Wall clock time and date at job start Tue Mar 31 2020 01:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47264 * 2 1 4 4 C 1.50697 * 109.47445 * 239.99971 * 2 1 3 5 5 H 1.08000 * 120.00256 * 240.00708 * 4 2 1 6 6 C 1.37882 * 119.99872 * 60.00101 * 4 2 1 7 7 N 1.31515 * 119.99791 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99978 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47485 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47293 * 120.00054 * 8 6 4 11 11 H 1.48506 * 109.46915 * 239.99773 * 8 6 4 12 12 C 1.50704 * 109.47069 * 120.00000 * 2 1 3 13 13 O 1.21287 * 119.99839 * 93.79278 * 12 2 1 14 14 N 1.34774 * 120.00082 * 273.51515 * 12 2 1 15 15 C 1.48151 * 127.83840 * 354.92955 * 14 12 2 16 16 C 1.53992 * 104.81640 * 219.53634 * 15 14 12 17 17 H 1.08993 * 110.15676 * 95.23224 * 16 15 14 18 18 C 1.52992 * 110.57298 * 217.41939 * 16 15 14 19 19 F 1.39905 * 109.47115 * 175.72623 * 18 16 15 20 20 F 1.39897 * 109.47481 * 295.72434 * 18 16 15 21 21 F 1.39908 * 109.47380 * 55.72754 * 18 16 15 22 22 C 1.54284 * 104.99974 * 336.43400 * 16 15 14 23 23 H 1.08998 * 110.34549 * 240.93365 * 22 16 15 24 24 N 1.46900 * 110.34403 * 118.67747 * 22 16 15 25 25 C 1.48144 * 127.83906 * 175.25137 * 14 12 2 26 26 H 1.08996 * 109.47348 * 174.10906 * 1 2 3 27 27 H 1.09004 * 109.47469 * 294.10714 * 1 2 3 28 28 H 1.08998 * 109.47290 * 54.10679 * 1 2 3 29 29 H 0.97000 * 120.00220 * 180.02562 * 7 6 4 30 30 H 1.09000 * 110.40391 * 338.37404 * 15 14 12 31 31 H 1.09000 * 110.40417 * 100.80063 * 15 14 12 32 32 H 1.00894 * 111.00312 * 183.00541 * 24 22 16 33 33 H 1.00903 * 110.99547 * 306.96489 * 24 22 16 34 34 H 1.09008 * 110.40968 * 259.20009 * 25 14 12 35 35 H 1.09000 * 110.40670 * 21.51021 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1467 -0.1872 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.2999 -1.8924 1.1815 14 7 2.1894 -0.0311 2.3839 15 6 2.0226 1.4232 2.6120 16 6 3.1631 1.8042 3.5740 17 1 4.0182 2.1802 3.0125 18 6 2.6881 2.8519 4.5827 19 9 3.7094 3.1092 5.5037 20 9 2.3596 4.0330 3.9088 21 9 1.5611 2.3715 5.2583 22 6 3.5311 0.4918 4.2968 23 1 3.3718 0.5929 5.3703 24 7 4.9273 0.1297 4.0185 25 6 2.5745 -0.5683 3.7097 26 1 -0.3634 -1.0222 -0.1055 27 1 -0.3634 0.4198 0.9381 28 1 -0.3634 0.6025 -0.8325 29 1 0.7081 1.1609 -3.4843 30 1 2.1200 1.9687 1.6734 31 1 1.0560 1.6271 3.0727 32 1 5.1642 -0.7527 4.4466 33 1 5.1044 0.1090 3.0254 34 1 1.6954 -0.6801 4.3445 35 1 3.0860 -1.5244 3.5984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342550010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:35 Heat of formation + Delta-G solvation = -188.905686 kcal Electronic energy + Delta-G solvation = -23169.909543 eV Core-core repulsion = 19173.672412 eV Total energy + Delta-G solvation = -3996.237131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.20010 -47.67519 -47.65399 -39.80876 -37.51655 -33.87655 -33.36053 -31.36026 -30.53075 -27.61067 -25.71247 -25.25274 -23.54846 -21.91313 -20.70582 -19.05371 -18.56994 -18.27356 -17.68970 -16.57492 -16.15959 -15.36003 -15.15722 -15.03165 -14.83517 -14.49997 -14.45134 -14.13253 -14.07576 -13.82844 -13.78074 -13.40794 -12.95014 -12.71472 -12.37881 -12.10622 -11.85760 -11.72611 -11.54359 -11.25375 -11.06698 -10.79581 -10.71894 -10.34196 -10.09291 -9.20470 -9.07211 -8.75516 -8.44215 -8.28494 -6.11815 -4.15698 2.57028 3.26945 3.30592 3.35446 3.42224 3.45796 3.67072 3.75061 3.89511 4.33461 4.40165 4.51666 4.66687 4.83210 5.04206 5.17244 5.21888 5.50071 5.62067 5.67578 5.72938 5.90843 6.48642 6.62614 6.76904 6.85375 6.89915 7.20725 7.36244 7.66928 7.87809 7.99043 8.24560 8.89560 9.01231 9.49698 10.95952 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.004971 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.633275 B = 5631.822675 C = 6025.164171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.036 3.964 3 H 0.047 0.953 4 C -0.504 4.504 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.545 3.455 13 O -0.540 6.540 14 N -0.631 5.631 15 C 0.110 3.890 16 C -0.152 4.152 17 H 0.133 0.867 18 C 0.465 3.535 19 F -0.178 7.178 20 F -0.179 7.179 21 F -0.181 7.181 22 C 0.089 3.911 23 H 0.101 0.899 24 N -0.834 5.834 25 C 0.065 3.935 26 H 0.036 0.964 27 H 0.011 0.989 28 H 0.092 0.908 29 H 0.262 0.738 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.348 0.652 33 H 0.349 0.651 34 H 0.071 0.929 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 4.677 14.585 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.015 3.985 3 H 0.064 0.936 4 C -0.542 4.542 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.338 3.662 13 O -0.415 6.415 14 N -0.368 5.368 15 C -0.014 4.014 16 C -0.173 4.173 17 H 0.151 0.849 18 C 0.410 3.590 19 F -0.160 7.160 20 F -0.161 7.161 21 F -0.163 7.163 22 C -0.025 4.025 23 H 0.119 0.881 24 N -0.364 5.364 25 C -0.060 4.060 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.089 0.911 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.420 4.732 14.695 15.812 hybrid contribution -0.252 -0.929 -1.032 1.412 sum 3.168 3.803 13.663 14.532 Atomic orbital electron populations 1.21678 0.95883 1.01106 0.99866 1.18889 0.94391 0.96548 0.88648 0.93567 1.21077 1.31551 1.12607 0.88992 0.91233 1.24936 0.94968 0.94998 0.99120 1.69884 1.36736 1.22946 1.23649 0.86388 0.78691 0.79735 0.82399 1.19598 1.20900 1.20959 1.21938 0.74585 0.87154 0.82496 1.90562 1.50344 1.16698 1.83871 1.49314 1.71690 1.07373 1.08458 1.22186 0.95941 0.83648 0.99660 1.23484 1.02823 0.94766 0.96200 0.84943 1.20224 0.75221 0.82081 0.81482 1.93204 1.59535 1.94666 1.68562 1.93209 1.92778 1.50156 1.79917 1.93181 1.53345 1.87935 1.81827 1.22316 0.88762 0.91751 0.99655 0.88068 1.58975 1.19331 1.39039 1.19042 1.23159 0.98913 0.98232 0.85729 0.94494 0.96980 0.88935 0.92846 0.87730 0.90343 0.83828 0.83699 0.91074 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.86 37.15 0.33 -2.62 16 2 C 0.04 0.87 2.27 -92.93 -0.21 0.66 16 3 H 0.05 1.12 6.59 -51.93 -0.34 0.77 16 4 C -0.50 -13.88 8.33 -34.44 -0.29 -14.17 16 5 H 0.07 2.02 7.05 -52.49 -0.37 1.65 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.45 11.39 55.43 0.63 -23.82 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.55 12.05 7.00 -10.98 -0.08 11.98 16 13 O -0.54 -13.68 16.10 5.55 0.09 -13.60 16 14 N -0.63 -10.59 3.32 -169.54 -0.56 -11.16 16 15 C 0.11 1.51 6.21 -2.62 -0.02 1.50 16 16 C -0.15 -1.73 2.78 -89.43 -0.25 -1.98 16 17 H 0.13 1.46 7.91 -51.93 -0.41 1.05 16 18 C 0.46 5.23 2.53 37.15 0.09 5.32 16 19 F -0.18 -2.07 16.93 2.25 0.04 -2.03 16 20 F -0.18 -2.15 17.17 2.25 0.04 -2.11 16 21 F -0.18 -2.08 16.06 2.25 0.04 -2.04 16 22 C 0.09 0.97 3.50 -66.31 -0.23 0.74 16 23 H 0.10 1.00 7.40 -51.93 -0.38 0.62 16 24 N -0.83 -8.77 9.19 -3.48 -0.03 -8.80 16 25 C 0.07 0.87 6.77 -2.41 -0.02 0.85 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 2.31 6.25 -51.93 -0.32 1.98 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.10 1.51 6.60 -51.93 -0.34 1.17 16 31 H 0.08 1.01 7.22 -51.93 -0.37 0.63 16 32 H 0.35 3.14 9.04 -39.30 -0.36 2.78 16 33 H 0.35 4.05 8.93 -39.29 -0.35 3.70 16 34 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.08 1.21 7.74 -51.93 -0.40 0.81 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -29.96 302.04 -5.05 -35.02 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.06 Total: 3.89 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.76 Total: 3.84 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.04 Total: -43.78 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.96 -5.05 -35.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342550010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.891 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds