Wall clock time and date at job start Tue Mar 31 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46714 * 2 1 4 4 C 1.50694 * 109.47297 * 120.00424 * 2 1 3 5 5 H 1.07997 * 120.00340 * 114.71989 * 4 2 1 6 6 C 1.37882 * 119.99762 * 294.72261 * 4 2 1 7 7 N 1.31516 * 119.99965 * 161.68936 * 6 4 2 8 8 Si 1.86799 * 120.00051 * 341.96862 * 6 4 2 9 9 H 1.48497 * 109.46892 * 179.72569 * 8 6 4 10 10 H 1.48495 * 109.46810 * 299.72162 * 8 6 4 11 11 H 1.48495 * 109.47259 * 59.72452 * 8 6 4 12 12 N 1.46499 * 109.46867 * 240.00468 * 2 1 3 13 13 C 1.46503 * 120.00041 * 299.99535 * 12 2 1 14 14 C 1.34771 * 120.00278 * 119.99843 * 12 2 1 15 15 O 1.21592 * 119.99914 * 0.02562 * 14 12 2 16 16 N 1.34776 * 120.00186 * 179.97438 * 14 12 2 17 17 C 1.46510 * 120.00015 * 183.51745 * 16 14 12 18 18 C 1.52993 * 115.54853 * 293.16061 * 17 16 14 19 19 F 1.39903 * 109.47242 * 62.09449 * 18 17 16 20 20 F 1.39899 * 109.47234 * 182.09784 * 18 17 16 21 21 F 1.39908 * 109.47334 * 302.09492 * 18 17 16 22 22 C 1.53000 * 117.49526 * 147.49067 * 17 16 14 23 23 C 1.52994 * 117.49751 * 78.82994 * 17 16 14 24 24 H 1.08999 * 109.47426 * 174.96473 * 1 2 3 25 25 H 1.09001 * 109.47106 * 294.96058 * 1 2 3 26 26 H 1.09001 * 109.47557 * 54.96638 * 1 2 3 27 27 H 0.97005 * 119.99703 * 355.20114 * 7 6 4 28 28 H 1.09000 * 109.47150 * 90.00220 * 13 12 2 29 29 H 1.08999 * 109.47201 * 210.00210 * 13 12 2 30 30 H 1.08999 * 109.46987 * 330.00639 * 13 12 2 31 31 H 0.96995 * 120.00146 * 3.52260 * 16 14 12 32 32 H 1.08993 * 117.50044 * 359.97438 * 22 17 16 33 33 H 1.08999 * 117.49355 * 145.02396 * 22 17 16 34 34 H 1.09001 * 117.50326 * 214.98198 * 23 17 16 35 35 H 1.09009 * 117.49914 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5811 -1.6356 1.1335 6 6 1.7913 -0.1794 2.4798 7 7 1.8953 -0.9390 3.5483 8 14 1.3095 1.6169 2.6540 9 1 1.1013 1.9365 4.0892 10 1 2.3916 2.4748 2.1079 11 1 0.0528 1.8674 1.9037 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0872 1.1284 -1.8907 16 7 3.2427 -0.6710 -3.1836 17 6 4.1474 0.0167 -4.1084 18 6 3.5417 1.1991 -4.8671 19 9 3.1473 2.1850 -3.9561 20 9 4.4949 1.7285 -5.7435 21 9 2.4287 0.7652 -5.5954 22 6 5.1897 -0.8323 -4.8390 23 6 5.6226 0.1113 -3.7140 24 1 -0.3634 -1.0237 -0.0902 25 1 -0.3633 0.4337 0.9317 26 1 -0.3634 0.5899 -0.8415 27 1 2.0729 -1.8879 3.4534 28 1 0.7375 -2.1443 -1.9994 29 1 2.4629 -2.5818 -1.9865 30 1 1.5295 -2.5968 -0.4710 31 1 2.9673 -1.5835 -3.3633 32 1 5.2027 -1.9021 -4.6313 33 1 5.4443 -0.5479 -5.8600 34 1 6.1618 1.0159 -3.9953 35 1 5.9200 -0.3377 -2.7662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333848375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:51 Heat of formation + Delta-G solvation = -140.592375 kcal Electronic energy + Delta-G solvation = -23454.861625 eV Core-core repulsion = 19460.719516 eV Total energy + Delta-G solvation = -3994.142109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.92223 -47.55832 -47.23552 -39.89563 -37.65006 -35.37452 -33.33150 -32.17536 -29.80415 -26.83738 -26.27448 -24.76650 -22.99325 -22.32418 -20.58770 -19.22421 -18.48297 -18.10851 -17.79130 -17.60478 -17.23853 -15.76907 -15.09849 -14.88746 -14.40590 -14.21945 -14.13417 -13.87731 -13.74345 -13.50675 -13.41976 -13.24199 -12.89184 -12.62276 -12.34050 -11.98918 -11.85127 -11.80165 -11.54076 -11.39662 -11.13175 -10.88278 -10.48511 -9.99332 -9.72680 -9.43414 -9.07838 -9.05759 -8.35191 -7.77634 -6.49012 -4.14002 2.55366 2.88952 3.12665 3.40682 3.50852 3.62821 3.65060 3.80254 4.16005 4.28025 4.29662 4.48314 4.75623 4.78757 5.06315 5.20225 5.23141 5.49812 5.62199 5.78324 5.84756 6.16303 6.33010 6.43794 6.47827 6.60623 6.83006 6.96692 7.39568 7.57261 7.90072 8.31188 8.48459 8.80549 9.12643 9.52837 10.86759 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.005415 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.749675 B = 5169.687276 C = 5374.218169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.250 3.750 3 H 0.057 0.943 4 C -0.611 4.611 5 H 0.061 0.939 6 C 0.040 3.960 7 N -0.900 5.900 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.273 1.273 12 N -0.600 5.600 13 C 0.086 3.914 14 C 0.696 3.304 15 O -0.572 6.572 16 N -0.715 5.715 17 C 0.054 3.946 18 C 0.479 3.521 19 F -0.150 7.150 20 F -0.185 7.185 21 F -0.184 7.184 22 C -0.146 4.146 23 C -0.141 4.141 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.268 0.732 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.402 0.598 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -1.938 -17.980 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.148 3.852 3 H 0.075 0.925 4 C -0.649 4.649 5 H 0.079 0.921 6 C -0.166 4.166 7 N -0.533 5.533 8 Si 0.861 3.139 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.199 1.199 12 N -0.334 5.334 13 C -0.058 4.058 14 C 0.397 3.603 15 O -0.448 6.448 16 N -0.374 5.374 17 C -0.039 4.039 18 C 0.422 3.578 19 F -0.131 7.131 20 F -0.166 7.166 21 F -0.165 7.165 22 C -0.183 4.183 23 C -0.179 4.179 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.240 0.760 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.851 0.112 -16.633 17.073 hybrid contribution -0.009 -1.687 -1.349 2.160 sum 3.843 -1.576 -17.981 18.455 Atomic orbital electron populations 1.22524 0.98787 1.00322 1.00305 1.19121 0.90100 0.94605 0.81386 0.92514 1.22163 1.40496 1.11319 0.90933 0.92094 1.25644 0.93805 1.05430 0.91728 1.70871 1.44096 1.07271 1.31036 0.84224 0.77653 0.75897 0.76101 1.20996 1.20413 1.19890 1.47220 1.51580 1.11442 1.23187 1.21542 0.98315 0.83278 1.02685 1.16011 0.79680 0.85046 0.79549 1.90943 1.62263 1.14893 1.76726 1.44468 1.52230 1.17282 1.23435 1.20870 0.88059 0.96612 0.98338 1.19788 0.76110 0.84452 0.77400 1.93361 1.90768 1.63370 1.65607 1.93136 1.64640 1.87874 1.70976 1.93162 1.54732 1.89747 1.78883 1.23475 0.97297 0.98839 0.98725 1.23475 0.92221 1.01960 1.00226 0.93517 0.91616 0.95489 0.92227 0.93844 0.93361 0.89647 0.76006 0.86646 0.86565 0.86924 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.95 37.16 0.33 -3.21 16 2 C 0.25 6.10 2.22 -69.08 -0.15 5.94 16 3 H 0.06 1.53 5.56 -51.93 -0.29 1.24 16 4 C -0.61 -16.72 8.35 -34.44 -0.29 -17.01 16 5 H 0.06 1.77 7.39 -52.49 -0.39 1.38 16 6 C 0.04 1.14 5.29 -17.82 -0.09 1.04 16 7 N -0.90 -26.94 13.70 55.43 0.76 -26.18 16 8 Si 1.03 25.44 26.32 -169.99 -4.47 20.97 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.19 5.73 56.52 0.32 -5.86 16 12 N -0.60 -12.51 2.75 -181.01 -0.50 -13.00 16 13 C 0.09 1.39 9.06 59.85 0.54 1.93 16 14 C 0.70 14.23 8.13 -86.92 -0.71 13.52 16 15 O -0.57 -13.83 13.02 5.29 0.07 -13.76 16 16 N -0.72 -10.84 5.30 -52.42 -0.28 -11.12 16 17 C 0.05 0.72 1.95 -131.82 -0.26 0.46 16 18 C 0.48 7.18 3.19 37.15 0.12 7.29 16 19 F -0.15 -2.84 14.45 2.25 0.03 -2.81 16 20 F -0.18 -2.41 15.89 2.25 0.04 -2.37 16 21 F -0.18 -2.73 17.32 2.25 0.04 -2.69 16 22 C -0.15 -1.28 9.89 -26.69 -0.26 -1.54 16 23 C -0.14 -1.62 9.90 -26.70 -0.26 -1.88 16 24 H 0.05 0.96 7.51 -51.93 -0.39 0.57 16 25 H 0.07 1.49 4.86 -51.93 -0.25 1.24 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.62 6.42 -51.93 -0.33 0.28 16 30 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 31 H 0.40 4.88 6.61 -40.82 -0.27 4.61 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.83 7.72 -51.93 -0.40 0.43 16 34 H 0.11 1.20 7.84 -51.93 -0.41 0.79 16 35 H 0.12 1.42 8.14 -51.92 -0.42 1.00 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -32.96 297.73 -4.87 -37.83 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.01 Total: 2.10 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.03 Total: 6.55 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.02 Total: -50.31 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.07 Total: -13.76 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.11 Total: -7.87 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.47 Total: 20.97 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.96 -4.87 -37.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333848375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.763 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds