Wall clock time and date at job start Tue Mar 31 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.47282 * 60.00347 * 14 13 12 16 16 O 1.42897 * 109.47270 * 300.00002 * 14 13 12 17 17 C 1.50704 * 109.46831 * 180.02562 * 14 13 12 18 18 C 1.38233 * 120.00375 * 84.72811 * 17 14 13 19 19 C 1.38234 * 120.00400 * 179.78898 * 18 17 14 20 20 C 1.38243 * 119.99525 * 0.45961 * 19 18 17 21 21 N 1.48008 * 119.99799 * 179.79086 * 20 19 18 22 22 O 1.21805 * 120.00444 * 179.97438 * 21 20 19 23 23 O 1.21803 * 120.00416 * 359.97438 * 21 20 19 24 24 C 1.38235 * 120.00091 * 359.77192 * 20 19 18 25 25 C 1.38232 * 119.99842 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 30 30 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 31 31 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 32 32 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 33 33 H 0.96705 * 114.00020 * 300.00248 * 16 14 13 34 34 H 1.08007 * 119.99725 * 359.97438 * 18 17 14 35 35 H 1.07994 * 120.00586 * 180.25040 * 19 18 17 36 36 H 1.07996 * 119.99872 * 180.02562 * 24 20 19 37 37 H 1.08010 * 119.99665 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5952 -0.5332 -3.5744 15 1 1.9185 -1.3566 -3.8029 16 8 3.9000 -1.0498 -3.3051 17 6 2.6602 0.4057 -4.7514 18 6 3.7724 1.2053 -4.9371 19 6 3.8339 2.0634 -6.0192 20 6 2.7790 2.1287 -6.9103 21 7 2.8429 3.0508 -8.0663 22 8 1.9137 3.1081 -8.8517 23 8 3.8246 3.7524 -8.2323 24 6 1.6648 1.3326 -6.7219 25 6 1.6052 0.4715 -5.6421 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.9026 -0.5283 4.4376 30 1 2.9173 -1.1205 -1.0286 31 1 1.0872 0.6163 -2.5525 32 1 2.7589 1.0462 -2.1181 33 1 4.5557 -0.3712 -3.0934 34 1 4.5946 1.1575 -4.2384 35 1 4.7045 2.6851 -6.1666 36 1 0.8409 1.3833 -7.4183 37 1 0.7343 -0.1502 -5.4947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336699030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:57 Heat of formation + Delta-G solvation = -23.022545 kcal Electronic energy + Delta-G solvation = -21151.592686 eV Core-core repulsion = 17704.405528 eV Total energy + Delta-G solvation = -3447.187158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.42900 -40.28075 -37.72860 -36.81181 -35.71404 -32.92316 -32.35809 -31.79010 -30.24916 -28.00208 -25.88032 -25.01874 -23.63209 -22.91705 -21.45475 -20.05944 -19.68598 -18.91462 -17.77629 -17.63890 -16.93153 -16.36289 -15.88577 -15.44605 -14.92123 -14.61158 -14.25747 -14.05202 -13.78236 -13.53739 -13.24581 -12.88257 -12.27698 -12.22401 -11.92496 -11.78178 -11.60361 -11.47327 -11.38984 -11.37745 -10.99869 -10.78897 -10.37260 -10.21180 -9.80832 -9.74610 -9.53809 -9.13953 -8.71287 -7.71659 -6.19736 -4.20651 -0.48527 0.55027 1.02733 1.13007 2.85687 3.18112 3.26698 3.30044 3.93742 3.97058 4.08336 4.14872 4.28403 4.51922 4.53970 4.83564 4.90033 5.06925 5.10923 5.18858 5.26980 5.33620 5.42841 5.61774 5.77263 5.84965 6.00678 6.16074 6.24182 6.39419 6.56637 6.65478 7.23838 7.36122 7.37646 7.44470 7.75029 8.19111 8.47929 8.84789 9.41592 10.93120 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.003278 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.447688 B = 8539.981704 C = 8831.407595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.183 3.817 3 H 0.000 1.000 4 C -0.523 4.523 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.673 5.673 13 C 0.032 3.968 14 C 0.142 3.858 15 H 0.125 0.875 16 O -0.544 6.544 17 C -0.053 4.053 18 C -0.112 4.112 19 C -0.050 4.050 20 C -0.052 4.052 21 N 0.030 4.970 22 O -0.163 6.163 23 O -0.163 6.163 24 C -0.051 4.051 25 C -0.108 4.108 26 H 0.059 0.941 27 H 0.024 0.976 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.348 0.652 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.372 0.628 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 4.717 -19.054 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 H 0.017 0.983 4 C -0.561 4.561 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.306 5.306 13 C -0.099 4.099 14 C 0.082 3.918 15 H 0.143 0.857 16 O -0.349 6.349 17 C -0.055 4.055 18 C -0.131 4.131 19 C -0.069 4.069 20 C -0.135 4.135 21 N 0.549 4.451 22 O -0.379 6.379 23 O -0.379 6.379 24 C -0.070 4.070 25 C -0.127 4.127 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.168 0.832 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.220 0.780 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.247 3.454 -18.567 18.887 hybrid contribution 0.338 2.231 0.249 2.270 sum 0.585 5.685 -18.318 19.189 Atomic orbital electron populations 1.22089 0.98657 1.01150 0.97740 1.19537 0.91797 0.92881 0.88359 0.98262 1.21079 1.32623 1.13937 0.88506 0.90208 1.24934 0.95636 0.96697 0.95748 1.69884 1.45297 1.40152 0.97990 0.86807 0.80767 0.83470 0.76805 1.20410 1.22410 1.19548 1.60457 1.33799 1.31630 1.04682 1.22598 1.00882 0.94420 0.91975 1.21159 0.85945 0.95117 0.89582 0.85698 1.86712 1.19104 1.37379 1.91729 1.21309 0.93323 0.94714 0.96125 1.20985 0.99144 0.95430 0.97540 1.21025 0.97140 0.96962 0.91744 1.21136 1.00511 0.99943 0.91894 1.43641 0.99875 1.00110 1.01484 1.94538 1.29961 1.72877 1.40497 1.94540 1.23248 1.40164 1.79929 1.21073 0.96096 0.92165 0.97704 1.21120 0.99562 0.98929 0.93064 0.92172 0.95704 0.94379 0.92449 0.83246 0.90562 0.95488 0.77977 0.83578 0.82846 0.82807 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.89 37.16 0.33 -2.59 16 2 C 0.18 4.07 2.19 -68.87 -0.15 3.91 16 3 H 0.00 0.00 6.86 -51.93 -0.36 -0.36 16 4 C -0.52 -14.06 9.17 -34.44 -0.32 -14.37 16 5 H 0.08 2.32 7.86 -52.48 -0.41 1.91 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 8 Si 0.89 21.33 24.37 -169.99 -4.14 17.18 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 12 N -0.67 -12.30 6.30 -107.95 -0.68 -12.98 16 13 C 0.03 0.43 5.17 -3.82 -0.02 0.41 16 14 C 0.14 1.50 3.48 -27.88 -0.10 1.40 16 15 H 0.13 1.33 8.05 -51.93 -0.42 0.92 16 16 O -0.54 -6.07 12.47 -35.23 -0.44 -6.51 16 17 C -0.05 -0.47 5.00 -104.62 -0.52 -0.99 16 18 C -0.11 -0.89 9.33 -39.58 -0.37 -1.26 16 19 C -0.05 -0.43 9.56 -39.58 -0.38 -0.81 16 20 C -0.05 -0.52 6.85 -79.95 -0.55 -1.07 16 21 N 0.03 0.37 4.45 33.96 0.15 0.52 16 22 O -0.16 -2.09 18.45 -29.46 -0.54 -2.63 16 23 O -0.16 -2.10 18.45 -29.46 -0.54 -2.64 16 24 C -0.05 -0.44 9.56 -39.58 -0.38 -0.82 16 25 C -0.11 -0.86 9.68 -39.58 -0.38 -1.24 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.02 0.44 7.45 -51.93 -0.39 0.05 16 28 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.35 6.52 7.61 -39.29 -0.30 6.22 16 31 H 0.08 1.03 7.44 -51.93 -0.39 0.64 16 32 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.37 2.95 7.39 45.56 0.34 3.28 16 34 H 0.15 0.84 6.62 -52.48 -0.35 0.49 16 35 H 0.15 1.11 7.61 -52.49 -0.40 0.71 16 36 H 0.15 1.09 7.61 -52.49 -0.40 0.69 16 37 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -31.43 313.65 -7.31 -38.75 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.68 Total: 4.92 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.93 Total: -15.50 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.24 Total: -38.28 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.53 Total: -11.79 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.43 -7.31 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336699030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.723 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds