Wall clock time and date at job start Tue Mar 31 2020 01:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47121 * 2 1 4 4 C 1.50702 * 109.47264 * 239.99940 * 2 1 3 5 5 H 1.07997 * 119.99949 * 240.00632 * 4 2 1 6 6 C 1.37871 * 119.99712 * 60.00370 * 4 2 1 7 7 N 1.31518 * 120.00305 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00070 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46931 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47401 * 119.99697 * 8 6 4 11 11 H 1.48495 * 109.47580 * 240.00171 * 8 6 4 12 12 N 1.46501 * 109.46768 * 120.00068 * 2 1 3 13 13 C 1.46508 * 119.99961 * 59.99977 * 12 2 1 14 14 C 1.34776 * 120.00399 * 239.99853 * 12 2 1 15 15 O 1.21591 * 119.99408 * 359.97438 * 14 12 2 16 16 N 1.34768 * 120.00506 * 180.02562 * 14 12 2 17 17 C 1.46502 * 120.00173 * 174.86468 * 16 14 12 18 18 C 1.52999 * 115.55179 * 293.81005 * 17 16 14 19 19 F 1.39907 * 109.46660 * 64.18310 * 18 17 16 20 20 F 1.39891 * 109.47503 * 184.17860 * 18 17 16 21 21 F 1.39895 * 109.47042 * 304.18712 * 18 17 16 22 22 C 1.53005 * 117.50023 * 148.14291 * 17 16 14 23 23 C 1.53000 * 117.49750 * 79.48207 * 17 16 14 24 24 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47331 * 300.00075 * 1 2 3 26 26 H 1.09005 * 109.46678 * 60.00111 * 1 2 3 27 27 H 0.97003 * 119.99900 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.46799 * 89.99806 * 13 12 2 29 29 H 1.08994 * 109.47150 * 330.00015 * 13 12 2 30 30 H 1.08997 * 109.46747 * 209.99392 * 13 12 2 31 31 H 0.97001 * 119.99858 * 354.85763 * 16 14 12 32 32 H 1.08996 * 117.49454 * 359.97438 * 22 17 16 33 33 H 1.08994 * 117.50004 * 145.01952 * 22 17 16 34 34 H 1.08999 * 117.49645 * 214.98023 * 23 17 16 35 35 H 1.08998 * 117.50140 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4826 7 7 0.9429 0.8297 -2.6033 8 14 2.3226 -1.1194 -4.0079 9 1 3.1485 -2.2856 -3.6038 10 1 1.1679 -1.5865 -4.8166 11 1 3.1474 -0.1857 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0933 1.4280 14 6 2.7931 -0.0358 2.0834 15 8 3.0873 1.1282 1.8908 16 7 3.2427 -0.6712 3.1836 17 6 4.1753 0.0037 4.0897 18 6 5.5592 0.3025 3.5098 19 9 5.4352 1.2077 2.4503 20 9 6.3718 0.8571 4.5042 21 9 6.1358 -0.8841 3.0443 22 6 4.0931 -0.3459 5.5770 23 6 3.5918 1.0127 5.0808 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.7083 1.1609 -3.4844 28 1 2.4156 -2.7378 0.9716 29 1 0.6903 -2.3002 0.9846 30 1 1.6237 -2.2853 2.5002 31 1 2.9487 -1.5755 3.3755 32 1 3.3448 -1.0778 5.8813 33 1 5.0248 -0.3627 6.1423 34 1 4.1940 1.8892 5.3200 35 1 2.5140 1.1740 5.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333848370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:49 Heat of formation + Delta-G solvation = -140.318034 kcal Electronic energy + Delta-G solvation = -23412.883519 eV Core-core repulsion = 19418.753307 eV Total energy + Delta-G solvation = -3994.130213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.83366 -47.46735 -47.14912 -39.76032 -37.53695 -35.20340 -33.26749 -32.04865 -29.08668 -26.74648 -26.14893 -25.18250 -22.94253 -22.27371 -20.58955 -19.22219 -18.40722 -18.01584 -17.69970 -17.29918 -16.30578 -15.68164 -15.08180 -14.68843 -14.38343 -14.19511 -14.04698 -13.94869 -13.77715 -13.40081 -13.32913 -13.14999 -12.67166 -12.58553 -12.26402 -11.81549 -11.65565 -11.52480 -11.15110 -11.04216 -10.84740 -10.79040 -10.64179 -10.22104 -10.14283 -9.34701 -9.10448 -8.96716 -8.40774 -7.55566 -6.04654 -4.11916 2.64017 2.99191 3.21204 3.28183 3.36412 3.39975 3.76697 3.88094 4.22312 4.33736 4.37539 4.50146 4.83790 4.87146 5.11696 5.26799 5.27329 5.58037 5.65383 5.81574 6.00559 6.23623 6.57040 6.70585 6.80232 6.98824 7.14164 7.49762 7.72490 7.83321 8.08638 8.24362 8.67837 8.89632 9.26447 9.55242 11.00760 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025208 B = 0.005382 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.512998 B = 5200.963728 C = 5598.232977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.273 3.727 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.605 5.605 13 C 0.090 3.910 14 C 0.695 3.305 15 O -0.571 6.571 16 N -0.717 5.717 17 C 0.056 3.944 18 C 0.478 3.522 19 F -0.152 7.152 20 F -0.186 7.186 21 F -0.182 7.182 22 C -0.148 4.148 23 C -0.139 4.139 24 H 0.029 0.971 25 H 0.011 0.989 26 H 0.094 0.906 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.401 0.599 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -4.895 16.298 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.341 5.341 13 C -0.055 4.055 14 C 0.396 3.604 15 O -0.447 6.447 16 N -0.376 5.376 17 C -0.036 4.036 18 C 0.422 3.578 19 F -0.133 7.133 20 F -0.167 7.167 21 F -0.163 7.163 22 C -0.185 4.185 23 C -0.178 4.178 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.239 0.761 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.202 -3.918 15.892 16.899 hybrid contribution 0.412 -1.051 -1.014 1.518 sum 4.614 -4.969 14.878 16.350 Atomic orbital electron populations 1.22112 0.98315 0.99269 1.00854 1.18888 0.90544 0.94365 0.78953 0.91674 1.21375 1.31582 1.12945 0.90296 0.92285 1.24883 0.95001 0.95002 0.98939 1.69889 1.36525 1.22669 1.23613 0.86440 0.78565 0.79596 0.82779 1.19865 1.20964 1.20915 1.47556 1.51384 1.11417 1.23701 1.21472 1.01999 0.83700 0.98305 1.16032 0.79756 0.85160 0.79444 1.90935 1.62145 1.15053 1.76578 1.44523 1.48955 1.18685 1.25487 1.20834 0.88213 1.06843 0.87720 1.19802 0.86428 0.74809 0.76781 1.93359 1.95804 1.67165 1.56925 1.93128 1.75550 1.86035 1.62005 1.93168 1.86387 1.47497 1.89279 1.23474 1.04688 1.00096 0.90256 1.23435 1.03182 0.93438 0.97722 0.95181 0.96990 0.88725 0.92766 0.93340 0.90525 0.93854 0.76116 0.86722 0.86616 0.87062 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.16 16 2 C 0.27 7.02 2.64 -69.08 -0.18 6.84 16 3 H 0.07 1.96 6.90 -51.93 -0.36 1.60 16 4 C -0.52 -14.34 8.37 -34.44 -0.29 -14.62 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.61 -12.98 2.75 -181.00 -0.50 -13.48 16 13 C 0.09 1.47 9.49 59.85 0.57 2.04 16 14 C 0.69 14.62 8.04 -86.93 -0.70 13.92 16 15 O -0.57 -14.29 13.42 5.29 0.07 -14.22 16 16 N -0.72 -11.15 5.32 -52.41 -0.28 -11.43 16 17 C 0.06 0.78 1.89 -131.82 -0.25 0.53 16 18 C 0.48 7.63 3.17 37.16 0.12 7.74 16 19 F -0.15 -3.07 14.80 2.25 0.03 -3.04 16 20 F -0.19 -2.54 15.89 2.25 0.04 -2.50 16 21 F -0.18 -2.96 17.31 2.25 0.04 -2.92 16 22 C -0.15 -1.31 9.89 -26.69 -0.26 -1.57 16 23 C -0.14 -1.59 9.91 -26.69 -0.26 -1.85 16 24 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.27 6.43 -51.93 -0.33 0.93 16 30 H 0.04 0.53 6.29 -51.93 -0.33 0.20 16 31 H 0.40 4.98 6.53 -40.82 -0.27 4.72 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.12 0.86 7.66 -51.93 -0.40 0.46 16 34 H 0.11 1.18 7.90 -51.93 -0.41 0.77 16 35 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -32.49 302.28 -5.44 -37.93 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -3.98 Total: 1.95 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -1.02 Total: 11.54 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.15 Total: -49.64 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.11 Total: -8.46 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.49 -5.44 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333848370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.385 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds