Wall clock time and date at job start Tue Mar 31 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 112.84946 * 2 1 4 4 C 1.53784 * 113.68561 * 228.73923 * 2 1 3 5 5 C 1.53785 * 87.08160 * 220.00563 * 4 2 1 6 6 C 1.53781 * 113.61894 * 131.20385 * 2 1 3 7 7 H 1.09004 * 113.61257 * 25.50814 * 6 2 1 8 8 N 1.46493 * 113.61168 * 254.61338 * 6 2 1 9 9 C 1.34779 * 120.00023 * 155.00165 * 8 6 2 10 10 O 1.21589 * 119.99933 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99954 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00193 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47021 * 325.00330 * 12 11 9 14 14 C 1.50691 * 109.47722 * 204.99812 * 12 11 9 15 15 H 1.07999 * 120.00389 * 265.31376 * 14 12 11 16 16 C 1.37878 * 119.99876 * 85.30587 * 14 12 11 17 17 N 1.31515 * 120.00042 * 185.03990 * 16 14 12 18 18 Si 1.86804 * 119.99880 * 5.04577 * 16 14 12 19 19 H 1.48502 * 109.46859 * 84.64561 * 18 16 14 20 20 H 1.48504 * 109.46923 * 204.64100 * 18 16 14 21 21 H 1.48499 * 109.47178 * 324.64393 * 18 16 14 22 22 C 1.53003 * 109.46984 * 84.99565 * 12 11 9 23 23 F 1.39902 * 109.46666 * 64.14505 * 22 12 11 24 24 F 1.39899 * 109.47502 * 184.14203 * 22 12 11 25 25 F 1.39898 * 109.47552 * 304.14624 * 22 12 11 26 26 H 1.09005 * 109.46229 * 288.80206 * 1 2 3 27 27 H 1.09000 * 109.47305 * 48.79702 * 1 2 3 28 28 H 1.09001 * 109.47503 * 168.80690 * 1 2 3 29 29 H 1.09005 * 113.61405 * 334.54899 * 4 2 1 30 30 H 1.09004 * 113.61849 * 105.45457 * 4 2 1 31 31 H 1.08998 * 113.61284 * 270.88611 * 5 4 2 32 32 H 1.08995 * 113.61450 * 139.97674 * 5 4 2 33 33 H 0.97006 * 120.00128 * 334.99334 * 8 6 2 34 34 H 0.97006 * 120.00197 * 359.97438 * 11 9 8 35 35 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1478 -0.9288 -1.0586 5 6 3.1937 -1.3120 0.0017 6 6 2.1462 -0.9282 1.0601 7 1 1.4952 -1.7532 1.3494 8 7 2.7076 -0.2146 2.2097 9 6 2.8154 -0.8355 3.4011 10 8 2.4463 -1.9877 3.5218 11 7 3.3324 -0.1791 4.4587 12 6 3.4491 -0.8538 5.7538 13 1 2.6050 -1.5301 5.8886 14 6 3.4513 0.1730 6.8568 15 1 4.3873 0.5417 7.2496 16 6 2.2582 0.6419 7.3644 17 7 2.2576 1.6087 8.2561 18 14 0.6426 -0.0960 6.7857 19 1 0.3444 -1.3166 7.5772 20 1 -0.4486 0.8938 6.9723 21 1 0.7478 -0.4518 5.3478 22 6 4.7539 -1.6518 5.7974 23 9 5.8403 -0.7738 5.7191 24 9 4.8209 -2.3710 6.9955 25 9 4.7935 -2.5402 4.7174 26 1 -0.3632 0.3312 0.9729 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0081 -0.1995 29 1 1.4973 -1.7540 -1.3485 30 1 2.5670 -0.3984 -1.9137 31 1 4.0718 -0.6662 0.0022 32 1 3.4467 -2.3722 0.0022 33 1 3.0018 0.7047 2.1135 34 1 3.6272 0.7400 4.3623 35 1 1.4182 1.9388 8.6129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333306807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:18 Heat of formation + Delta-G solvation = -178.769623 kcal Electronic energy + Delta-G solvation = -23173.034041 eV Core-core repulsion = 19177.236442 eV Total energy + Delta-G solvation = -3995.797599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.01809 -46.52218 -46.51769 -39.93298 -38.33682 -34.73582 -33.13124 -32.37869 -29.86350 -28.86259 -24.94947 -24.67656 -23.06430 -21.40590 -20.27325 -19.72987 -18.41984 -17.54411 -17.24236 -16.88022 -16.39275 -16.29370 -14.82746 -14.73709 -14.30131 -14.13401 -13.57395 -13.50819 -13.39124 -13.25443 -13.02813 -12.94545 -12.71857 -12.68830 -12.63702 -12.55580 -11.84407 -11.74296 -11.64912 -11.15498 -11.11388 -10.65060 -10.47060 -10.30804 -10.16154 -9.79613 -9.58817 -8.96506 -8.70751 -8.22601 -6.52096 -4.66773 3.08804 3.21836 3.26985 3.35562 3.68074 4.02701 4.13442 4.41445 4.57404 4.59410 4.80368 4.91691 5.00389 5.22061 5.25471 5.31880 5.42947 5.49502 5.62407 5.70071 5.73435 5.80222 5.96682 6.03929 6.16240 6.29226 6.41858 6.88046 6.95105 7.25364 7.53103 7.93839 8.54085 8.70668 9.04187 9.24289 10.56002 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.006679 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.497967 B = 4191.546850 C = 5232.993961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 H 0.092 0.908 4 C -0.135 4.135 5 C -0.156 4.156 6 C 0.148 3.852 7 H 0.112 0.888 8 N -0.743 5.743 9 C 0.693 3.307 10 O -0.595 6.595 11 N -0.730 5.730 12 C 0.223 3.777 13 H 0.086 0.914 14 C -0.537 4.537 15 H 0.094 0.906 16 C 0.100 3.900 17 N -0.861 5.861 18 Si 0.870 3.130 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.251 1.251 22 C 0.439 3.561 23 F -0.191 7.191 24 F -0.186 7.186 25 F -0.194 7.194 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.393 0.607 34 H 0.395 0.605 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -1.049 -14.661 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.195 4.195 6 C 0.042 3.958 7 H 0.130 0.870 8 N -0.397 5.397 9 C 0.394 3.606 10 O -0.473 6.473 11 N -0.385 5.385 12 C 0.119 3.881 13 H 0.104 0.896 14 C -0.575 4.575 15 H 0.112 0.888 16 C -0.110 4.110 17 N -0.493 5.493 18 Si 0.695 3.305 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.175 1.175 22 C 0.383 3.617 23 F -0.173 7.173 24 F -0.167 7.167 25 F -0.175 7.175 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.226 0.774 34 H 0.231 0.769 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.251 -2.013 -14.372 14.567 hybrid contribution -0.301 0.501 -0.278 0.648 sum -1.553 -1.512 -14.651 14.810 Atomic orbital electron populations 1.21722 0.94553 1.01823 1.01878 1.23009 0.96090 0.98988 0.96072 0.89022 1.22805 0.98515 0.99408 0.96525 1.23429 0.97850 1.02126 0.96076 1.22402 0.95036 0.95494 0.82865 0.86976 1.45235 1.68865 1.16488 1.09146 1.16469 0.78672 0.85054 0.80405 1.90855 1.55953 1.16469 1.84057 1.46814 1.65949 1.16621 1.09099 1.19847 0.89645 0.94725 0.83896 0.89591 1.20792 0.96312 1.23910 1.16436 0.88816 1.24974 0.99329 0.93373 0.93338 1.69872 1.28388 1.24116 1.26974 0.86899 0.82491 0.79650 0.81421 1.19273 1.20856 1.17490 1.21651 0.89028 0.78443 0.72561 1.93072 1.58917 1.69297 1.95981 1.93095 1.96880 1.79387 1.47387 1.93142 1.97031 1.70869 1.56499 0.92317 0.92681 0.92478 0.89955 0.91210 0.89972 0.91121 0.77356 0.76922 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.71 37.16 0.36 -1.04 16 2 C -0.12 -1.24 4.11 -89.80 -0.37 -1.61 16 3 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 4 C -0.13 -1.23 7.64 -25.91 -0.20 -1.43 16 5 C -0.16 -1.78 7.88 -25.92 -0.20 -1.98 16 6 C 0.15 2.00 3.80 -67.12 -0.26 1.74 16 7 H 0.11 1.76 7.42 -51.93 -0.39 1.37 16 8 N -0.74 -11.37 5.36 -57.88 -0.31 -11.68 16 9 C 0.69 14.00 7.85 -86.92 -0.68 13.32 16 10 O -0.59 -14.11 14.55 5.29 0.08 -14.04 16 11 N -0.73 -15.00 4.93 -59.81 -0.30 -15.29 16 12 C 0.22 5.23 1.45 -69.09 -0.10 5.13 16 13 H 0.09 2.16 5.34 -51.93 -0.28 1.88 16 14 C -0.54 -13.79 8.68 -34.44 -0.30 -14.09 16 15 H 0.09 2.61 7.69 -52.49 -0.40 2.20 16 16 C 0.10 2.61 5.47 -17.82 -0.10 2.52 16 17 N -0.86 -23.66 13.96 55.43 0.77 -22.89 16 18 Si 0.87 20.37 26.92 -169.99 -4.58 15.79 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.25 -5.98 6.82 56.52 0.39 -5.59 16 22 C 0.44 10.00 2.83 37.16 0.11 10.11 16 23 F -0.19 -4.21 16.65 2.25 0.04 -4.18 16 24 F -0.19 -4.27 17.12 2.25 0.04 -4.23 16 25 F -0.19 -4.41 15.57 2.25 0.04 -4.38 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 29 H 0.08 0.71 7.97 -51.93 -0.41 0.30 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.39 4.90 8.74 -40.82 -0.36 4.54 16 34 H 0.40 7.27 8.61 -40.82 -0.35 6.91 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -29.79 306.34 -5.63 -35.42 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.29 Total: 8.21 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -1.74 Total: 12.65 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.17 Total: -49.86 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 9 Polarization: -12.90 SS G_CDS: 0.11 Total: -12.79 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.58 Total: 15.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.79 -5.63 -35.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333306807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.352 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds