Wall clock time and date at job start Tue Mar 31 2020 01:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 112.85560 * 2 1 4 4 C 1.53786 * 113.69185 * 228.72605 * 2 1 3 5 5 C 1.54057 * 87.07709 * 220.01255 * 4 2 1 6 6 C 1.53782 * 86.98645 * 25.43293 * 5 4 2 7 7 H 1.08995 * 113.61266 * 219.97812 * 6 5 4 8 8 N 1.46495 * 113.61360 * 89.15745 * 6 5 4 9 9 C 1.34784 * 119.99850 * 105.86476 * 8 6 5 10 10 O 1.21587 * 119.99512 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00131 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00037 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47054 * 324.99327 * 12 11 9 14 14 C 1.50697 * 109.47016 * 205.00057 * 12 11 9 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00021 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99891 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00032 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47419 * 89.99289 * 18 16 14 20 20 H 1.48499 * 109.47011 * 209.99851 * 18 16 14 21 21 H 1.48506 * 109.46838 * 329.99138 * 18 16 14 22 22 C 1.52997 * 109.47294 * 84.99596 * 12 11 9 23 23 F 1.39905 * 109.47157 * 179.97438 * 22 12 11 24 24 F 1.39900 * 109.47010 * 60.00333 * 22 12 11 25 25 F 1.39897 * 109.47422 * 300.00024 * 22 12 11 26 26 H 1.08999 * 109.47098 * 288.80552 * 1 2 3 27 27 H 1.08996 * 109.46755 * 48.80746 * 1 2 3 28 28 H 1.08998 * 109.47004 * 168.80501 * 1 2 3 29 29 H 1.08995 * 113.61383 * 334.55910 * 4 2 1 30 30 H 1.08999 * 113.60990 * 105.46617 * 4 2 1 31 31 H 1.09000 * 113.61397 * 270.92508 * 5 4 2 32 32 H 1.09004 * 113.69373 * 139.95146 * 5 4 2 33 33 H 0.97004 * 120.00600 * 285.86507 * 8 6 5 34 34 H 0.97005 * 119.99645 * 359.97438 * 11 9 8 35 35 H 0.97001 * 120.00022 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1479 -0.9290 -1.0584 5 6 3.1954 -1.3126 0.0041 6 6 2.1460 -0.9280 1.0604 7 1 2.5624 -0.3971 1.9164 8 7 1.2711 -2.0368 1.4492 9 6 1.4328 -2.6349 2.6462 10 8 2.3050 -2.2544 3.4030 11 7 0.6282 -3.6554 3.0038 12 6 0.8036 -4.3051 4.3051 13 1 1.8632 -4.3284 4.5597 14 6 0.2718 -5.7136 4.2390 15 1 -0.1544 -6.0873 3.3198 16 6 0.3286 -6.5249 5.3524 17 7 0.8473 -6.0696 6.4720 18 14 -0.3298 -8.2710 5.2703 19 1 0.7578 -9.1910 4.8508 20 1 -0.8309 -8.6745 6.6087 21 1 -1.4400 -8.3356 4.2860 22 6 0.0393 -3.5210 5.3737 23 9 0.2063 -4.1418 6.6163 24 9 -1.3206 -3.4912 5.0469 25 9 0.5330 -2.2134 5.4351 26 1 -0.3633 0.3313 0.9728 27 1 -0.3633 0.6768 -0.7733 28 1 -0.3633 -1.0081 -0.1995 29 1 1.4975 -1.7542 -1.3482 30 1 2.5672 -0.3986 -1.9134 31 1 4.0732 -0.6664 0.0051 32 1 3.4491 -2.3727 0.0063 33 1 0.5755 -2.3407 0.8453 34 1 -0.0674 -3.9592 2.3998 35 1 0.8876 -6.6405 7.2552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333306809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:21 Heat of formation + Delta-G solvation = -170.923665 kcal Electronic energy + Delta-G solvation = -23314.527690 eV Core-core repulsion = 19319.070317 eV Total energy + Delta-G solvation = -3995.457372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.40020 -48.03447 -47.71216 -41.38116 -39.57985 -36.45128 -34.63877 -33.86322 -30.73014 -30.05487 -26.60329 -25.91747 -23.84597 -23.61572 -22.05202 -20.18450 -19.98615 -18.81695 -18.80789 -18.57863 -17.74773 -16.86721 -16.59758 -16.20869 -15.87992 -15.44170 -15.05624 -14.95203 -14.68554 -14.46921 -14.41644 -14.30423 -14.26939 -14.04024 -13.97900 -13.84343 -13.05561 -12.78511 -12.60549 -12.49810 -12.42054 -12.20386 -11.76101 -11.57803 -11.27376 -11.24781 -11.04151 -10.67368 -10.24150 -9.72932 -8.20244 -6.51295 1.47132 1.48801 1.59572 1.73177 2.13755 2.37920 2.57242 2.95436 3.30929 3.54325 3.75297 3.80400 3.89171 4.03229 4.03378 4.20903 4.54967 4.66185 4.69937 4.88534 4.92254 4.99074 5.08581 5.15554 5.17646 5.39970 5.42171 5.44257 5.53521 5.66217 5.76947 6.15513 6.54057 7.16836 7.22121 7.67317 8.72668 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.005221 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.140687 B = 5361.700109 C = 5764.434257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.114 0.886 4 C -0.121 4.121 5 C -0.156 4.156 6 C 0.123 3.877 7 H 0.068 0.932 8 N -0.710 5.710 9 C 0.696 3.304 10 O -0.630 6.630 11 N -0.720 5.720 12 C 0.271 3.729 13 H 0.044 0.956 14 C -0.561 4.561 15 H 0.093 0.907 16 C 0.014 3.986 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.258 1.258 22 C 0.412 3.588 23 F -0.151 7.151 24 F -0.203 7.203 25 F -0.220 7.220 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.409 0.591 34 H 0.410 0.590 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 7.348 -14.641 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.132 0.868 4 C -0.159 4.159 5 C -0.195 4.195 6 C 0.017 3.983 7 H 0.087 0.913 8 N -0.366 5.366 9 C 0.396 3.604 10 O -0.511 6.511 11 N -0.374 5.374 12 C 0.163 3.837 13 H 0.062 0.938 14 C -0.597 4.597 15 H 0.111 0.889 16 C -0.191 4.191 17 N -0.510 5.510 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.182 1.182 22 C 0.356 3.644 23 F -0.132 7.132 24 F -0.185 7.185 25 F -0.202 7.202 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.246 0.754 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.969 7.668 -13.731 15.757 hybrid contribution -0.803 -0.817 0.427 1.223 sum -1.771 6.851 -13.304 15.069 Atomic orbital electron populations 1.21663 0.94136 1.02367 1.01777 1.22920 0.96506 0.98947 0.94299 0.86834 1.23002 0.97198 0.99053 0.96607 1.23444 0.97973 1.01624 0.96473 1.21942 0.92038 0.87569 0.96749 0.91323 1.44558 1.38603 1.36737 1.16708 1.16262 0.81711 0.79935 0.82512 1.90877 1.38084 1.67859 1.54242 1.44982 1.37379 1.35339 1.19702 1.19158 0.95864 0.90960 0.77697 0.93783 1.21222 1.44048 0.94498 0.99981 0.88921 1.26023 0.94984 1.03866 0.94252 1.70546 1.41606 1.36594 1.02212 0.85131 0.78806 0.77444 0.77760 1.19561 1.21039 1.18167 1.23360 0.78011 0.76713 0.86319 1.93375 1.94856 1.80253 1.44736 1.92979 1.36025 1.96510 1.92981 1.93061 1.87834 1.42258 1.96998 0.93776 0.90642 0.92243 0.89677 0.89402 0.88365 0.92564 0.75413 0.75424 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.10 71.98 0.66 -1.63 16 2 C -0.11 -1.84 4.32 -10.26 -0.04 -1.88 16 3 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -1.82 7.53 31.22 0.24 -1.58 16 5 C -0.16 -3.29 7.90 31.21 0.25 -3.04 16 6 C 0.12 3.18 4.16 45.52 0.19 3.37 16 7 H 0.07 2.20 7.50 -2.39 -0.02 2.18 16 8 N -0.71 -20.65 4.80 -455.28 -2.19 -22.84 16 9 C 0.70 28.53 8.10 179.05 1.45 29.98 16 10 O -0.63 -31.95 14.54 -3.99 -0.06 -32.01 16 11 N -0.72 -29.81 4.99 -461.42 -2.30 -32.11 16 12 C 0.27 13.90 2.21 44.24 0.10 14.00 16 13 H 0.04 2.63 7.58 -2.39 -0.02 2.61 16 14 C -0.56 -28.51 8.47 25.60 0.22 -28.29 16 15 H 0.09 4.31 7.74 -2.91 -0.02 4.28 16 16 C 0.01 0.72 5.20 84.65 0.44 1.16 16 17 N -0.88 -49.06 9.50 21.45 0.20 -48.86 16 18 Si 0.99 40.57 29.54 68.60 2.03 42.60 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 C 0.41 21.88 2.81 71.98 0.20 22.08 16 23 F -0.15 -8.68 12.91 44.97 0.58 -8.10 16 24 F -0.20 -10.10 16.94 44.97 0.76 -9.34 16 25 F -0.22 -11.75 15.68 44.97 0.71 -11.05 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.89 6.61 -2.39 -0.02 0.87 16 29 H 0.08 1.20 7.97 -2.39 -0.02 1.18 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.41 9.18 7.14 -92.70 -0.66 8.52 16 34 H 0.41 14.03 8.55 -92.70 -0.79 13.23 16 35 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -67.18 300.25 3.11 -64.07 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.31 Total: 23.45 kcal Atomic # 6 Polarization: 30.49 SS G_CDS: 3.69 Total: 34.17 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.28 Total: -103.81 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.06 Total: -32.01 kcal Atomic # 9 Polarization: -30.53 SS G_CDS: 2.05 Total: -28.48 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -67.18 3.11 -64.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333306809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.852 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds