Wall clock time and date at job start Tue Mar 31 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47216 * 2 1 4 4 C 1.50701 * 109.47228 * 120.00312 * 2 1 3 5 5 H 1.08003 * 120.00222 * 119.99721 * 4 2 1 6 6 C 1.37874 * 119.99830 * 299.99915 * 4 2 1 7 7 N 1.31512 * 120.00285 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46741 * 89.99698 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99979 * 8 6 4 11 11 H 1.48501 * 109.46770 * 330.00378 * 8 6 4 12 12 C 1.50700 * 109.47112 * 239.99993 * 2 1 3 13 13 O 1.21281 * 120.00401 * 240.00159 * 12 2 1 14 14 N 1.34784 * 119.99492 * 60.00076 * 12 2 1 15 15 C 1.48145 * 127.83336 * 180.02562 * 14 12 2 16 16 C 1.54395 * 104.61454 * 219.58574 * 15 14 12 17 17 H 1.09002 * 110.34481 * 95.00280 * 16 15 14 18 18 C 1.52998 * 110.43060 * 217.21687 * 16 15 14 19 19 F 1.39904 * 109.47152 * 177.06092 * 18 16 15 20 20 F 1.39900 * 109.47330 * 297.06252 * 18 16 15 21 21 F 1.39897 * 109.47282 * 57.06159 * 18 16 15 22 22 C 1.54281 * 104.95731 * 336.13228 * 16 15 14 23 23 H 1.09003 * 110.34267 * 241.12661 * 22 16 15 24 24 N 1.46906 * 110.34335 * 118.87296 * 22 16 15 25 25 C 1.48140 * 127.83889 * 0.02562 * 14 12 2 26 26 H 1.09002 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46902 * 299.99791 * 1 2 3 28 28 H 1.08998 * 109.47047 * 59.99251 * 1 2 3 29 29 H 0.97006 * 120.00316 * 180.02562 * 7 6 4 30 30 H 1.08990 * 110.41068 * 100.80264 * 15 14 12 31 31 H 1.09000 * 110.40585 * 338.36403 * 15 14 12 32 32 H 1.00901 * 111.00126 * 179.97438 * 24 22 16 33 33 H 1.00893 * 110.99833 * 303.95435 * 24 22 16 34 34 H 1.08998 * 110.41105 * 21.63503 * 25 14 12 35 35 H 1.08999 * 110.51120 * 259.24571 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4859 -2.5664 3.7118 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1002 -0.8073 -3.7695 16 6 2.3915 0.4301 -4.6458 17 1 3.4562 0.6630 -4.6308 18 6 1.9206 0.1905 -6.0817 19 9 2.1326 1.3463 -6.8410 20 9 2.6417 -0.8716 -6.6378 21 9 0.5571 -0.1223 -6.0793 22 6 1.5830 1.5745 -4.0001 23 1 0.8492 1.9648 -4.7054 24 7 2.4827 2.6461 -3.5524 25 6 0.8741 0.9286 -2.7903 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7088 1.1611 3.4845 30 1 1.2836 -1.3905 -4.1949 31 1 2.9953 -1.4213 -3.6695 32 1 1.9638 3.4005 -3.1286 33 1 3.1836 2.2892 -2.9205 34 1 0.8440 1.6241 -1.9516 35 1 -0.1348 0.6184 -3.0622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342550011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:37 Heat of formation + Delta-G solvation = -187.049479 kcal Electronic energy + Delta-G solvation = -23141.764012 eV Core-core repulsion = 19145.607372 eV Total energy + Delta-G solvation = -3996.156640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.23509 -47.71490 -47.68745 -39.83157 -37.49273 -33.91652 -33.27088 -31.77029 -30.21123 -27.54053 -25.85792 -25.22524 -23.52576 -21.80149 -20.76644 -19.15723 -18.62936 -18.31684 -17.68946 -16.50386 -16.01650 -15.38090 -15.32356 -15.03463 -14.74160 -14.54150 -14.38735 -14.16507 -14.11755 -13.85431 -13.82237 -13.47201 -13.23307 -12.70030 -12.17750 -12.07093 -11.89719 -11.75209 -11.57756 -11.21586 -11.05797 -10.79632 -10.68042 -10.35701 -10.04405 -9.20309 -9.05936 -8.77003 -8.43452 -8.27818 -6.11944 -4.15580 2.54533 3.28221 3.30142 3.35146 3.43382 3.45065 3.64834 3.74790 3.87673 4.33944 4.40144 4.50286 4.67378 4.82913 5.03413 5.17465 5.21827 5.50480 5.59117 5.70692 5.74019 5.92107 6.43564 6.56649 6.72327 6.83287 6.89238 7.24578 7.34900 7.64366 7.88963 8.00294 8.25546 8.92724 9.02257 9.50537 10.95573 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.035641 B = 0.004464 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.415456 B = 6271.080052 C = 6554.540005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.038 3.962 3 H 0.050 0.950 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.542 3.458 13 O -0.537 6.537 14 N -0.630 5.630 15 C 0.108 3.892 16 C -0.150 4.150 17 H 0.130 0.870 18 C 0.464 3.536 19 F -0.178 7.178 20 F -0.182 7.182 21 F -0.181 7.181 22 C 0.086 3.914 23 H 0.102 0.898 24 N -0.835 5.835 25 C 0.071 3.929 26 H 0.031 0.969 27 H 0.094 0.906 28 H 0.017 0.983 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.351 0.649 33 H 0.349 0.651 34 H 0.095 0.905 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 3.801 -15.465 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.334 3.666 13 O -0.411 6.411 14 N -0.368 5.368 15 C -0.016 4.016 16 C -0.171 4.171 17 H 0.148 0.852 18 C 0.409 3.591 19 F -0.159 7.159 20 F -0.163 7.163 21 F -0.162 7.162 22 C -0.028 4.028 23 H 0.120 0.880 24 N -0.365 5.365 25 C -0.055 4.055 26 H 0.050 0.950 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.113 0.887 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.458 3.382 -15.900 16.262 hybrid contribution -0.229 -0.619 1.392 1.540 sum -0.687 2.763 -14.509 14.785 Atomic orbital electron populations 1.21871 0.96409 1.00083 1.01231 1.18826 0.94260 0.96545 0.88628 0.93191 1.21131 1.31222 1.12979 0.88898 0.90766 1.24938 0.94968 0.95050 0.99142 1.69858 1.36891 1.23083 1.23684 0.86430 0.78479 0.80288 0.81919 1.20590 1.21224 1.19704 1.21951 0.78024 0.84058 0.82519 1.90565 1.38153 1.26859 1.85528 1.49297 1.52882 1.30088 1.04513 1.22116 1.02171 0.93337 0.84025 1.23522 1.04769 0.99540 0.89235 0.85158 1.20264 0.75232 0.73960 0.89616 1.93206 1.94571 1.49600 1.78554 1.93195 1.77884 1.57752 1.87502 1.93181 1.33160 1.92939 1.96961 1.22371 0.93607 0.90346 0.96444 0.87978 1.58938 1.17548 1.11035 1.48967 1.23332 0.95127 0.89250 0.97815 0.94980 0.88758 0.96398 0.92867 0.90722 0.88699 0.83521 0.83738 0.88724 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.72 37.16 0.32 -2.72 16 2 C 0.04 0.91 1.97 -92.92 -0.18 0.73 16 3 H 0.05 1.22 7.95 -51.93 -0.41 0.80 16 4 C -0.50 -13.91 8.37 -34.44 -0.29 -14.20 16 5 H 0.07 2.18 6.75 -52.48 -0.35 1.82 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.54 11.94 7.26 -10.98 -0.08 11.86 16 13 O -0.54 -13.70 15.73 5.56 0.09 -13.61 16 14 N -0.63 -10.48 3.31 -169.31 -0.56 -11.04 16 15 C 0.11 1.49 6.36 -2.41 -0.02 1.47 16 16 C -0.15 -1.68 2.81 -89.22 -0.25 -1.93 16 17 H 0.13 1.41 7.95 -51.93 -0.41 1.00 16 18 C 0.46 5.14 2.52 37.16 0.09 5.23 16 19 F -0.18 -2.04 17.00 2.25 0.04 -2.00 16 20 F -0.18 -2.12 17.14 2.25 0.04 -2.08 16 21 F -0.18 -2.06 16.05 2.25 0.04 -2.03 16 22 C 0.09 0.92 3.49 -66.31 -0.23 0.69 16 23 H 0.10 1.00 7.40 -51.93 -0.38 0.61 16 24 N -0.83 -8.58 9.16 -3.48 -0.03 -8.62 16 25 C 0.07 0.92 4.95 -2.41 -0.01 0.91 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 28 H 0.02 0.32 5.35 -51.93 -0.28 0.04 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.07 0.98 7.27 -51.93 -0.38 0.60 16 31 H 0.09 1.39 7.88 -51.93 -0.41 0.98 16 32 H 0.35 3.12 9.08 -39.29 -0.36 2.76 16 33 H 0.35 3.91 8.98 -39.30 -0.35 3.56 16 34 H 0.09 1.29 6.48 -51.93 -0.34 0.95 16 35 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 LS Contribution 297.95 15.07 4.49 4.49 Total: -1.00 -29.86 297.95 -5.00 -34.86 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.96 Total: 3.84 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.74 Total: 3.56 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.04 Total: -43.36 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.86 -5.00 -34.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342550011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.194 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds