Wall clock time and date at job start Tue Mar 31 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46894 * 111.00072 * 275.00214 * 12 2 1 14 14 C 1.52994 * 109.47435 * 179.97438 * 13 12 2 15 15 H 1.09007 * 109.47263 * 305.00543 * 14 13 12 16 16 O 1.42906 * 109.47195 * 64.99977 * 14 13 12 17 17 C 1.50692 * 109.47655 * 184.99793 * 14 13 12 18 18 C 1.38239 * 120.00377 * 279.72842 * 17 14 13 19 19 C 1.38239 * 120.00168 * 179.78381 * 18 17 14 20 20 C 1.38239 * 119.99579 * 0.46549 * 19 18 17 21 21 N 1.48021 * 119.99545 * 179.78993 * 20 19 18 22 22 O 1.21802 * 119.99932 * 179.97438 * 21 20 19 23 23 O 1.21802 * 119.99854 * 359.97438 * 21 20 19 24 24 C 1.38232 * 120.00059 * 359.76753 * 20 19 18 25 25 C 1.38224 * 120.00510 * 0.02562 * 24 20 19 26 26 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 27 27 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 28 28 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 30 30 H 1.00901 * 110.99872 * 151.04898 * 12 2 1 31 31 H 1.08998 * 109.47278 * 299.99867 * 13 12 2 32 32 H 1.09000 * 109.47351 * 59.99975 * 13 12 2 33 33 H 0.96704 * 113.99859 * 59.99579 * 16 14 13 34 34 H 1.08000 * 119.99467 * 359.97438 * 18 17 14 35 35 H 1.07994 * 119.99996 * 180.25775 * 19 18 17 36 36 H 1.08006 * 119.99540 * 180.02562 * 24 20 19 37 37 H 1.08001 * 120.00742 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5951 -0.5331 3.5745 15 1 1.9692 -1.4081 3.7500 16 8 3.9433 -0.9495 3.3488 17 6 2.5436 0.3712 4.7788 18 6 3.5423 1.3043 4.9857 19 6 3.4927 2.1369 6.0882 20 6 2.4494 2.0298 6.9888 21 7 2.3988 2.9181 8.1717 22 8 1.4793 2.8241 8.9650 23 8 3.2766 3.7431 8.3517 24 6 1.4533 1.0934 6.7844 25 6 1.5006 0.2638 5.6798 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7081 1.1608 -3.4844 30 1 2.9173 -1.1204 1.0287 31 1 2.7588 1.0462 2.1182 32 1 1.0871 0.6162 2.5526 33 1 4.5578 -0.2209 3.1850 34 1 4.3596 1.3850 4.2844 35 1 4.2707 2.8687 6.2476 36 1 0.6380 1.0100 7.4879 37 1 0.7226 -0.4681 5.5203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336699029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:55 Heat of formation + Delta-G solvation = -32.104692 kcal Electronic energy + Delta-G solvation = -21069.152260 eV Core-core repulsion = 17621.571270 eV Total energy + Delta-G solvation = -3447.580990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.37924 -40.20511 -37.61007 -36.76507 -35.48218 -32.89541 -32.32839 -31.73491 -29.58652 -27.62902 -25.70981 -25.07119 -23.59784 -22.82851 -21.38466 -19.94696 -19.62842 -18.86604 -17.72785 -17.51509 -16.78257 -16.24163 -15.54401 -15.17832 -14.83182 -14.65715 -14.21298 -13.86765 -13.74453 -13.44749 -13.12471 -12.62879 -12.06951 -11.83639 -11.73441 -11.62043 -11.42969 -11.34411 -11.22795 -11.05296 -10.79263 -10.55425 -10.35811 -10.24069 -10.04205 -9.74498 -9.56131 -8.92857 -8.57992 -7.47654 -6.12561 -4.19513 -0.42755 0.61389 1.08488 1.18218 2.92227 3.22447 3.30843 3.34898 4.01058 4.04566 4.15014 4.23075 4.33648 4.57881 4.60492 4.89829 5.01844 5.18174 5.19400 5.28665 5.37385 5.40677 5.55605 5.74275 5.91009 5.95258 6.11487 6.21889 6.73098 6.99268 7.08595 7.33943 7.42331 7.42756 7.68151 7.76445 8.15312 8.22765 8.52237 8.90536 9.47228 10.93804 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.003004 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.948850 B = 9318.532191 C = 9468.485726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.683 5.683 13 C 0.036 3.964 14 C 0.140 3.860 15 H 0.124 0.876 16 O -0.546 6.546 17 C -0.052 4.052 18 C -0.112 4.112 19 C -0.050 4.050 20 C -0.052 4.052 21 N 0.031 4.969 22 O -0.164 6.164 23 O -0.164 6.164 24 C -0.051 4.051 25 C -0.107 4.107 26 H 0.002 0.998 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.339 0.661 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.372 0.628 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 0.986 16.303 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.316 5.316 13 C -0.094 4.094 14 C 0.080 3.920 15 H 0.142 0.858 16 O -0.351 6.351 17 C -0.053 4.053 18 C -0.131 4.131 19 C -0.069 4.069 20 C -0.135 4.135 21 N 0.549 4.451 22 O -0.379 6.379 23 O -0.379 6.379 24 C -0.070 4.070 25 C -0.126 4.126 26 H 0.022 0.978 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.604 -0.156 15.836 16.049 hybrid contribution 1.153 1.082 -0.834 1.788 sum 3.757 0.926 15.002 15.493 Atomic orbital electron populations 1.21732 0.97830 0.99460 0.99375 1.19128 0.92651 0.92269 0.85504 0.98225 1.21284 1.31597 1.12630 0.90334 0.92030 1.24929 0.94971 0.94973 0.99151 1.69901 1.36534 1.22911 1.23512 0.86446 0.78657 0.79632 0.82716 1.19669 1.20906 1.21064 1.60696 1.32852 1.32312 1.05719 1.22541 1.00750 0.94337 0.91819 1.21213 0.84611 0.96629 0.89498 0.85795 1.86696 1.17871 1.37066 1.93516 1.21313 0.93189 0.94608 0.96200 1.20985 0.99882 0.94920 0.97321 1.21017 0.96012 0.98122 0.91759 1.21129 1.02372 0.99150 0.90863 1.43643 0.99553 1.00204 1.01671 1.94535 1.27194 1.75393 1.40793 1.94537 1.32234 1.30463 1.80715 1.21070 0.96627 0.91564 0.97785 1.21136 0.99070 0.99657 0.92726 0.97847 0.89996 0.94812 0.92888 0.84292 0.95673 0.90675 0.78071 0.83648 0.82880 0.82819 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.19 37.15 0.34 -2.64 16 2 C 0.21 5.07 2.60 -68.86 -0.18 4.90 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.40 16 4 C -0.52 -13.74 8.59 -34.44 -0.30 -14.03 16 5 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.68 -13.27 6.30 -107.96 -0.68 -13.95 16 13 C 0.04 0.54 5.13 -3.83 -0.02 0.52 16 14 C 0.14 1.61 3.45 -27.89 -0.10 1.51 16 15 H 0.12 1.45 8.00 -51.93 -0.42 1.03 16 16 O -0.55 -6.39 12.71 -35.23 -0.45 -6.84 16 17 C -0.05 -0.50 4.97 -104.62 -0.52 -1.02 16 18 C -0.11 -0.97 9.32 -39.58 -0.37 -1.34 16 19 C -0.05 -0.46 9.56 -39.58 -0.38 -0.84 16 20 C -0.05 -0.56 6.85 -79.95 -0.55 -1.10 16 21 N 0.03 0.39 4.45 33.96 0.15 0.54 16 22 O -0.16 -2.17 18.45 -29.46 -0.54 -2.71 16 23 O -0.16 -2.18 18.45 -29.46 -0.54 -2.72 16 24 C -0.05 -0.47 9.55 -39.59 -0.38 -0.85 16 25 C -0.11 -0.93 9.67 -39.58 -0.38 -1.32 16 26 H 0.00 0.05 7.45 -51.93 -0.39 -0.33 16 27 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.34 6.57 7.78 -39.29 -0.31 6.27 16 31 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.07 1.16 7.44 -51.93 -0.39 0.78 16 33 H 0.37 3.13 7.50 45.56 0.34 3.47 16 34 H 0.15 0.93 6.78 -52.49 -0.36 0.57 16 35 H 0.15 1.19 7.61 -52.49 -0.40 0.79 16 36 H 0.15 1.18 7.61 -52.48 -0.40 0.78 16 37 H 0.15 1.02 8.04 -52.49 -0.42 0.60 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -30.09 320.94 -8.37 -38.46 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.82 Total: 5.48 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.92 Total: -14.66 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.10 Total: -37.50 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.53 Total: -12.27 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.09 -8.37 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336699029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.356 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds