Wall clock time and date at job start Tue Mar 31 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35521 * 116.99966 * 2 1 4 4 C 1.38814 * 120.90090 * 0.25200 * 3 2 1 5 5 C 1.38712 * 119.20458 * 180.24522 * 4 3 2 6 6 O 1.35516 * 119.47562 * 179.77068 * 5 4 3 7 7 N 1.32596 * 121.04794 * 359.49858 * 5 4 3 8 8 C 1.31611 * 121.97950 * 0.25073 * 7 5 4 9 9 C 1.39541 * 120.66768 * 0.02562 * 8 7 5 10 10 C 1.47343 * 120.55319 * 179.97438 * 9 8 7 11 11 O 1.21616 * 120.00320 * 131.05309 * 10 9 8 12 12 N 1.34776 * 120.00379 * 311.04995 * 10 9 8 13 13 C 1.46508 * 119.99746 * 4.46163 * 12 10 9 14 14 C 1.46498 * 120.00361 * 184.45551 * 12 10 9 15 15 H 1.09000 * 109.46963 * 0.02562 * 14 12 10 16 16 C 1.53003 * 109.46964 * 120.00424 * 14 12 10 17 17 C 1.50697 * 109.47247 * 240.00391 * 14 12 10 18 18 H 1.08006 * 120.00403 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99845 * 180.02562 * 17 14 12 20 20 N 1.31509 * 119.99781 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99706 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47297 * 89.99898 * 21 19 17 23 23 H 1.48506 * 109.46900 * 209.99315 * 21 19 17 24 24 H 1.48503 * 109.47314 * 329.99498 * 21 19 17 25 25 H 1.09003 * 109.46684 * 300.00726 * 1 2 3 26 26 H 1.09004 * 109.46773 * 59.99817 * 1 2 3 27 27 H 1.08994 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.39678 * 0.02562 * 4 3 2 29 29 H 0.96697 * 114.00660 * 269.72812 * 6 5 4 30 30 H 1.08000 * 119.66728 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46740 * 93.08985 * 13 12 10 32 32 H 1.08989 * 109.47140 * 213.08914 * 13 12 10 33 33 H 1.08993 * 109.47039 * 333.09414 * 13 12 10 34 34 H 1.09000 * 109.47088 * 60.00312 * 16 14 12 35 35 H 1.09003 * 109.47180 * 179.97438 * 16 14 12 36 36 H 1.09003 * 109.46921 * 300.00467 * 16 14 12 37 37 H 0.97002 * 119.99638 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3067 2.3834 0.0052 5 6 1.9727 3.6002 -0.0001 6 8 1.2580 4.7516 0.0002 7 7 3.2975 3.6546 -0.0002 8 6 4.0398 2.5678 -0.0001 9 6 3.4501 1.3032 -0.0005 10 6 4.2835 0.0881 -0.0010 11 8 4.0572 -0.8049 0.7930 12 7 5.2968 -0.0338 -0.8813 13 6 5.6317 1.0805 -1.7715 14 6 6.0633 -1.2805 -0.9479 15 1 5.6714 -1.9874 -0.2166 16 6 5.9425 -1.8790 -2.3508 17 6 7.5121 -0.9961 -0.6461 18 1 7.8303 0.0125 -0.4270 19 6 8.4318 -2.0235 -0.6507 20 7 8.0444 -3.2515 -0.9180 21 14 10.2275 -1.6711 -0.2759 22 1 10.4627 -1.7992 1.1848 23 1 11.0846 -2.6422 -1.0023 24 1 10.5629 -0.2918 -0.7122 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.2271 2.3513 0.0098 29 1 1.0505 5.0861 -0.8830 30 1 5.1162 2.6557 0.0002 31 1 6.4094 1.6911 -1.3125 32 1 5.9911 0.6897 -2.7234 33 1 4.7440 1.6898 -1.9407 34 1 6.3342 -1.1722 -3.0823 35 1 6.5132 -2.8064 -2.4006 36 1 4.8946 -2.0846 -2.5692 37 1 8.6914 -3.9742 -0.9209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333792346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:42 Heat of formation + Delta-G solvation = -61.995404 kcal Electronic energy + Delta-G solvation = -22261.392328 eV Core-core repulsion = 18812.515180 eV Total energy + Delta-G solvation = -3448.877148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04868 -38.87994 -38.74095 -36.82284 -35.30201 -32.92677 -31.65537 -30.88530 -29.05008 -27.65034 -26.27246 -25.21555 -24.15067 -23.09365 -21.31355 -19.42826 -18.87052 -17.59872 -17.14397 -16.85354 -16.16603 -16.01950 -15.48526 -15.32386 -14.73484 -14.62724 -14.30101 -14.04752 -13.33777 -13.04956 -12.81225 -12.58360 -12.17030 -12.06425 -11.76069 -11.66847 -11.53078 -11.43151 -11.03586 -10.81560 -10.70531 -10.24307 -10.15657 -9.82914 -9.24161 -9.17255 -9.03318 -8.76571 -8.40790 -7.59543 -6.05559 -4.13412 0.66494 1.15048 2.95344 3.11007 3.29369 3.35977 3.37736 3.45721 3.68933 3.92279 4.41437 4.43364 4.68191 4.85581 4.89212 4.94452 5.17468 5.25981 5.28606 5.34748 5.50553 5.63612 5.74721 6.04158 6.20704 6.28876 6.76760 6.82588 6.99850 7.06069 7.26097 7.42634 7.52187 7.72125 7.77253 8.02078 8.19920 8.49882 8.83816 9.02515 9.52944 10.99809 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.004774 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.196613 B = 5863.195268 C = 6532.443975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.283 6.283 3 C 0.223 3.777 4 C -0.285 4.285 5 C 0.353 3.647 6 O -0.481 6.481 7 N -0.527 5.527 8 C 0.190 3.810 9 C -0.209 4.209 10 C 0.557 3.443 11 O -0.532 6.532 12 N -0.586 5.586 13 C 0.081 3.919 14 C 0.259 3.741 15 H 0.065 0.935 16 C -0.147 4.147 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.148 0.852 29 H 0.402 0.598 30 H 0.177 0.823 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.031 0.969 35 H 0.095 0.905 36 H 0.011 0.989 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 11.430 -3.361 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.192 6.192 3 C 0.168 3.832 4 C -0.308 4.308 5 C 0.175 3.825 6 O -0.289 6.289 7 N -0.249 5.249 8 C 0.032 3.968 9 C -0.216 4.216 10 C 0.342 3.658 11 O -0.409 6.409 12 N -0.317 5.317 13 C -0.063 4.063 14 C 0.159 3.841 15 H 0.082 0.918 16 C -0.206 4.206 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.125 0.875 28 H 0.166 0.834 29 H 0.260 0.740 30 H 0.194 0.806 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.030 0.970 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.681 11.279 -2.380 17.890 hybrid contribution 0.264 -0.283 -0.346 0.520 sum -13.417 10.996 -2.726 17.560 Atomic orbital electron populations 1.23223 0.77843 1.04779 1.01455 1.86281 1.21641 1.25173 1.86139 1.19069 0.90811 0.84673 0.88653 1.21997 1.01887 0.91680 1.15210 1.18928 0.86690 0.84803 0.92087 1.84712 1.71357 1.38827 1.33978 1.67220 1.06337 1.33239 1.18143 1.22834 1.00180 0.84526 0.89223 1.20738 0.91626 0.97164 1.12028 1.17610 0.80751 0.85418 0.81985 1.90774 1.70400 1.41101 1.38671 1.48176 1.31384 1.17095 1.35012 1.21745 0.99280 0.89762 0.95484 1.18978 0.90025 0.80071 0.95000 0.91757 1.22101 0.97671 1.03138 0.97650 1.21310 0.92017 0.94733 1.48261 0.92161 1.24890 0.99052 0.94907 0.94920 1.69878 1.34561 0.99585 1.48614 0.86486 0.84335 0.78040 0.78466 1.20613 1.21182 1.19879 0.92184 0.92338 0.87510 0.83444 0.73973 0.80624 0.92748 0.90769 0.92923 0.95043 0.88699 0.96961 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 101.05 0.99 1.20 16 2 O -0.28 -4.43 9.68 -24.47 -0.24 -4.67 16 3 C 0.22 3.44 6.71 -38.36 -0.26 3.18 16 4 C -0.29 -3.47 9.02 -39.19 -0.35 -3.82 16 5 C 0.35 4.48 7.73 -17.05 -0.13 4.35 16 6 O -0.48 -4.85 13.54 -18.24 -0.25 -5.10 16 7 N -0.53 -7.62 10.36 -13.04 -0.14 -7.76 16 8 C 0.19 2.86 8.78 -17.16 -0.15 2.71 16 9 C -0.21 -3.63 4.92 -104.70 -0.52 -4.14 16 10 C 0.56 12.14 7.00 -12.56 -0.09 12.05 16 11 O -0.53 -13.78 15.95 -0.95 -0.02 -13.80 16 12 N -0.59 -12.65 2.75 -176.56 -0.49 -13.14 16 13 C 0.08 1.37 8.36 59.85 0.50 1.87 16 14 C 0.26 6.63 2.63 -69.08 -0.18 6.45 16 15 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 16 C -0.15 -3.51 8.94 37.16 0.33 -3.18 16 17 C -0.52 -14.10 8.37 -34.44 -0.29 -14.39 16 18 H 0.06 1.58 7.56 -52.48 -0.40 1.19 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 21 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.06 0.48 7.70 -51.93 -0.40 0.08 16 26 H 0.06 0.42 7.72 -51.93 -0.40 0.02 16 27 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.15 1.33 6.45 -52.49 -0.34 0.99 16 29 H 0.40 1.85 9.06 45.56 0.41 2.27 16 30 H 0.18 2.43 6.56 -52.49 -0.34 2.08 16 31 H 0.05 0.86 7.48 -51.93 -0.39 0.47 16 32 H 0.07 1.24 6.44 -51.94 -0.33 0.91 16 33 H 0.05 0.75 5.66 -51.93 -0.29 0.46 16 34 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 35 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 310.94 15.07 4.69 4.69 Total: -1.00 -34.49 310.94 -4.55 -39.04 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.48 Total: 1.25 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.23 Total: 7.94 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.01 Total: -45.33 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.50 Total: -23.57 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.49 -4.55 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333792346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.960 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds