Wall clock time and date at job start Tue Mar 31 2020 01:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46894 * 111.00072 * 275.00214 * 12 2 1 14 14 C 1.52994 * 109.47435 * 179.97438 * 13 12 2 15 15 H 1.09007 * 109.47263 * 305.00543 * 14 13 12 16 16 O 1.42906 * 109.47195 * 64.99977 * 14 13 12 17 17 C 1.50692 * 109.47655 * 184.99793 * 14 13 12 18 18 C 1.38239 * 120.00377 * 279.72842 * 17 14 13 19 19 C 1.38239 * 120.00168 * 179.78381 * 18 17 14 20 20 C 1.38239 * 119.99579 * 0.46549 * 19 18 17 21 21 N 1.48021 * 119.99545 * 179.78993 * 20 19 18 22 22 O 1.21802 * 119.99932 * 179.97438 * 21 20 19 23 23 O 1.21802 * 119.99854 * 359.97438 * 21 20 19 24 24 C 1.38232 * 120.00059 * 359.76753 * 20 19 18 25 25 C 1.38224 * 120.00510 * 0.02562 * 24 20 19 26 26 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 27 27 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 28 28 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 30 30 H 1.00901 * 110.99872 * 151.04898 * 12 2 1 31 31 H 1.08998 * 109.47278 * 299.99867 * 13 12 2 32 32 H 1.09000 * 109.47351 * 59.99975 * 13 12 2 33 33 H 0.96704 * 113.99859 * 59.99579 * 16 14 13 34 34 H 1.08000 * 119.99467 * 359.97438 * 18 17 14 35 35 H 1.07994 * 119.99996 * 180.25775 * 19 18 17 36 36 H 1.08006 * 119.99540 * 180.02562 * 24 20 19 37 37 H 1.08001 * 120.00742 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5951 -0.5331 3.5745 15 1 1.9692 -1.4081 3.7500 16 8 3.9433 -0.9495 3.3488 17 6 2.5436 0.3712 4.7788 18 6 3.5423 1.3043 4.9857 19 6 3.4927 2.1369 6.0882 20 6 2.4494 2.0298 6.9888 21 7 2.3988 2.9181 8.1717 22 8 1.4793 2.8241 8.9650 23 8 3.2766 3.7431 8.3517 24 6 1.4533 1.0934 6.7844 25 6 1.5006 0.2638 5.6798 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7081 1.1608 -3.4844 30 1 2.9173 -1.1204 1.0287 31 1 2.7588 1.0462 2.1182 32 1 1.0871 0.6162 2.5526 33 1 4.5578 -0.2209 3.1850 34 1 4.3596 1.3850 4.2844 35 1 4.2707 2.8687 6.2476 36 1 0.6380 1.0100 7.4879 37 1 0.7226 -0.4681 5.5203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336699029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:54 Heat of formation + Delta-G solvation = -52.176414 kcal Electronic energy + Delta-G solvation = -21070.022635 eV Core-core repulsion = 17621.571270 eV Total energy + Delta-G solvation = -3448.451365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.29842 -41.00868 -38.65813 -37.72951 -37.03856 -34.43812 -33.44988 -32.43408 -31.09906 -28.86562 -27.38991 -26.50146 -24.35908 -23.86862 -22.31261 -21.75483 -20.44928 -19.80486 -18.72571 -18.65331 -18.29216 -17.17881 -16.95926 -16.31054 -15.98597 -15.76720 -15.36683 -15.05282 -14.73451 -14.48524 -14.43495 -13.96024 -13.43418 -13.26435 -12.87320 -12.80132 -12.69272 -12.53763 -12.39935 -12.35116 -12.30952 -12.21063 -12.16951 -12.03550 -11.21686 -10.88755 -10.59555 -10.43173 -10.41289 -9.08799 -8.15071 -6.28883 -1.31170 -0.06161 0.21041 0.32868 1.40838 1.43756 1.54752 2.18433 2.40819 3.11760 3.15666 3.33279 3.39678 3.47782 3.77213 3.88562 3.94167 4.09437 4.24604 4.26120 4.62192 4.65551 4.70211 4.73550 4.82204 4.87056 5.05878 5.10450 5.21092 5.22740 5.42112 5.45681 5.65885 5.85169 6.22106 6.43273 6.44024 6.66682 6.76742 6.99525 7.42146 8.90495 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.003004 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.948850 B = 9318.532191 C = 9468.485726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.216 3.784 3 H -0.029 1.029 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.683 5.683 13 C 0.036 3.964 14 C 0.158 3.842 15 H 0.125 0.875 16 O -0.558 6.558 17 C -0.056 4.056 18 C -0.109 4.109 19 C -0.052 4.052 20 C -0.066 4.066 21 N 0.031 4.969 22 O -0.179 6.179 23 O -0.182 6.182 24 C -0.052 4.052 25 C -0.103 4.103 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.339 0.661 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.386 0.614 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 0.102 16.523 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 H -0.011 1.011 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.314 5.314 13 C -0.094 4.094 14 C 0.098 3.902 15 H 0.143 0.857 16 O -0.365 6.365 17 C -0.057 4.057 18 C -0.127 4.127 19 C -0.070 4.070 20 C -0.149 4.149 21 N 0.546 4.454 22 O -0.393 6.393 23 O -0.395 6.395 24 C -0.071 4.071 25 C -0.121 4.121 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.186 0.814 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.195 -1.026 16.091 16.438 hybrid contribution 0.988 1.355 -0.887 1.897 sum 4.184 0.329 15.205 15.773 Atomic orbital electron populations 1.21562 0.97800 0.98961 0.99086 1.18907 0.92671 0.90779 0.86875 1.01141 1.21633 1.31563 1.12672 0.91622 0.92223 1.25709 0.95184 0.95655 1.02034 1.70023 1.37488 1.24115 1.24112 0.85470 0.78100 0.78663 0.79172 1.18993 1.20764 1.20709 1.60558 1.32889 1.32828 1.05147 1.22610 1.00955 0.94143 0.91677 1.20893 0.84533 0.96379 0.88383 0.85718 1.86673 1.18054 1.38257 1.93505 1.21193 0.94029 0.94700 0.95826 1.21237 1.00169 0.94020 0.97275 1.21209 0.95931 0.98421 0.91489 1.21376 1.03648 0.99469 0.90444 1.43943 0.99156 1.00227 1.02086 1.94518 1.27424 1.75718 1.41627 1.94521 1.32475 1.31278 1.81217 1.21267 0.96608 0.91051 0.98140 1.21373 0.99149 0.99598 0.91993 0.95724 0.92676 0.95224 0.92872 0.84294 0.95494 0.91031 0.76410 0.81397 0.81710 0.81532 0.80946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 9.19 71.98 0.66 -4.82 16 2 C 0.22 10.34 2.60 44.17 0.11 10.46 16 3 H -0.03 -1.53 7.80 -2.38 -0.02 -1.55 16 4 C -0.54 -28.28 8.59 25.60 0.22 -28.06 16 5 H 0.06 3.09 7.62 -2.91 -0.02 3.07 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -51.39 11.32 21.45 0.24 -51.15 16 8 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.68 -25.77 6.30 -495.47 -3.12 -28.89 16 13 C 0.04 1.03 5.13 86.30 0.44 1.47 16 14 C 0.16 3.24 3.45 29.84 0.10 3.34 16 15 H 0.13 2.58 8.00 -2.38 -0.02 2.57 16 16 O -0.56 -11.64 12.71 -148.98 -1.89 -13.53 16 17 C -0.06 -0.93 4.97 -19.87 -0.10 -1.03 16 18 C -0.11 -1.59 9.32 22.27 0.21 -1.38 16 19 C -0.05 -0.85 9.56 22.27 0.21 -0.63 16 20 C -0.07 -1.31 6.85 36.37 0.25 -1.06 16 21 N 0.03 0.77 4.45 -46.46 -0.21 0.56 16 22 O -0.18 -4.67 18.45 18.88 0.35 -4.32 16 23 O -0.18 -4.78 18.45 18.88 0.35 -4.43 16 24 C -0.05 -0.84 9.55 22.26 0.21 -0.63 16 25 C -0.10 -1.52 9.67 22.27 0.22 -1.30 16 26 H 0.02 1.01 7.45 -2.39 -0.02 0.99 16 27 H 0.05 2.91 6.07 -2.39 -0.01 2.89 16 28 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.34 12.77 7.78 -89.69 -0.70 12.07 16 31 H 0.03 0.76 8.06 -2.39 -0.02 0.75 16 32 H 0.07 2.09 7.44 -2.39 -0.02 2.07 16 33 H 0.39 5.44 7.50 -74.05 -0.56 4.89 16 34 H 0.17 1.62 6.78 -2.91 -0.02 1.60 16 35 H 0.17 2.27 7.61 -2.91 -0.02 2.25 16 36 H 0.17 2.23 7.61 -2.91 -0.02 2.21 16 37 H 0.17 1.78 8.04 -2.91 -0.02 1.75 16 Total: -1.00 -64.09 320.94 0.59 -63.50 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.14 Total: 16.56 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 2.99 Total: -22.49 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -3.09 Total: -79.48 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.20 Total: -22.28 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.09 0.59 -63.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336699029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.324 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds