Wall clock time and date at job start Tue Mar 31 2020 01:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47264 * 2 1 4 4 C 1.50697 * 109.47445 * 239.99971 * 2 1 3 5 5 H 1.08000 * 120.00256 * 240.00708 * 4 2 1 6 6 C 1.37882 * 119.99872 * 60.00101 * 4 2 1 7 7 N 1.31515 * 119.99791 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99978 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47485 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47293 * 120.00054 * 8 6 4 11 11 H 1.48506 * 109.46915 * 239.99773 * 8 6 4 12 12 C 1.50704 * 109.47069 * 120.00000 * 2 1 3 13 13 O 1.21287 * 119.99839 * 93.79278 * 12 2 1 14 14 N 1.34774 * 120.00082 * 273.51515 * 12 2 1 15 15 C 1.48151 * 127.83840 * 354.92955 * 14 12 2 16 16 C 1.53992 * 104.81640 * 219.53634 * 15 14 12 17 17 H 1.08993 * 110.15676 * 95.23224 * 16 15 14 18 18 C 1.52992 * 110.57298 * 217.41939 * 16 15 14 19 19 F 1.39905 * 109.47115 * 175.72623 * 18 16 15 20 20 F 1.39897 * 109.47481 * 295.72434 * 18 16 15 21 21 F 1.39908 * 109.47380 * 55.72754 * 18 16 15 22 22 C 1.54284 * 104.99974 * 336.43400 * 16 15 14 23 23 H 1.08998 * 110.34549 * 240.93365 * 22 16 15 24 24 N 1.46900 * 110.34403 * 118.67747 * 22 16 15 25 25 C 1.48144 * 127.83906 * 175.25137 * 14 12 2 26 26 H 1.08996 * 109.47348 * 174.10906 * 1 2 3 27 27 H 1.09004 * 109.47469 * 294.10714 * 1 2 3 28 28 H 1.08998 * 109.47290 * 54.10679 * 1 2 3 29 29 H 0.97000 * 120.00220 * 180.02562 * 7 6 4 30 30 H 1.09000 * 110.40391 * 338.37404 * 15 14 12 31 31 H 1.09000 * 110.40417 * 100.80063 * 15 14 12 32 32 H 1.00894 * 111.00312 * 183.00541 * 24 22 16 33 33 H 1.00903 * 110.99547 * 306.96489 * 24 22 16 34 34 H 1.09008 * 110.40968 * 259.20009 * 25 14 12 35 35 H 1.09000 * 110.40670 * 21.51021 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1467 -0.1872 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.2999 -1.8924 1.1815 14 7 2.1894 -0.0311 2.3839 15 6 2.0226 1.4232 2.6120 16 6 3.1631 1.8042 3.5740 17 1 4.0182 2.1802 3.0125 18 6 2.6881 2.8519 4.5827 19 9 3.7094 3.1092 5.5037 20 9 2.3596 4.0330 3.9088 21 9 1.5611 2.3715 5.2583 22 6 3.5311 0.4918 4.2968 23 1 3.3718 0.5929 5.3703 24 7 4.9273 0.1297 4.0185 25 6 2.5745 -0.5683 3.7097 26 1 -0.3634 -1.0222 -0.1055 27 1 -0.3634 0.4198 0.9381 28 1 -0.3634 0.6025 -0.8325 29 1 0.7081 1.1609 -3.4843 30 1 2.1200 1.9687 1.6734 31 1 1.0560 1.6271 3.0727 32 1 5.1642 -0.7527 4.4466 33 1 5.1044 0.1090 3.0254 34 1 1.6954 -0.6801 4.3445 35 1 3.0860 -1.5244 3.5984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342550010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:35 Heat of formation + Delta-G solvation = -209.713158 kcal Electronic energy + Delta-G solvation = -23170.811823 eV Core-core repulsion = 19173.672412 eV Total energy + Delta-G solvation = -3997.139411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.11638 -48.59082 -48.56965 -41.17731 -38.99278 -35.82443 -34.59288 -32.55789 -32.33026 -28.76021 -27.29212 -26.87810 -24.84566 -23.42780 -21.71934 -20.46658 -19.52108 -19.22107 -18.77929 -18.37949 -17.87624 -16.89838 -16.37452 -16.20656 -15.96436 -15.87941 -15.43905 -15.30138 -14.99795 -14.87091 -14.72895 -14.69046 -14.64258 -14.38782 -13.68520 -13.44716 -13.17660 -12.97373 -12.90368 -12.74194 -12.66315 -12.60577 -12.37035 -12.14645 -12.07815 -11.07741 -10.67365 -10.42331 -10.21384 -9.52740 -8.18424 -6.28966 1.38908 1.41605 1.52779 1.58483 1.78739 2.02256 2.43343 2.71538 2.76495 2.90411 3.12002 3.38621 3.55575 3.70615 3.86285 4.05509 4.09555 4.20491 4.44761 4.61933 4.65562 4.71610 4.74895 4.88980 4.98347 5.20681 5.43708 5.68264 5.87394 5.96434 6.13763 6.37073 6.51666 6.77091 7.30737 7.41157 8.87960 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.004971 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.633275 B = 5631.822675 C = 6025.164171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.032 3.968 3 H 0.045 0.955 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.272 1.272 12 C 0.547 3.453 13 O -0.583 6.583 14 N -0.627 5.627 15 C 0.105 3.895 16 C -0.143 4.143 17 H 0.139 0.861 18 C 0.473 3.527 19 F -0.177 7.177 20 F -0.183 7.183 21 F -0.180 7.180 22 C 0.100 3.900 23 H 0.122 0.878 24 N -0.832 5.832 25 C 0.063 3.937 26 H 0.019 0.981 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.266 0.734 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.358 0.642 33 H 0.343 0.657 34 H 0.089 0.911 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 5.443 15.739 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.011 3.989 3 H 0.063 0.937 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.197 1.197 12 C 0.339 3.661 13 O -0.462 6.462 14 N -0.361 5.361 15 C -0.018 4.018 16 C -0.164 4.164 17 H 0.157 0.843 18 C 0.418 3.582 19 F -0.158 7.158 20 F -0.164 7.164 21 F -0.161 7.161 22 C -0.014 4.014 23 H 0.140 0.860 24 N -0.362 5.362 25 C -0.062 4.062 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.696 5.544 15.899 17.239 hybrid contribution -0.340 -1.117 -1.315 1.758 sum 3.357 4.427 14.584 15.607 Atomic orbital electron populations 1.21495 0.95324 0.99812 1.00686 1.18799 0.94891 0.96178 0.89063 0.93734 1.21205 1.32041 1.12416 0.91035 0.93740 1.25566 0.95071 0.95655 1.01367 1.69950 1.36906 1.23460 1.24425 0.85546 0.78335 0.78621 0.79413 1.20397 1.20181 1.19723 1.21331 0.74756 0.86483 0.83507 1.90533 1.52521 1.18272 1.84876 1.49033 1.69873 1.08856 1.08387 1.22353 0.97773 0.81508 1.00164 1.23371 1.01983 0.95161 0.95884 0.84350 1.20044 0.75163 0.81733 0.81256 1.93212 1.59532 1.94636 1.68463 1.93210 1.92801 1.50389 1.80023 1.93190 1.53295 1.87883 1.81781 1.22296 0.88261 0.90396 1.00410 0.85982 1.58999 1.18766 1.39775 1.18648 1.23443 1.00236 0.98609 0.83886 0.96157 0.93913 0.90759 0.92463 0.88549 0.88805 0.82723 0.84375 0.89300 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.34 8.86 71.98 0.64 -4.71 16 2 C 0.03 1.55 2.27 -12.29 -0.03 1.53 16 3 H 0.04 2.17 6.59 -2.39 -0.02 2.16 16 4 C -0.53 -29.79 8.33 25.60 0.21 -29.58 16 5 H 0.04 2.68 7.05 -2.91 -0.02 2.66 16 6 C 0.02 1.27 5.30 84.66 0.45 1.71 16 7 N -0.91 -49.77 11.39 21.45 0.24 -49.52 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 C 0.55 24.34 7.00 87.66 0.61 24.96 16 13 O -0.58 -30.21 16.10 -3.05 -0.05 -30.26 16 14 N -0.63 -20.38 3.32 -808.71 -2.68 -23.06 16 15 C 0.11 2.70 6.21 86.40 0.54 3.24 16 16 C -0.14 -2.92 2.78 -10.03 -0.03 -2.95 16 17 H 0.14 2.74 7.91 -2.39 -0.02 2.72 16 18 C 0.47 9.33 2.53 71.98 0.18 9.51 16 19 F -0.18 -3.59 16.93 44.97 0.76 -2.83 16 20 F -0.18 -3.95 17.17 44.97 0.77 -3.18 16 21 F -0.18 -3.57 16.06 44.97 0.72 -2.85 16 22 C 0.10 1.92 3.50 45.82 0.16 2.08 16 23 H 0.12 1.96 7.40 -2.39 -0.02 1.94 16 24 N -0.83 -15.73 9.19 -164.92 -1.52 -17.25 16 25 C 0.06 1.56 6.77 86.53 0.59 2.14 16 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.07 3.72 6.25 -2.39 -0.01 3.70 16 29 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.10 2.67 6.60 -2.39 -0.02 2.66 16 31 H 0.09 2.17 7.22 -2.39 -0.02 2.15 16 32 H 0.36 5.70 9.04 -89.70 -0.81 4.89 16 33 H 0.34 7.47 8.93 -89.69 -0.80 6.67 16 34 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.08 2.06 7.74 -2.39 -0.02 2.04 16 Total: -1.00 -64.35 302.04 3.14 -61.21 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.46 Total: 13.93 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 3.32 Total: 7.94 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -3.96 Total: -89.83 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 9 Polarization: -11.12 SS G_CDS: 2.26 Total: -8.86 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.35 3.14 -61.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342550010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.501 kcal (2) G-P(sol) polarization free energy of solvation -64.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds