Wall clock time and date at job start Tue Mar 31 2020 01:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 O 1.20828 * 119.99715 * 120.00127 * 12 2 1 14 14 O 1.34228 * 119.99941 * 300.00520 * 12 2 1 15 15 C 1.45200 * 116.99913 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47226 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00206 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00165 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00022 * 180.02562 * 18 16 15 20 20 C 1.47194 * 112.85013 * 50.33041 * 19 18 16 21 21 N 7.72807 * 71.68650 * 88.20895 * 2 1 3 22 22 C 1.53783 * 113.61019 * 279.13539 * 19 18 16 23 23 C 1.53954 * 87.01673 * 220.05021 * 22 19 18 24 24 C 1.53779 * 87.11408 * 25.36189 * 23 22 19 25 25 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 28 28 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 29 29 H 1.09003 * 109.47092 * 299.99529 * 15 14 12 30 30 H 1.09005 * 109.47069 * 59.99678 * 15 14 12 31 31 H 0.96994 * 120.00027 * 359.97438 * 18 16 15 32 32 H 1.09003 * 113.61759 * 334.56507 * 22 19 18 33 33 H 1.08996 * 113.61636 * 105.47296 * 22 19 18 34 34 H 1.09005 * 113.53692 * 270.81032 * 23 22 19 35 35 H 1.09005 * 113.74255 * 139.94563 * 23 22 19 36 36 H 1.08992 * 113.61515 * 220.09078 * 24 23 22 37 37 H 1.08998 * 113.68655 * 89.19830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 6 1.7629 -0.3294 4.8639 17 8 1.0643 0.6609 4.8161 18 7 2.1252 -0.8415 6.0568 19 6 1.6737 -0.2029 7.2957 20 6 0.2222 0.0411 7.3169 21 7 -0.8982 0.2293 7.3331 22 6 2.5105 1.0233 7.6970 23 6 2.3963 0.5254 9.1493 24 6 2.2023 -0.8852 8.5684 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.9111 -0.5221 -4.4375 29 1 1.8626 -2.0133 3.5564 30 1 3.3164 -0.9862 3.5568 31 1 2.6842 -1.6332 6.0951 32 1 3.5284 1.0038 7.3075 33 1 2.0063 1.9732 7.5192 34 1 1.5192 0.9066 9.6725 35 1 3.3149 0.6380 9.7253 36 1 1.4498 -1.4737 9.0930 37 1 3.1350 -1.4285 8.4173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333247790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:14 Heat of formation + Delta-G solvation = -87.561736 kcal Electronic energy + Delta-G solvation = -21336.965334 eV Core-core repulsion = 17886.979546 eV Total energy + Delta-G solvation = -3449.985787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.88152 -41.29808 -39.50669 -37.42323 -37.01478 -35.99113 -34.77227 -33.46043 -30.19442 -27.21272 -26.87069 -26.71946 -25.13240 -22.69017 -21.67621 -21.47562 -19.15846 -18.92001 -18.52941 -17.99001 -17.72334 -17.23164 -17.02654 -16.29857 -16.04286 -15.74653 -15.19778 -15.06758 -14.90375 -14.32864 -14.12415 -14.06022 -13.98951 -13.81132 -13.35101 -13.30161 -12.95018 -12.85988 -12.64535 -12.49085 -12.28697 -11.82501 -11.71465 -11.61964 -11.54546 -11.31798 -11.23686 -10.96288 -10.79296 -10.44895 -8.33537 -6.43130 1.02256 1.27320 1.31395 1.35367 1.38895 1.49095 1.54422 1.66289 2.29637 2.40857 2.64381 2.99765 3.36069 3.47817 3.59902 3.83845 3.98269 4.06828 4.11249 4.28422 4.33640 4.50637 4.67879 4.76017 4.80238 4.92499 4.93518 5.01346 5.07651 5.16719 5.24662 5.30359 5.42216 5.42773 6.18621 6.25173 6.41121 6.68704 6.88951 7.00256 7.21881 8.82702 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.003407 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.112758 B = 8215.976153 C = 8595.224782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.019 3.981 3 H 0.077 0.923 4 C -0.529 4.529 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.941 5.941 8 Si 0.947 3.053 9 H -0.260 1.260 10 H -0.239 1.239 11 H -0.292 1.292 12 C 0.485 3.515 13 O -0.527 6.527 14 O -0.349 6.349 15 C 0.037 3.963 16 C 0.520 3.480 17 O -0.552 6.552 18 N -0.689 5.689 19 C 0.224 3.776 20 C 0.237 3.763 21 N -0.465 5.465 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.102 4.102 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.271 0.729 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.436 0.564 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 0.752 28.196 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 H 0.094 0.906 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.580 5.580 8 Si 0.772 3.228 9 H -0.186 1.186 10 H -0.163 1.163 11 H -0.220 1.220 12 C 0.329 3.671 13 O -0.415 6.415 14 O -0.265 6.265 15 C -0.040 4.040 16 C 0.306 3.694 17 O -0.428 6.428 18 N -0.347 5.347 19 C 0.134 3.866 20 C -0.082 4.082 21 N -0.142 5.142 22 C -0.172 4.172 23 C -0.171 4.171 24 C -0.141 4.141 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.277 0.723 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.135 1.406 27.979 28.096 hybrid contribution 0.053 -0.119 -0.988 0.996 sum 2.189 1.287 26.992 27.111 Atomic orbital electron populations 1.22011 0.94296 1.02102 1.01430 1.19074 0.95618 0.97753 0.87622 0.90550 1.20987 1.32625 1.13572 0.89505 0.93565 1.25789 0.96975 1.00105 0.94805 1.70011 1.46810 1.42377 0.98779 0.85883 0.79201 0.79572 0.78169 1.18612 1.16286 1.21967 1.24157 0.76389 0.82521 0.84041 1.90540 1.36801 1.27102 1.87057 1.86600 1.69974 1.55334 1.14642 1.22906 1.02360 0.96710 0.82046 1.20395 0.79560 0.83897 0.85577 1.90788 1.37735 1.26811 1.87463 1.45625 1.53613 1.33269 1.02172 1.19297 0.80429 1.00167 0.86703 1.29099 0.94822 0.92235 0.92061 1.81197 1.14398 1.09548 1.09018 1.23560 1.00932 0.95266 0.97394 1.22842 1.04437 0.94802 0.94986 1.23435 1.03895 0.98052 0.88688 0.92621 0.90879 0.93007 0.91974 0.86568 0.85528 0.72283 0.85492 0.92412 0.90641 0.86706 0.89115 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 8.60 71.99 0.62 -5.34 16 2 C 0.02 0.89 2.33 -12.28 -0.03 0.86 16 3 H 0.08 3.48 7.20 -2.39 -0.02 3.46 16 4 C -0.53 -30.83 8.96 25.60 0.23 -30.60 16 5 H 0.05 3.08 7.00 -2.91 -0.02 3.06 16 6 C 0.02 1.25 5.45 84.65 0.46 1.71 16 7 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 8 Si 0.95 43.39 24.37 68.60 1.67 45.06 16 9 H -0.26 -11.28 6.88 99.48 0.68 -10.60 16 10 H -0.24 -9.99 6.52 99.48 0.65 -9.34 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 C 0.48 21.29 7.25 71.24 0.52 21.80 16 13 O -0.53 -25.36 15.21 21.96 0.33 -25.03 16 14 O -0.35 -12.88 9.66 -45.04 -0.43 -13.32 16 15 C 0.04 0.92 5.94 71.23 0.42 1.34 16 16 C 0.52 12.30 7.66 87.66 0.67 12.97 16 17 O -0.55 -18.89 15.27 15.76 0.24 -18.65 16 18 N -0.69 -8.59 5.31 -428.77 -2.28 -10.86 16 19 C 0.22 2.87 1.18 2.32 0.00 2.87 16 20 C 0.24 5.57 12.65 89.44 1.13 6.70 16 21 N -0.47 -14.27 18.54 20.01 0.37 -13.90 16 22 C -0.13 -1.32 7.45 31.18 0.23 -1.09 16 23 C -0.13 -0.58 7.80 31.18 0.24 -0.33 16 24 C -0.10 -0.28 7.34 31.12 0.23 -0.05 16 25 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 2.70 8.11 -2.39 -0.02 2.68 16 27 H 0.05 2.18 3.28 -2.39 -0.01 2.17 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.12 2.52 8.13 -2.39 -0.02 2.50 16 30 H 0.13 2.53 8.13 -2.38 -0.02 2.51 16 31 H 0.44 1.41 8.64 -92.71 -0.80 0.61 16 32 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 34 H 0.07 0.53 8.13 -2.38 -0.02 0.51 16 35 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.09 0.26 8.08 -2.39 -0.02 0.24 16 37 H 0.15 -0.64 8.13 -2.39 -0.02 -0.66 16 Total: -1.00 -86.05 321.07 5.16 -80.89 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 0.23 Total: 3.30 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 4.73 Total: 10.85 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.61 Total: -83.11 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: 0.14 Total: -57.00 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.67 Total: 45.06 kcal Total: -86.05 5.16 -80.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333247790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.672 kcal (2) G-P(sol) polarization free energy of solvation -86.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds