Wall clock time and date at job start Tue Mar 31 2020 01:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47723 * 2 1 4 4 C 1.50706 * 109.47400 * 240.00020 * 2 1 3 5 5 H 1.08003 * 119.99874 * 240.00214 * 4 2 1 6 6 C 1.37872 * 120.00069 * 59.99530 * 4 2 1 7 7 N 1.31513 * 120.00130 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99976 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46853 * 90.00355 * 8 6 4 10 10 H 1.48498 * 109.47064 * 210.00379 * 8 6 4 11 11 H 1.48502 * 109.47269 * 330.00434 * 8 6 4 12 12 N 1.46501 * 109.47209 * 119.99696 * 2 1 3 13 13 C 1.46501 * 119.99681 * 60.00220 * 12 2 1 14 14 C 1.34781 * 120.00201 * 239.99857 * 12 2 1 15 15 O 1.21497 * 119.99915 * 354.48822 * 14 12 2 16 16 C 1.48329 * 119.99863 * 174.75991 * 14 12 2 17 17 N 1.31599 * 127.15748 * 354.42207 * 16 14 12 18 18 O 1.21563 * 111.54828 * 179.97438 * 17 16 14 19 19 C 1.32811 * 111.51958 * 359.96088 * 18 17 16 20 20 C 1.35716 * 106.70077 * 359.80600 * 19 18 17 21 21 C 1.50040 * 123.86149 * 179.42275 * 20 19 18 22 22 O 1.43615 * 107.88612 * 345.87441 * 21 20 19 23 23 C 1.42993 * 114.38072 * 49.77187 * 22 21 20 24 24 C 1.50665 * 130.83404 * 180.18815 * 19 18 17 25 25 H 1.09007 * 109.46817 * 59.99802 * 1 2 3 26 26 H 1.08994 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47337 * 300.00384 * 1 2 3 28 28 H 0.96996 * 120.00218 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46509 * 265.26551 * 13 12 2 30 30 H 1.08995 * 109.47180 * 25.26429 * 13 12 2 31 31 H 1.08996 * 109.47187 * 145.27126 * 13 12 2 32 32 H 1.09003 * 109.95589 * 226.16076 * 21 20 19 33 33 H 1.09000 * 109.60661 * 105.38932 * 21 20 19 34 34 H 1.08999 * 109.39917 * 169.44668 * 23 22 21 35 35 H 1.09004 * 109.32673 * 49.66677 * 23 22 21 36 36 H 1.09005 * 109.81922 * 283.58169 * 24 19 18 37 37 H 1.09002 * 109.81977 * 44.50248 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7585 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0834 15 8 3.1695 1.0945 1.8432 16 6 3.1915 -0.6965 3.3501 17 7 2.7905 -1.8679 3.7957 18 8 3.2969 -2.1350 4.8681 19 6 4.1086 -1.1670 5.2780 20 6 4.0815 -0.2042 4.3219 21 6 4.8576 1.0773 4.4036 22 8 5.3205 1.2272 5.7548 23 6 5.9748 0.0720 6.2862 24 6 4.9494 -1.0474 6.5225 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7094 1.1616 -3.4844 29 1 0.7848 -2.1445 2.0698 30 1 1.4474 -2.5754 0.4750 31 1 2.4975 -2.6029 1.9119 32 1 4.2168 1.9179 4.1377 33 1 5.7091 1.0331 3.7245 34 1 6.4537 0.3297 7.2309 35 1 6.7300 -0.2720 5.5794 36 1 4.3164 -0.7953 7.3734 37 1 5.4662 -1.9884 6.7113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334857592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:04 Heat of formation + Delta-G solvation = -3.538228 kcal Electronic energy + Delta-G solvation = -22374.796654 eV Core-core repulsion = 18928.454399 eV Total energy + Delta-G solvation = -3446.342255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.05598 -39.15850 -38.91524 -35.49586 -34.05248 -33.35612 -32.74200 -30.75132 -29.35414 -26.68761 -26.12043 -25.27772 -24.32813 -24.06856 -21.19477 -20.56204 -18.71529 -17.85311 -17.40744 -16.72387 -16.34888 -16.11690 -15.47184 -15.37830 -15.00885 -14.46909 -14.35323 -13.81491 -13.72028 -13.02375 -12.96554 -12.61621 -12.43527 -11.97365 -11.82508 -11.64587 -11.33476 -11.16111 -10.97436 -10.87242 -10.72902 -10.36243 -10.27964 -10.21013 -9.95892 -9.45391 -9.21278 -9.17252 -8.47766 -7.71257 -6.11318 -4.19547 1.22076 1.69853 2.77685 3.24944 3.31782 3.34554 3.50952 3.56565 3.66438 4.20277 4.32555 4.39371 4.59080 4.70950 4.83968 4.97525 5.17184 5.20246 5.24295 5.39098 5.43804 5.53246 5.69328 5.91211 5.98638 6.12497 6.44327 6.70664 6.78616 6.83588 6.99275 7.30288 7.43041 7.65702 7.92535 8.05716 8.11972 8.38030 8.70180 8.88431 9.46627 10.94232 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.004383 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.862726 B = 6386.607898 C = 6623.776788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.571 5.571 13 C 0.085 3.915 14 C 0.578 3.422 15 O -0.534 6.534 16 C 0.011 3.989 17 N -0.331 5.331 18 O 0.120 5.880 19 C -0.040 4.040 20 C -0.202 4.202 21 C 0.141 3.859 22 O -0.376 6.376 23 C 0.060 3.940 24 C -0.066 4.066 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.012 0.988 28 H 0.264 0.736 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.346 -4.832 17.277 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.301 5.301 13 C -0.059 4.059 14 C 0.362 3.638 15 O -0.411 6.411 16 C -0.147 4.147 17 N -0.037 5.037 18 O 0.052 5.948 19 C -0.105 4.105 20 C -0.207 4.207 21 C 0.064 3.936 22 O -0.294 6.294 23 C -0.017 4.017 24 C -0.104 4.104 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.559 -4.848 16.536 18.438 hybrid contribution 0.553 -0.389 -0.945 1.162 sum 7.112 -5.236 15.591 17.918 Atomic orbital electron populations 1.22099 0.97740 0.99691 1.00969 1.19089 0.91107 0.94527 0.79491 0.91619 1.21281 1.32078 1.13125 0.90128 0.92161 1.24882 0.94860 0.94945 0.98967 1.69872 1.36231 1.22480 1.23894 0.86458 0.79210 0.79296 0.82231 1.20542 1.21008 1.19919 1.48221 1.47055 1.12079 1.22718 1.21779 0.99849 0.82291 1.01987 1.16951 0.80209 0.85507 0.81117 1.90737 1.55635 1.18222 1.76486 1.23284 0.99341 0.92716 0.99398 1.74908 1.17031 1.16035 0.95755 1.84653 1.43812 1.39028 1.27339 1.23918 0.97857 0.89088 0.99610 1.21354 1.03283 1.00976 0.95059 1.20995 0.96523 0.93258 0.82797 1.88119 1.76314 1.36047 1.28965 1.22715 0.93086 0.85512 1.00383 1.20996 0.96288 1.01511 0.91649 0.88528 0.94950 0.96925 0.92576 0.93503 0.89854 0.91839 0.85843 0.90459 0.87122 0.92147 0.87955 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.15 0.33 -3.24 16 2 C 0.26 6.71 2.63 -69.08 -0.18 6.53 16 3 H 0.07 1.94 6.91 -51.93 -0.36 1.58 16 4 C -0.53 -14.43 7.96 -34.44 -0.27 -14.70 16 5 H 0.06 1.63 7.41 -52.48 -0.39 1.25 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.57 -13.06 2.75 -176.19 -0.49 -13.55 16 13 C 0.08 1.64 8.32 59.85 0.50 2.14 16 14 C 0.58 12.93 7.69 -12.11 -0.09 12.84 16 15 O -0.53 -13.18 15.59 5.37 0.08 -13.09 16 16 C 0.01 0.20 6.78 -82.90 -0.56 -0.36 16 17 N -0.33 -5.59 9.00 33.26 0.30 -5.29 16 18 O 0.12 1.70 11.17 20.05 0.22 1.92 16 19 C -0.04 -0.50 7.50 -35.23 -0.26 -0.76 16 20 C -0.20 -3.11 6.15 -104.93 -0.65 -3.75 16 21 C 0.14 1.95 6.70 35.69 0.24 2.19 16 22 O -0.38 -4.48 10.76 -35.23 -0.38 -4.86 16 23 C 0.06 0.47 6.77 37.49 0.25 0.73 16 24 C -0.07 -0.50 6.56 -27.57 -0.18 -0.68 16 25 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 26 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.64 7.09 -51.93 -0.37 1.27 16 31 H 0.06 1.15 5.90 -51.93 -0.31 0.85 16 32 H 0.12 1.85 7.93 -51.93 -0.41 1.44 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -31.54 307.03 -5.63 -37.18 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.64 Total: -1.25 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.97 Total: 2.64 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.44 Total: -43.25 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.07 Total: -16.03 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.54 -5.63 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334857592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.641 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds