Wall clock time and date at job start Tue Mar 31 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46714 * 2 1 4 4 C 1.50694 * 109.47297 * 120.00424 * 2 1 3 5 5 H 1.07997 * 120.00340 * 114.71989 * 4 2 1 6 6 C 1.37882 * 119.99762 * 294.72261 * 4 2 1 7 7 N 1.31516 * 119.99965 * 161.68936 * 6 4 2 8 8 Si 1.86799 * 120.00051 * 341.96862 * 6 4 2 9 9 H 1.48497 * 109.46892 * 179.72569 * 8 6 4 10 10 H 1.48495 * 109.46810 * 299.72162 * 8 6 4 11 11 H 1.48495 * 109.47259 * 59.72452 * 8 6 4 12 12 N 1.46499 * 109.46867 * 240.00468 * 2 1 3 13 13 C 1.46503 * 120.00041 * 299.99535 * 12 2 1 14 14 C 1.34771 * 120.00278 * 119.99843 * 12 2 1 15 15 O 1.21592 * 119.99914 * 0.02562 * 14 12 2 16 16 N 1.34776 * 120.00186 * 179.97438 * 14 12 2 17 17 C 1.46510 * 120.00015 * 183.51745 * 16 14 12 18 18 C 1.52993 * 115.54853 * 293.16061 * 17 16 14 19 19 F 1.39903 * 109.47242 * 62.09449 * 18 17 16 20 20 F 1.39899 * 109.47234 * 182.09784 * 18 17 16 21 21 F 1.39908 * 109.47334 * 302.09492 * 18 17 16 22 22 C 1.53000 * 117.49526 * 147.49067 * 17 16 14 23 23 C 1.52994 * 117.49751 * 78.82994 * 17 16 14 24 24 H 1.08999 * 109.47426 * 174.96473 * 1 2 3 25 25 H 1.09001 * 109.47106 * 294.96058 * 1 2 3 26 26 H 1.09001 * 109.47557 * 54.96638 * 1 2 3 27 27 H 0.97005 * 119.99703 * 355.20114 * 7 6 4 28 28 H 1.09000 * 109.47150 * 90.00220 * 13 12 2 29 29 H 1.08999 * 109.47201 * 210.00210 * 13 12 2 30 30 H 1.08999 * 109.46987 * 330.00639 * 13 12 2 31 31 H 0.96995 * 120.00146 * 3.52260 * 16 14 12 32 32 H 1.08993 * 117.50044 * 359.97438 * 22 17 16 33 33 H 1.08999 * 117.49355 * 145.02396 * 22 17 16 34 34 H 1.09001 * 117.50326 * 214.98198 * 23 17 16 35 35 H 1.09009 * 117.49914 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5811 -1.6356 1.1335 6 6 1.7913 -0.1794 2.4798 7 7 1.8953 -0.9390 3.5483 8 14 1.3095 1.6169 2.6540 9 1 1.1013 1.9365 4.0892 10 1 2.3916 2.4748 2.1079 11 1 0.0528 1.8674 1.9037 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0872 1.1284 -1.8907 16 7 3.2427 -0.6710 -3.1836 17 6 4.1474 0.0167 -4.1084 18 6 3.5417 1.1991 -4.8671 19 9 3.1473 2.1850 -3.9561 20 9 4.4949 1.7285 -5.7435 21 9 2.4287 0.7652 -5.5954 22 6 5.1897 -0.8323 -4.8390 23 6 5.6226 0.1113 -3.7140 24 1 -0.3634 -1.0237 -0.0902 25 1 -0.3633 0.4337 0.9317 26 1 -0.3634 0.5899 -0.8415 27 1 2.0729 -1.8879 3.4534 28 1 0.7375 -2.1443 -1.9994 29 1 2.4629 -2.5818 -1.9865 30 1 1.5295 -2.5968 -0.4710 31 1 2.9673 -1.5835 -3.3633 32 1 5.2027 -1.9021 -4.6313 33 1 5.4443 -0.5479 -5.8600 34 1 6.1618 1.0159 -3.9953 35 1 5.9200 -0.3377 -2.7662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333848375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:50 Heat of formation + Delta-G solvation = -163.568913 kcal Electronic energy + Delta-G solvation = -23455.857962 eV Core-core repulsion = 19460.719516 eV Total energy + Delta-G solvation = -3995.138446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.07441 -48.66293 -48.49508 -41.33075 -38.81590 -37.07077 -35.08255 -33.85074 -31.51726 -27.96011 -27.68514 -26.79481 -24.05594 -23.57975 -21.94321 -20.81768 -19.66486 -19.53901 -19.29689 -18.97235 -18.83313 -17.12586 -16.47154 -16.41051 -15.67886 -15.47873 -15.40023 -15.11719 -15.01596 -14.98230 -14.74182 -14.68693 -14.59782 -14.20610 -13.80392 -13.59726 -13.31771 -13.19518 -13.06032 -12.59820 -12.43740 -12.18468 -11.91381 -11.82485 -11.63505 -11.16504 -11.04151 -10.50943 -10.36571 -9.46659 -8.69514 -6.37829 1.37639 1.43903 1.51384 1.67098 1.72229 2.11064 2.27510 2.43748 2.72892 2.89093 3.01600 3.10049 3.34892 3.66909 3.77342 4.20940 4.30132 4.49275 4.56620 4.56974 4.71215 4.76919 4.82005 4.88155 5.00522 5.12675 5.25352 5.31909 5.65843 5.79129 6.00633 6.09989 6.59038 7.01123 7.32637 7.59927 8.62096 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.005415 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.749675 B = 5169.687276 C = 5374.218169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.251 3.749 3 H 0.030 0.970 4 C -0.603 4.603 5 H 0.035 0.965 6 C -0.004 4.004 7 N -0.929 5.929 8 Si 1.065 2.935 9 H -0.282 1.282 10 H -0.284 1.284 11 H -0.241 1.241 12 N -0.612 5.612 13 C 0.083 3.917 14 C 0.690 3.310 15 O -0.616 6.616 16 N -0.696 5.696 17 C 0.017 3.983 18 C 0.474 3.526 19 F -0.180 7.180 20 F -0.173 7.173 21 F -0.184 7.184 22 C -0.096 4.096 23 C -0.152 4.152 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.258 0.742 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.418 0.582 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -2.718 -20.389 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.147 3.853 3 H 0.048 0.952 4 C -0.642 4.642 5 H 0.054 0.946 6 C -0.204 4.204 7 N -0.565 5.565 8 Si 0.888 3.112 9 H -0.208 1.208 10 H -0.210 1.210 11 H -0.165 1.165 12 N -0.346 5.346 13 C -0.059 4.059 14 C 0.392 3.608 15 O -0.495 6.495 16 N -0.355 5.355 17 C -0.074 4.074 18 C 0.418 3.582 19 F -0.161 7.161 20 F -0.155 7.155 21 F -0.166 7.166 22 C -0.133 4.133 23 C -0.190 4.190 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.259 0.741 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.864 -0.731 -19.105 19.505 hybrid contribution 0.082 -1.501 -0.705 1.660 sum 3.946 -2.232 -19.809 20.322 Atomic orbital electron populations 1.22359 0.96668 1.01464 1.00550 1.18811 0.91596 0.93073 0.81785 0.95207 1.22302 1.39278 1.10172 0.92424 0.94629 1.26715 0.93791 1.08109 0.91819 1.70963 1.46687 1.06900 1.31901 0.83809 0.78716 0.72115 0.76511 1.20779 1.20988 1.16534 1.47154 1.51937 1.13093 1.22436 1.21741 1.01000 0.80738 1.02436 1.16213 0.79380 0.84697 0.80544 1.90912 1.63675 1.16971 1.77959 1.44156 1.51705 1.17681 1.21968 1.21203 0.88353 0.98029 0.99845 1.20047 0.76301 0.84434 0.77374 1.93301 1.91177 1.64811 1.66835 1.93149 1.64027 1.87823 1.70496 1.93154 1.54975 1.89631 1.78834 1.23748 0.91261 0.99544 0.98768 1.23544 0.90633 1.03452 1.01361 0.92200 0.92461 0.93808 0.93333 0.91224 0.89757 0.91851 0.74091 0.83869 0.84151 0.86491 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.47 8.95 71.98 0.64 -5.82 16 2 C 0.25 12.19 2.22 44.24 0.10 12.29 16 3 H 0.03 1.63 5.56 -2.39 -0.01 1.61 16 4 C -0.60 -33.50 8.35 25.60 0.21 -33.28 16 5 H 0.04 2.11 7.39 -2.91 -0.02 2.09 16 6 C 0.00 -0.22 5.29 84.66 0.45 0.23 16 7 N -0.93 -56.78 13.70 21.45 0.29 -56.49 16 8 Si 1.07 51.59 26.32 68.60 1.81 53.39 16 9 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 10 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.24 -10.37 5.73 99.48 0.57 -9.80 16 12 N -0.61 -24.91 2.75 -844.85 -2.33 -27.23 16 13 C 0.08 2.52 9.06 127.77 1.16 3.68 16 14 C 0.69 27.64 8.13 179.06 1.46 29.09 16 15 O -0.62 -30.01 13.02 -4.00 -0.05 -30.07 16 16 N -0.70 -19.53 5.30 -438.01 -2.32 -21.85 16 17 C 0.02 0.43 1.95 3.60 0.01 0.43 16 18 C 0.47 13.52 3.19 71.98 0.23 13.75 16 19 F -0.18 -6.85 14.45 44.97 0.65 -6.20 16 20 F -0.17 -4.18 15.89 44.97 0.71 -3.46 16 21 F -0.18 -5.15 17.32 44.97 0.78 -4.37 16 22 C -0.10 -1.27 9.89 30.62 0.30 -0.96 16 23 C -0.15 -3.16 9.90 30.62 0.30 -2.86 16 24 H 0.06 2.35 7.51 -2.39 -0.02 2.33 16 25 H 0.06 2.51 4.86 -2.39 -0.01 2.49 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.26 15.73 8.73 -92.70 -0.81 14.92 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.89 6.42 -2.39 -0.02 1.88 16 30 H 0.06 2.21 6.92 -2.39 -0.02 2.20 16 31 H 0.42 8.68 6.61 -92.71 -0.61 8.07 16 32 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.14 1.26 7.72 -2.39 -0.02 1.25 16 34 H 0.12 2.29 7.84 -2.39 -0.02 2.27 16 35 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -74.15 297.73 4.76 -69.39 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.35 Total: 10.33 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 4.86 Total: 16.55 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.35 Total: -105.57 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.07 kcal Atomic # 9 Polarization: -16.17 SS G_CDS: 2.14 Total: -14.02 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.81 Total: 53.39 kcal Total: -74.15 4.76 -69.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333848375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.175 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds