Wall clock time and date at job start Tue Mar 31 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35521 * 116.99966 * 2 1 4 4 C 1.38814 * 120.90090 * 0.25200 * 3 2 1 5 5 C 1.38712 * 119.20458 * 180.24522 * 4 3 2 6 6 O 1.35516 * 119.47562 * 179.77068 * 5 4 3 7 7 N 1.32596 * 121.04794 * 359.49858 * 5 4 3 8 8 C 1.31611 * 121.97950 * 0.25073 * 7 5 4 9 9 C 1.39541 * 120.66768 * 0.02562 * 8 7 5 10 10 C 1.47343 * 120.55319 * 179.97438 * 9 8 7 11 11 O 1.21616 * 120.00320 * 131.05309 * 10 9 8 12 12 N 1.34776 * 120.00379 * 311.04995 * 10 9 8 13 13 C 1.46508 * 119.99746 * 4.46163 * 12 10 9 14 14 C 1.46498 * 120.00361 * 184.45551 * 12 10 9 15 15 H 1.09000 * 109.46963 * 0.02562 * 14 12 10 16 16 C 1.53003 * 109.46964 * 120.00424 * 14 12 10 17 17 C 1.50697 * 109.47247 * 240.00391 * 14 12 10 18 18 H 1.08006 * 120.00403 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99845 * 180.02562 * 17 14 12 20 20 N 1.31509 * 119.99781 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99706 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47297 * 89.99898 * 21 19 17 23 23 H 1.48506 * 109.46900 * 209.99315 * 21 19 17 24 24 H 1.48503 * 109.47314 * 329.99498 * 21 19 17 25 25 H 1.09003 * 109.46684 * 300.00726 * 1 2 3 26 26 H 1.09004 * 109.46773 * 59.99817 * 1 2 3 27 27 H 1.08994 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.39678 * 0.02562 * 4 3 2 29 29 H 0.96697 * 114.00660 * 269.72812 * 6 5 4 30 30 H 1.08000 * 119.66728 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46740 * 93.08985 * 13 12 10 32 32 H 1.08989 * 109.47140 * 213.08914 * 13 12 10 33 33 H 1.08993 * 109.47039 * 333.09414 * 13 12 10 34 34 H 1.09000 * 109.47088 * 60.00312 * 16 14 12 35 35 H 1.09003 * 109.47180 * 179.97438 * 16 14 12 36 36 H 1.09003 * 109.46921 * 300.00467 * 16 14 12 37 37 H 0.97002 * 119.99638 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3067 2.3834 0.0052 5 6 1.9727 3.6002 -0.0001 6 8 1.2580 4.7516 0.0002 7 7 3.2975 3.6546 -0.0002 8 6 4.0398 2.5678 -0.0001 9 6 3.4501 1.3032 -0.0005 10 6 4.2835 0.0881 -0.0010 11 8 4.0572 -0.8049 0.7930 12 7 5.2968 -0.0338 -0.8813 13 6 5.6317 1.0805 -1.7715 14 6 6.0633 -1.2805 -0.9479 15 1 5.6714 -1.9874 -0.2166 16 6 5.9425 -1.8790 -2.3508 17 6 7.5121 -0.9961 -0.6461 18 1 7.8303 0.0125 -0.4270 19 6 8.4318 -2.0235 -0.6507 20 7 8.0444 -3.2515 -0.9180 21 14 10.2275 -1.6711 -0.2759 22 1 10.4627 -1.7992 1.1848 23 1 11.0846 -2.6422 -1.0023 24 1 10.5629 -0.2918 -0.7122 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.2271 2.3513 0.0098 29 1 1.0505 5.0861 -0.8830 30 1 5.1162 2.6557 0.0002 31 1 6.4094 1.6911 -1.3125 32 1 5.9911 0.6897 -2.7234 33 1 4.7440 1.6898 -1.9407 34 1 6.3342 -1.1722 -3.0823 35 1 6.5132 -2.8064 -2.4006 36 1 4.8946 -2.0846 -2.5692 37 1 8.6914 -3.9742 -0.9209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333792346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:42 Heat of formation + Delta-G solvation = -90.584146 kcal Electronic energy + Delta-G solvation = -22262.632029 eV Core-core repulsion = 18812.515180 eV Total energy + Delta-G solvation = -3450.116849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.18150 -40.38098 -39.79421 -37.81685 -37.13225 -34.83109 -32.82263 -32.23258 -30.66852 -28.51749 -27.76898 -27.28119 -25.42541 -24.13569 -22.97519 -20.61763 -20.24120 -18.75835 -18.60627 -18.13056 -17.87678 -17.26396 -16.98631 -16.35820 -16.26637 -15.85377 -15.54656 -15.49710 -14.81547 -14.44408 -14.20349 -14.13928 -13.55042 -13.44912 -13.00266 -12.95496 -12.90756 -12.70549 -12.65847 -12.53323 -12.46861 -12.15670 -12.08574 -11.17436 -11.09987 -10.57140 -10.45790 -10.22358 -9.98703 -9.35545 -8.12229 -6.28607 -0.42450 0.07550 1.44162 1.45787 1.55518 1.72976 2.01940 2.18911 2.41671 2.55063 2.59542 3.16066 3.43601 3.52620 3.73130 4.02234 4.17444 4.31230 4.33774 4.39731 4.44719 4.62324 4.66301 4.68431 4.80140 4.88900 5.00015 5.05809 5.21185 5.46985 5.60884 5.67835 6.02550 6.08426 6.16946 6.54414 6.74379 6.77747 6.78550 7.28276 7.45831 8.92407 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.004774 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.196613 B = 5863.195268 C = 6532.443975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.321 6.321 3 C 0.218 3.782 4 C -0.270 4.270 5 C 0.365 3.635 6 O -0.480 6.480 7 N -0.539 5.539 8 C 0.201 3.799 9 C -0.240 4.240 10 C 0.554 3.446 11 O -0.590 6.590 12 N -0.591 5.591 13 C 0.080 3.920 14 C 0.262 3.738 15 H 0.009 0.991 16 C -0.132 4.132 17 C -0.537 4.537 18 H 0.064 0.936 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.966 3.034 22 H -0.284 1.284 23 H -0.281 1.281 24 H -0.259 1.259 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.184 0.816 29 H 0.429 0.571 30 H 0.184 0.816 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.018 0.982 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.006 14.260 -4.158 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.162 3.838 4 C -0.292 4.292 5 C 0.188 3.812 6 O -0.292 6.292 7 N -0.262 5.262 8 C 0.043 3.957 9 C -0.246 4.246 10 C 0.342 3.658 11 O -0.472 6.472 12 N -0.321 5.321 13 C -0.062 4.062 14 C 0.161 3.839 15 H 0.027 0.973 16 C -0.191 4.191 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.184 4.184 20 N -0.557 5.557 21 Si 0.791 3.209 22 H -0.210 1.210 23 H -0.206 1.206 24 H -0.183 1.183 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.201 0.799 29 H 0.292 0.708 30 H 0.200 0.800 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.642 14.174 -3.229 20.633 hybrid contribution 0.378 -1.095 -0.089 1.162 sum -14.264 13.078 -3.318 19.634 Atomic orbital electron populations 1.23600 0.74932 1.06243 1.03540 1.86244 1.24845 1.25977 1.86048 1.19233 0.90356 0.85739 0.88425 1.22204 1.03363 0.90008 1.13610 1.19116 0.86327 0.85806 0.89971 1.84670 1.70615 1.37620 1.36282 1.67311 1.07376 1.32506 1.18963 1.22821 1.00594 0.83807 0.88468 1.20423 0.92243 0.95703 1.16267 1.18263 0.80563 0.86252 0.80748 1.90722 1.71820 1.43723 1.40891 1.48147 1.31087 1.17025 1.35830 1.21970 1.01088 0.88641 0.94545 1.18588 0.89891 0.81164 0.94277 0.97318 1.21882 0.97737 1.02277 0.97171 1.21575 0.92681 0.94984 1.48301 0.91762 1.25738 1.03379 0.94657 0.94673 1.70024 1.35930 1.00452 1.49319 0.85442 0.79085 0.78583 0.77812 1.21002 1.20629 1.18337 0.90513 0.89628 0.86639 0.79895 0.70821 0.79966 0.91442 0.90629 0.90013 0.93091 0.91163 0.96297 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.29 16 2 O -0.32 -9.95 9.68 -82.31 -0.80 -10.75 16 3 C 0.22 6.46 6.71 23.06 0.15 6.61 16 4 C -0.27 -5.67 9.02 22.52 0.20 -5.47 16 5 C 0.37 7.98 7.73 84.69 0.65 8.64 16 6 O -0.48 -7.57 13.54 -88.19 -1.19 -8.77 16 7 N -0.54 -14.15 10.36 -307.96 -3.19 -17.34 16 8 C 0.20 5.78 8.78 85.04 0.75 6.52 16 9 C -0.24 -8.26 4.92 -19.91 -0.10 -8.36 16 10 C 0.55 25.02 7.00 86.64 0.61 25.62 16 11 O -0.59 -32.54 15.95 1.86 0.03 -32.51 16 12 N -0.59 -26.12 2.75 -830.78 -2.29 -28.40 16 13 C 0.08 2.60 8.36 127.77 1.07 3.67 16 14 C 0.26 13.98 2.63 44.25 0.12 14.10 16 15 H 0.01 0.57 6.91 -2.39 -0.02 0.55 16 16 C -0.13 -6.47 8.94 71.98 0.64 -5.82 16 17 C -0.54 -29.40 8.37 25.60 0.21 -29.18 16 18 H 0.06 3.38 7.56 -2.91 -0.02 3.36 16 19 C 0.02 0.83 5.30 84.66 0.45 1.27 16 20 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 21 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H 0.08 1.03 7.70 -2.39 -0.02 1.01 16 26 H 0.09 0.96 7.72 -2.39 -0.02 0.94 16 27 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.18 2.43 6.45 -2.91 -0.02 2.41 16 29 H 0.43 1.89 9.06 -74.06 -0.67 1.22 16 30 H 0.18 4.81 6.56 -2.91 -0.02 4.79 16 31 H 0.07 2.02 7.48 -2.38 -0.02 2.01 16 32 H 0.08 2.43 6.44 -2.39 -0.02 2.42 16 33 H 0.08 2.19 5.66 -2.39 -0.01 2.18 16 34 H 0.05 2.23 6.68 -2.39 -0.02 2.22 16 35 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -78.58 310.94 1.15 -77.43 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.45 Total: 9.26 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 5.87 Total: 18.90 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -5.24 Total: -98.82 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -1.96 Total: -52.02 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -78.58 1.15 -77.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333792346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.158 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds