Wall clock time and date at job start Tue Mar 31 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 112.84946 * 2 1 4 4 C 1.53784 * 113.68561 * 228.73923 * 2 1 3 5 5 C 1.53785 * 87.08160 * 220.00563 * 4 2 1 6 6 C 1.53781 * 113.61894 * 131.20385 * 2 1 3 7 7 H 1.09004 * 113.61257 * 25.50814 * 6 2 1 8 8 N 1.46493 * 113.61168 * 254.61338 * 6 2 1 9 9 C 1.34779 * 120.00023 * 155.00165 * 8 6 2 10 10 O 1.21589 * 119.99933 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99954 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00193 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47021 * 325.00330 * 12 11 9 14 14 C 1.50691 * 109.47722 * 204.99812 * 12 11 9 15 15 H 1.07999 * 120.00389 * 265.31376 * 14 12 11 16 16 C 1.37878 * 119.99876 * 85.30587 * 14 12 11 17 17 N 1.31515 * 120.00042 * 185.03990 * 16 14 12 18 18 Si 1.86804 * 119.99880 * 5.04577 * 16 14 12 19 19 H 1.48502 * 109.46859 * 84.64561 * 18 16 14 20 20 H 1.48504 * 109.46923 * 204.64100 * 18 16 14 21 21 H 1.48499 * 109.47178 * 324.64393 * 18 16 14 22 22 C 1.53003 * 109.46984 * 84.99565 * 12 11 9 23 23 F 1.39902 * 109.46666 * 64.14505 * 22 12 11 24 24 F 1.39899 * 109.47502 * 184.14203 * 22 12 11 25 25 F 1.39898 * 109.47552 * 304.14624 * 22 12 11 26 26 H 1.09005 * 109.46229 * 288.80206 * 1 2 3 27 27 H 1.09000 * 109.47305 * 48.79702 * 1 2 3 28 28 H 1.09001 * 109.47503 * 168.80690 * 1 2 3 29 29 H 1.09005 * 113.61405 * 334.54899 * 4 2 1 30 30 H 1.09004 * 113.61849 * 105.45457 * 4 2 1 31 31 H 1.08998 * 113.61284 * 270.88611 * 5 4 2 32 32 H 1.08995 * 113.61450 * 139.97674 * 5 4 2 33 33 H 0.97006 * 120.00128 * 334.99334 * 8 6 2 34 34 H 0.97006 * 120.00197 * 359.97438 * 11 9 8 35 35 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1478 -0.9288 -1.0586 5 6 3.1937 -1.3120 0.0017 6 6 2.1462 -0.9282 1.0601 7 1 1.4952 -1.7532 1.3494 8 7 2.7076 -0.2146 2.2097 9 6 2.8154 -0.8355 3.4011 10 8 2.4463 -1.9877 3.5218 11 7 3.3324 -0.1791 4.4587 12 6 3.4491 -0.8538 5.7538 13 1 2.6050 -1.5301 5.8886 14 6 3.4513 0.1730 6.8568 15 1 4.3873 0.5417 7.2496 16 6 2.2582 0.6419 7.3644 17 7 2.2576 1.6087 8.2561 18 14 0.6426 -0.0960 6.7857 19 1 0.3444 -1.3166 7.5772 20 1 -0.4486 0.8938 6.9723 21 1 0.7478 -0.4518 5.3478 22 6 4.7539 -1.6518 5.7974 23 9 5.8403 -0.7738 5.7191 24 9 4.8209 -2.3710 6.9955 25 9 4.7935 -2.5402 4.7174 26 1 -0.3632 0.3312 0.9729 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0081 -0.1995 29 1 1.4973 -1.7540 -1.3485 30 1 2.5670 -0.3984 -1.9137 31 1 4.0718 -0.6662 0.0022 32 1 3.4467 -2.3722 0.0022 33 1 3.0018 0.7047 2.1135 34 1 3.6272 0.7400 4.3623 35 1 1.4182 1.9388 8.6129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333306807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:17 Heat of formation + Delta-G solvation = -199.107345 kcal Electronic energy + Delta-G solvation = -23173.915950 eV Core-core repulsion = 19177.236442 eV Total energy + Delta-G solvation = -3996.679508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.87054 -48.37902 -48.35893 -41.24551 -39.60483 -36.55813 -34.68120 -34.18223 -30.85597 -30.46971 -26.90711 -25.77283 -23.95064 -23.15364 -21.83668 -20.83123 -20.17199 -19.34759 -18.89005 -18.57545 -18.31591 -17.70185 -16.49402 -16.09708 -15.78756 -15.48215 -15.26055 -15.22886 -14.88183 -14.80226 -14.57002 -14.53062 -14.49645 -14.45901 -14.11176 -13.72485 -13.58127 -13.06314 -12.70597 -12.53227 -12.48682 -12.05121 -12.02828 -11.83270 -11.36845 -11.26140 -11.19246 -10.97027 -10.25763 -9.70239 -8.55254 -6.73331 1.25002 1.32679 1.44998 1.72241 1.96060 2.17679 2.31437 2.86273 3.17743 3.36101 3.38632 3.53125 3.72856 3.76459 3.93898 4.00963 4.40807 4.53671 4.59107 4.75100 4.86023 4.94663 4.95091 5.01822 5.11940 5.22049 5.33632 5.44813 5.52937 5.74626 5.85105 6.18616 6.44234 7.00019 7.21227 7.67005 8.56836 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.006679 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.497967 B = 4191.546850 C = 5232.993961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.108 0.892 4 C -0.119 4.119 5 C -0.154 4.154 6 C 0.127 3.873 7 H 0.086 0.914 8 N -0.725 5.725 9 C 0.690 3.310 10 O -0.632 6.632 11 N -0.727 5.727 12 C 0.232 3.768 13 H 0.072 0.928 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.066 3.934 17 N -0.897 5.897 18 Si 0.925 3.075 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.258 1.258 22 C 0.441 3.559 23 F -0.186 7.186 24 F -0.188 7.188 25 F -0.192 7.192 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.409 0.591 34 H 0.407 0.593 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -0.556 -16.914 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.126 0.874 4 C -0.157 4.157 5 C -0.193 4.193 6 C 0.022 3.978 7 H 0.104 0.896 8 N -0.380 5.380 9 C 0.391 3.609 10 O -0.513 6.513 11 N -0.383 5.383 12 C 0.126 3.874 13 H 0.090 0.910 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.182 1.182 22 C 0.385 3.615 23 F -0.168 7.168 24 F -0.170 7.170 25 F -0.173 7.173 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.245 0.755 34 H 0.244 0.756 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.725 -1.477 -16.673 16.827 hybrid contribution -0.088 0.323 0.367 0.497 sum -1.814 -1.154 -16.306 16.447 Atomic orbital electron populations 1.21733 0.94312 1.02337 1.01632 1.22999 0.96241 0.99302 0.94355 0.87400 1.22760 0.97293 0.99294 0.96341 1.23426 0.98199 1.01666 0.96014 1.22721 0.96232 0.96107 0.82770 0.89634 1.45128 1.67756 1.17152 1.07963 1.16552 0.78355 0.84665 0.81345 1.90831 1.57474 1.18206 1.84813 1.46301 1.66403 1.17115 1.08476 1.19520 0.89533 0.93919 0.84462 0.91000 1.20703 0.95291 1.24168 1.17346 0.91469 1.25483 1.01668 0.93524 0.93373 1.69931 1.29387 1.25467 1.28362 0.86069 0.79814 0.78967 0.80318 1.19490 1.19744 1.18211 1.21538 0.88976 0.78432 0.72548 1.93079 1.58593 1.69139 1.95955 1.93090 1.96890 1.79435 1.47537 1.93146 1.97023 1.70789 1.56382 0.93966 0.90674 0.92493 0.89412 0.88931 0.89170 0.92247 0.75458 0.75559 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.71 71.98 0.70 -1.77 16 2 C -0.11 -1.91 4.11 -10.27 -0.04 -1.95 16 3 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 4 C -0.12 -1.78 7.64 31.12 0.24 -1.55 16 5 C -0.15 -3.18 7.88 31.12 0.25 -2.94 16 6 C 0.13 3.23 3.80 45.52 0.17 3.40 16 7 H 0.09 2.66 7.42 -2.39 -0.02 2.65 16 8 N -0.72 -21.06 5.36 -455.29 -2.44 -23.50 16 9 C 0.69 27.31 7.85 179.05 1.41 28.72 16 10 O -0.63 -29.89 14.55 -3.99 -0.06 -29.94 16 11 N -0.73 -29.34 4.93 -461.42 -2.28 -31.62 16 12 C 0.23 10.81 1.45 44.24 0.06 10.87 16 13 H 0.07 3.60 5.34 -2.39 -0.01 3.59 16 14 C -0.54 -27.75 8.68 25.60 0.22 -27.53 16 15 H 0.07 3.80 7.69 -2.91 -0.02 3.78 16 16 C 0.07 3.46 5.47 84.65 0.46 3.93 16 17 N -0.90 -49.47 13.96 21.45 0.30 -49.17 16 18 Si 0.92 42.02 26.92 68.60 1.85 43.87 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.26 -11.94 6.82 99.48 0.68 -11.26 16 22 C 0.44 19.95 2.83 71.98 0.20 20.15 16 23 F -0.19 -8.11 16.65 44.97 0.75 -7.36 16 24 F -0.19 -8.61 17.12 44.97 0.77 -7.84 16 25 F -0.19 -8.62 15.57 44.97 0.70 -7.92 16 26 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.98 7.95 -2.39 -0.02 0.96 16 29 H 0.09 1.25 7.97 -2.38 -0.02 1.23 16 30 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.41 9.22 8.74 -92.70 -0.81 8.41 16 34 H 0.41 14.53 8.61 -92.70 -0.80 13.73 16 35 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -63.48 306.34 2.77 -60.72 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.49 Total: 21.44 kcal Atomic # 6 Polarization: 27.67 SS G_CDS: 3.67 Total: 31.34 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -4.42 Total: -104.29 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.06 Total: -29.94 kcal Atomic # 9 Polarization: -25.34 SS G_CDS: 2.22 Total: -23.12 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.85 Total: 43.87 kcal Total: -63.48 2.77 -60.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333306807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.391 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds