Wall clock time and date at job start Tue Mar 31 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.47282 * 60.00347 * 14 13 12 16 16 O 1.42897 * 109.47270 * 300.00002 * 14 13 12 17 17 C 1.50704 * 109.46831 * 180.02562 * 14 13 12 18 18 C 1.38233 * 120.00375 * 84.72811 * 17 14 13 19 19 C 1.38234 * 120.00400 * 179.78898 * 18 17 14 20 20 C 1.38243 * 119.99525 * 0.45961 * 19 18 17 21 21 N 1.48008 * 119.99799 * 179.79086 * 20 19 18 22 22 O 1.21805 * 120.00444 * 179.97438 * 21 20 19 23 23 O 1.21803 * 120.00416 * 359.97438 * 21 20 19 24 24 C 1.38235 * 120.00091 * 359.77192 * 20 19 18 25 25 C 1.38232 * 119.99842 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 30 30 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 31 31 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 32 32 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 33 33 H 0.96705 * 114.00020 * 300.00248 * 16 14 13 34 34 H 1.08007 * 119.99725 * 359.97438 * 18 17 14 35 35 H 1.07994 * 120.00586 * 180.25040 * 19 18 17 36 36 H 1.07996 * 119.99872 * 180.02562 * 24 20 19 37 37 H 1.08010 * 119.99665 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5952 -0.5332 -3.5744 15 1 1.9185 -1.3566 -3.8029 16 8 3.9000 -1.0498 -3.3051 17 6 2.6602 0.4057 -4.7514 18 6 3.7724 1.2053 -4.9371 19 6 3.8339 2.0634 -6.0192 20 6 2.7790 2.1287 -6.9103 21 7 2.8429 3.0508 -8.0663 22 8 1.9137 3.1081 -8.8517 23 8 3.8246 3.7524 -8.2323 24 6 1.6648 1.3326 -6.7219 25 6 1.6052 0.4715 -5.6421 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.9026 -0.5283 4.4376 30 1 2.9173 -1.1205 -1.0286 31 1 1.0872 0.6163 -2.5525 32 1 2.7589 1.0462 -2.1181 33 1 4.5557 -0.3712 -3.0934 34 1 4.5946 1.1575 -4.2384 35 1 4.7045 2.6851 -6.1666 36 1 0.8409 1.3833 -7.4183 37 1 0.7343 -0.1502 -5.4947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336699030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:56 Heat of formation + Delta-G solvation = -46.070771 kcal Electronic energy + Delta-G solvation = -21152.592132 eV Core-core repulsion = 17704.405528 eV Total energy + Delta-G solvation = -3448.186604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.29574 -41.01693 -38.72064 -37.72732 -37.14521 -34.47240 -33.50718 -32.42620 -31.72144 -29.07314 -27.30209 -26.53300 -24.31534 -23.88821 -22.30389 -21.75948 -20.44779 -19.80122 -19.00276 -18.65192 -18.31670 -17.50970 -17.05139 -16.26457 -15.88014 -15.77554 -15.56962 -15.03977 -14.89925 -14.63371 -14.41932 -14.12260 -13.97863 -13.36185 -13.11352 -12.80170 -12.75731 -12.61330 -12.53701 -12.38625 -12.35142 -12.20960 -12.06412 -11.49352 -11.27743 -11.03821 -10.79494 -10.42805 -10.40428 -9.17351 -8.32639 -6.37628 -1.31346 -0.05866 0.21032 0.33384 1.30388 1.33811 1.44478 2.18657 2.29076 3.02193 3.08430 3.33074 3.38353 3.48208 3.74027 3.88309 3.91024 4.07662 4.21374 4.25704 4.49040 4.63712 4.68224 4.69585 4.71607 4.75200 4.82645 4.90220 5.00500 5.10856 5.22734 5.42253 5.48621 5.62690 5.95975 6.42764 6.48505 6.61604 6.68938 6.82946 7.29362 8.83862 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.003278 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.447688 B = 8539.981704 C = 8831.407595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.187 3.813 3 H -0.002 1.002 4 C -0.526 4.526 5 H 0.040 0.960 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.249 1.249 12 N -0.677 5.677 13 C 0.031 3.969 14 C 0.156 3.844 15 H 0.126 0.874 16 O -0.559 6.559 17 C -0.055 4.055 18 C -0.109 4.109 19 C -0.052 4.052 20 C -0.067 4.067 21 N 0.031 4.969 22 O -0.179 6.179 23 O -0.184 6.184 24 C -0.052 4.052 25 C -0.102 4.102 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.267 0.733 30 H 0.342 0.658 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.386 0.614 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 5.699 -20.316 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.077 3.923 3 H 0.015 0.985 4 C -0.564 4.564 5 H 0.058 0.942 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.228 1.228 11 H -0.173 1.173 12 N -0.309 5.309 13 C -0.099 4.099 14 C 0.096 3.904 15 H 0.144 0.856 16 O -0.367 6.367 17 C -0.057 4.057 18 C -0.127 4.127 19 C -0.071 4.071 20 C -0.150 4.150 21 N 0.545 4.455 22 O -0.393 6.393 23 O -0.396 6.396 24 C -0.071 4.071 25 C -0.120 4.120 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.236 0.764 34 H 0.186 0.814 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.722 4.458 -19.882 20.388 hybrid contribution 0.724 1.816 0.624 2.052 sum 0.001 6.274 -19.258 20.254 Atomic orbital electron populations 1.22007 0.97307 1.01110 0.98986 1.19366 0.92796 0.92143 0.87967 0.98470 1.21427 1.31471 1.12729 0.90775 0.94151 1.25808 0.97215 0.99997 0.95393 1.70039 1.47514 1.42432 0.98664 0.85793 0.79178 0.79817 0.77184 1.19299 1.22785 1.17314 1.60377 1.33566 1.32498 1.04497 1.22715 1.01806 0.94096 0.91301 1.20918 0.85692 0.95022 0.88758 0.85602 1.86692 1.19626 1.38582 1.91778 1.21188 0.94061 0.94604 0.95802 1.21229 0.99531 0.94525 0.97443 1.21204 0.97161 0.97185 0.91533 1.21384 1.01847 1.00231 0.91506 1.43964 0.99466 1.00160 1.01886 1.94519 1.30087 1.73311 1.41361 1.94525 1.23522 1.41082 1.80491 1.21276 0.95968 0.91733 0.98087 1.21368 0.99972 0.98496 0.92183 0.92967 0.92158 0.95281 0.92449 0.83915 0.89721 0.94933 0.76416 0.81429 0.81855 0.81576 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.89 71.98 0.64 -4.72 16 2 C 0.19 7.98 2.19 44.17 0.10 8.08 16 3 H 0.00 -0.09 6.86 -2.39 -0.02 -0.11 16 4 C -0.53 -28.52 9.17 25.60 0.23 -28.29 16 5 H 0.04 2.44 7.86 -2.91 -0.02 2.42 16 6 C 0.01 0.77 5.45 84.65 0.46 1.23 16 7 N -0.95 -57.59 13.96 21.45 0.30 -57.29 16 8 Si 0.95 43.24 24.37 68.60 1.67 44.91 16 9 H -0.27 -11.59 6.87 99.48 0.68 -10.91 16 10 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 11 H -0.25 -10.36 6.53 99.48 0.65 -9.71 16 12 N -0.68 -23.60 6.30 -495.46 -3.12 -26.72 16 13 C 0.03 0.74 5.17 86.30 0.45 1.19 16 14 C 0.16 2.83 3.48 29.85 0.10 2.93 16 15 H 0.13 2.30 8.05 -2.39 -0.02 2.28 16 16 O -0.56 -11.16 12.47 -148.98 -1.86 -13.01 16 17 C -0.06 -0.79 5.00 -19.86 -0.10 -0.89 16 18 C -0.11 -1.40 9.33 22.27 0.21 -1.19 16 19 C -0.05 -0.78 9.56 22.27 0.21 -0.56 16 20 C -0.07 -1.22 6.85 36.38 0.25 -0.97 16 21 N 0.03 0.73 4.45 -46.47 -0.21 0.52 16 22 O -0.18 -4.47 18.45 18.88 0.35 -4.12 16 23 O -0.18 -4.65 18.45 18.88 0.35 -4.30 16 24 C -0.05 -0.75 9.56 22.27 0.21 -0.54 16 25 C -0.10 -1.26 9.68 22.27 0.22 -1.05 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 1.92 7.45 -2.39 -0.02 1.91 16 28 H 0.03 1.18 3.27 -2.38 -0.01 1.18 16 29 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.34 12.60 7.61 -89.70 -0.68 11.92 16 31 H 0.08 1.94 7.44 -2.39 -0.02 1.92 16 32 H 0.03 0.77 8.06 -2.39 -0.02 0.75 16 33 H 0.39 5.12 7.39 -74.05 -0.55 4.57 16 34 H 0.17 1.35 6.62 -2.91 -0.02 1.33 16 35 H 0.16 2.06 7.61 -2.91 -0.02 2.04 16 36 H 0.17 1.95 7.61 -2.91 -0.02 1.93 16 37 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -68.66 313.65 0.27 -68.39 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.19 Total: 16.39 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 2.98 Total: -24.77 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.03 Total: -83.49 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.16 Total: -21.43 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.67 Total: 44.91 kcal Total: -68.66 0.27 -68.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336699030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.317 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds