.03 0.67 2.33 -92.92 -0.22 0.45 16 3 H 0.07 1.55 7.20 -51.93 -0.37 1.18 16 4 C -0.52 -14.81 8.96 -34.44 -0.31 -15.12 16 5 H 0.10 3.02 7.00 -52.49 -0.37 2.65 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 8 Si 0.88 21.38 24.37 -169.99 -4.14 17.24 16 9 H -0.28 -6.48 6.88 56.52 0.39 -6.09 16 10 H -0.26 -6.06 6.52 56.52 0.37 -5.69 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 C 0.48 10.57 7.25 36.00 0.26 10.83 16 13 O -0.50 -11.99 15.21 -18.75 -0.29 -12.27 16 14 O -0.34 -6.57 9.66 -45.90 -0.44 -7.02 16 15 C 0.05 0.63 5.94 36.00 0.21 0.84 16 16 C 0.52 6.57 7.66 -10.99 -0.08 6.49 16 17 O -0.50 -8.68 15.27 -14.11 -0.22 -8.90 16 18 N -0.72 -5.54 5.31 -49.46 -0.26 -5.81 16 19 C 0.25 1.87 1.18 -133.79 -0.16 1.71 16 20 C 0.22 2.64 12.65 -20.75 -0.26 2.38 16 21 N -0.40 -6.01 18.54 42.16 0.78 -5.23 16 22 C -0.13 -0.80 7.45 -25.83 -0.19 -1.00 16 23 C -0.14 -0.54 7.80 -25.83 -0.20 -0.74 16 24 C -0.12 -0.43 7.34 -25.92 -0.19 -0.62 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 27 H 0.05 1.18 3.28 -51.93 -0.17 1.01 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 30 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 31 H 0.41 1.55 8.64 -40.82 -0.35 1.20 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.09 0.39 8.13 -51.93 -0.42 -0.04 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.29 8.08 -51.93 -0.42 -0.13 16 37 H 0.11 0.11 8.13 -51.93 -0.42 -0.32 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -37.30 321.07 -4.53 -41.83 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.66 Total: -2.78 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.92 Total: 4.40 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 1.29 Total: -37.34 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.94 Total: -28.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.30 -4.53 -41.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333247790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.114 kcal (2) G-P(sol) polarization free energy of solvation -37.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds