Wall clock time and date at job start Tue Mar 31 2020 01:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 112.85560 * 2 1 4 4 C 1.53786 * 113.69185 * 228.72605 * 2 1 3 5 5 C 1.54057 * 87.07709 * 220.01255 * 4 2 1 6 6 C 1.53782 * 86.98645 * 25.43293 * 5 4 2 7 7 H 1.08995 * 113.61266 * 219.97812 * 6 5 4 8 8 N 1.46495 * 113.61360 * 89.15745 * 6 5 4 9 9 C 1.34784 * 119.99850 * 105.86476 * 8 6 5 10 10 O 1.21587 * 119.99512 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00131 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00037 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47054 * 324.99327 * 12 11 9 14 14 C 1.50697 * 109.47016 * 205.00057 * 12 11 9 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00021 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99891 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00032 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47419 * 89.99289 * 18 16 14 20 20 H 1.48499 * 109.47011 * 209.99851 * 18 16 14 21 21 H 1.48506 * 109.46838 * 329.99138 * 18 16 14 22 22 C 1.52997 * 109.47294 * 84.99596 * 12 11 9 23 23 F 1.39905 * 109.47157 * 179.97438 * 22 12 11 24 24 F 1.39900 * 109.47010 * 60.00333 * 22 12 11 25 25 F 1.39897 * 109.47422 * 300.00024 * 22 12 11 26 26 H 1.08999 * 109.47098 * 288.80552 * 1 2 3 27 27 H 1.08996 * 109.46755 * 48.80746 * 1 2 3 28 28 H 1.08998 * 109.47004 * 168.80501 * 1 2 3 29 29 H 1.08995 * 113.61383 * 334.55910 * 4 2 1 30 30 H 1.08999 * 113.60990 * 105.46617 * 4 2 1 31 31 H 1.09000 * 113.61397 * 270.92508 * 5 4 2 32 32 H 1.09004 * 113.69373 * 139.95146 * 5 4 2 33 33 H 0.97004 * 120.00600 * 285.86507 * 8 6 5 34 34 H 0.97005 * 119.99645 * 359.97438 * 11 9 8 35 35 H 0.97001 * 120.00022 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1479 -0.9290 -1.0584 5 6 3.1954 -1.3126 0.0041 6 6 2.1460 -0.9280 1.0604 7 1 2.5624 -0.3971 1.9164 8 7 1.2711 -2.0368 1.4492 9 6 1.4328 -2.6349 2.6462 10 8 2.3050 -2.2544 3.4030 11 7 0.6282 -3.6554 3.0038 12 6 0.8036 -4.3051 4.3051 13 1 1.8632 -4.3284 4.5597 14 6 0.2718 -5.7136 4.2390 15 1 -0.1544 -6.0873 3.3198 16 6 0.3286 -6.5249 5.3524 17 7 0.8473 -6.0696 6.4720 18 14 -0.3298 -8.2710 5.2703 19 1 0.7578 -9.1910 4.8508 20 1 -0.8309 -8.6745 6.6087 21 1 -1.4400 -8.3356 4.2860 22 6 0.0393 -3.5210 5.3737 23 9 0.2063 -4.1418 6.6163 24 9 -1.3206 -3.4912 5.0469 25 9 0.5330 -2.2134 5.4351 26 1 -0.3633 0.3313 0.9728 27 1 -0.3633 0.6768 -0.7733 28 1 -0.3633 -1.0081 -0.1995 29 1 1.4975 -1.7542 -1.3482 30 1 2.5672 -0.3986 -1.9134 31 1 4.0732 -0.6664 0.0051 32 1 3.4491 -2.3727 0.0063 33 1 0.5755 -2.3407 0.8453 34 1 -0.0674 -3.9592 2.3998 35 1 0.8876 -6.6405 7.2552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333306809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:21 Heat of formation + Delta-G solvation = -150.669183 kcal Electronic energy + Delta-G solvation = -23313.649389 eV Core-core repulsion = 19319.070317 eV Total energy + Delta-G solvation = -3994.579072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.29047 -45.94289 -45.56058 -40.09826 -38.24477 -34.58471 -32.94829 -32.23057 -29.92374 -28.20301 -24.94120 -24.48225 -22.99705 -21.84377 -20.34484 -18.93228 -18.49977 -16.84023 -16.77673 -16.56594 -15.96501 -15.46936 -15.01152 -14.78048 -14.44429 -14.07122 -13.61232 -13.40747 -13.20870 -13.02419 -12.85474 -12.46841 -12.34243 -12.23779 -11.93201 -11.77382 -11.72584 -11.56060 -11.17333 -10.96216 -10.82582 -10.78617 -10.39233 -10.36997 -10.12060 -9.64215 -9.50436 -8.73315 -8.67508 -8.13785 -6.21610 -4.45333 3.17058 3.20012 3.26537 3.30275 3.78762 4.20444 4.41675 4.58866 4.62068 4.76592 4.89641 4.94843 4.97524 5.31370 5.44883 5.64190 5.68971 5.77385 5.88044 5.92960 5.93330 5.97171 6.06318 6.20021 6.25456 6.28223 6.88765 6.93989 7.24530 7.40803 7.64715 7.72843 8.51625 8.69897 9.17752 9.29191 10.70010 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.005221 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.140687 B = 5361.700109 C = 5764.434257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.137 4.137 5 C -0.157 4.157 6 C 0.148 3.852 7 H 0.099 0.901 8 N -0.733 5.733 9 C 0.700 3.300 10 O -0.583 6.583 11 N -0.727 5.727 12 C 0.263 3.737 13 H 0.085 0.915 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.840 5.840 18 Si 0.916 3.084 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.416 3.584 23 F -0.138 7.138 24 F -0.211 7.211 25 F -0.216 7.216 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.392 0.608 34 H 0.393 0.607 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 7.594 -12.124 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 H 0.116 0.884 4 C -0.174 4.174 5 C -0.196 4.196 6 C 0.041 3.959 7 H 0.117 0.883 8 N -0.389 5.389 9 C 0.400 3.600 10 O -0.460 6.460 11 N -0.379 5.379 12 C 0.156 3.844 13 H 0.102 0.898 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.359 3.641 23 F -0.119 7.119 24 F -0.193 7.193 25 F -0.198 7.198 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.145 7.891 -11.128 13.643 hybrid contribution -1.176 -0.983 -0.348 1.572 sum -1.031 6.907 -11.476 13.434 Atomic orbital electron populations 1.21642 0.94661 1.01554 1.01981 1.22940 0.96127 0.98805 0.96307 0.88361 1.23055 0.98453 0.99146 0.96774 1.23433 0.97393 1.02340 0.96468 1.21604 0.90539 0.87238 0.96560 0.88310 1.44772 1.38364 1.37265 1.18475 1.16068 0.82401 0.80099 0.81456 1.90910 1.36183 1.66572 1.52366 1.45261 1.36646 1.35217 1.20794 1.19584 0.98300 0.90335 0.76132 0.89754 1.20877 1.44251 0.94441 0.99296 0.90536 1.25082 0.94948 0.99688 0.94702 1.70411 1.40401 1.35006 1.01456 0.86210 0.79111 0.82720 0.77754 1.20219 1.20808 1.19570 1.23183 0.77573 0.76831 0.86492 1.93401 1.94729 1.79973 1.43780 1.92980 1.36644 1.96538 1.93093 1.93071 1.87730 1.42041 1.96996 0.92118 0.92682 0.92726 0.90299 0.91619 0.89556 0.90961 0.77381 0.77327 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.10 37.16 0.34 -0.99 16 2 C -0.12 -1.20 4.32 -89.80 -0.39 -1.59 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.14 -1.25 7.53 -25.77 -0.19 -1.44 16 5 C -0.16 -1.77 7.90 -25.77 -0.20 -1.97 16 6 C 0.15 1.95 4.16 -67.12 -0.28 1.67 16 7 H 0.10 1.53 7.50 -51.93 -0.39 1.14 16 8 N -0.73 -10.90 4.80 -57.88 -0.28 -11.18 16 9 C 0.70 14.17 8.10 -86.91 -0.70 13.47 16 10 O -0.58 -14.25 14.54 5.29 0.08 -14.17 16 11 N -0.73 -15.04 4.99 -59.82 -0.30 -15.34 16 12 C 0.26 6.62 2.21 -69.09 -0.15 6.46 16 13 H 0.08 2.39 7.58 -51.93 -0.39 2.00 16 14 C -0.55 -14.12 8.47 -34.44 -0.29 -14.42 16 15 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 16 C 0.06 1.69 5.20 -17.82 -0.09 1.59 16 17 N -0.84 -23.17 9.50 55.43 0.53 -22.65 16 18 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C 0.42 10.84 2.81 37.16 0.10 10.94 16 23 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 24 F -0.21 -5.26 16.94 2.25 0.04 -5.23 16 25 F -0.22 -5.65 15.68 2.25 0.04 -5.62 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.49 6.61 -51.93 -0.34 0.15 16 29 H 0.08 0.70 7.97 -51.93 -0.41 0.29 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.39 4.76 7.14 -40.82 -0.29 4.47 16 34 H 0.39 6.97 8.55 -40.82 -0.35 6.62 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -30.54 300.25 -6.49 -37.03 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.26 Total: 7.63 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -1.86 Total: 13.74 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.05 Total: -49.16 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 9 Polarization: -14.78 SS G_CDS: 0.10 Total: -14.68 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.54 -6.49 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333306809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.642 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds