Wall clock time and date at job start Tue Mar 31 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47216 * 2 1 4 4 C 1.50701 * 109.47228 * 120.00312 * 2 1 3 5 5 H 1.08003 * 120.00222 * 119.99721 * 4 2 1 6 6 C 1.37874 * 119.99830 * 299.99915 * 4 2 1 7 7 N 1.31512 * 120.00285 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46741 * 89.99698 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99979 * 8 6 4 11 11 H 1.48501 * 109.46770 * 330.00378 * 8 6 4 12 12 C 1.50700 * 109.47112 * 239.99993 * 2 1 3 13 13 O 1.21281 * 120.00401 * 240.00159 * 12 2 1 14 14 N 1.34784 * 119.99492 * 60.00076 * 12 2 1 15 15 C 1.48145 * 127.83336 * 180.02562 * 14 12 2 16 16 C 1.54395 * 104.61454 * 219.58574 * 15 14 12 17 17 H 1.09002 * 110.34481 * 95.00280 * 16 15 14 18 18 C 1.52998 * 110.43060 * 217.21687 * 16 15 14 19 19 F 1.39904 * 109.47152 * 177.06092 * 18 16 15 20 20 F 1.39900 * 109.47330 * 297.06252 * 18 16 15 21 21 F 1.39897 * 109.47282 * 57.06159 * 18 16 15 22 22 C 1.54281 * 104.95731 * 336.13228 * 16 15 14 23 23 H 1.09003 * 110.34267 * 241.12661 * 22 16 15 24 24 N 1.46906 * 110.34335 * 118.87296 * 22 16 15 25 25 C 1.48140 * 127.83889 * 0.02562 * 14 12 2 26 26 H 1.09002 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46902 * 299.99791 * 1 2 3 28 28 H 1.08998 * 109.47047 * 59.99251 * 1 2 3 29 29 H 0.97006 * 120.00316 * 180.02562 * 7 6 4 30 30 H 1.08990 * 110.41068 * 100.80264 * 15 14 12 31 31 H 1.09000 * 110.40585 * 338.36403 * 15 14 12 32 32 H 1.00901 * 111.00126 * 179.97438 * 24 22 16 33 33 H 1.00893 * 110.99833 * 303.95435 * 24 22 16 34 34 H 1.08998 * 110.41105 * 21.63503 * 25 14 12 35 35 H 1.08999 * 110.51120 * 259.24571 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4859 -2.5664 3.7118 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1002 -0.8073 -3.7695 16 6 2.3915 0.4301 -4.6458 17 1 3.4562 0.6630 -4.6308 18 6 1.9206 0.1905 -6.0817 19 9 2.1326 1.3463 -6.8410 20 9 2.6417 -0.8716 -6.6378 21 9 0.5571 -0.1223 -6.0793 22 6 1.5830 1.5745 -4.0001 23 1 0.8492 1.9648 -4.7054 24 7 2.4827 2.6461 -3.5524 25 6 0.8741 0.9286 -2.7903 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7088 1.1611 3.4845 30 1 1.2836 -1.3905 -4.1949 31 1 2.9953 -1.4213 -3.6695 32 1 1.9638 3.4005 -3.1286 33 1 3.1836 2.2892 -2.9205 34 1 0.8440 1.6241 -1.9516 35 1 -0.1348 0.6184 -3.0622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342550011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:36 Heat of formation + Delta-G solvation = -208.049608 kcal Electronic energy + Delta-G solvation = -23142.674646 eV Core-core repulsion = 19145.607372 eV Total energy + Delta-G solvation = -3997.067274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.13676 -48.61879 -48.58496 -41.19760 -38.95799 -35.86663 -34.45936 -33.14199 -31.83709 -28.62221 -27.31967 -26.98017 -24.76091 -23.35453 -21.75020 -20.56827 -19.54474 -19.23592 -18.75772 -18.37990 -17.67241 -16.98426 -16.40733 -16.22098 -15.94575 -15.80683 -15.47413 -15.22287 -15.05464 -15.00295 -14.83905 -14.72629 -14.59273 -14.42388 -13.51228 -13.43118 -13.18603 -13.00054 -12.96572 -12.74524 -12.68649 -12.36111 -12.23973 -12.23208 -12.03155 -11.08405 -10.67278 -10.41644 -10.18771 -9.49534 -8.18057 -6.28248 1.39674 1.41111 1.51543 1.57686 1.78352 2.03142 2.43631 2.70154 2.77346 2.90188 3.12102 3.40688 3.53693 3.73668 3.86991 4.04291 4.12609 4.21862 4.48211 4.61794 4.67779 4.71353 4.75193 4.91413 4.96731 5.20599 5.45559 5.70530 5.90832 6.02014 6.17300 6.43966 6.54293 6.79799 7.32267 7.42216 8.87497 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.035641 B = 0.004464 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.415456 B = 6271.080052 C = 6554.540005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.037 3.963 3 H 0.044 0.956 4 C -0.532 4.532 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.542 3.458 13 O -0.584 6.584 14 N -0.625 5.625 15 C 0.106 3.894 16 C -0.140 4.140 17 H 0.137 0.863 18 C 0.472 3.528 19 F -0.176 7.176 20 F -0.185 7.185 21 F -0.180 7.180 22 C 0.097 3.903 23 H 0.123 0.877 24 N -0.833 5.833 25 C 0.063 3.937 26 H 0.018 0.982 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.266 0.734 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.360 0.640 33 H 0.344 0.656 34 H 0.091 0.909 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 4.803 -16.599 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.016 3.984 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.065 0.935 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.335 3.665 13 O -0.463 6.463 14 N -0.360 5.360 15 C -0.018 4.018 16 C -0.160 4.160 17 H 0.155 0.845 18 C 0.417 3.583 19 F -0.158 7.158 20 F -0.166 7.166 21 F -0.162 7.162 22 C -0.017 4.017 23 H 0.141 0.859 24 N -0.363 5.363 25 C -0.061 4.061 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.176 0.824 33 H 0.157 0.843 34 H 0.109 0.891 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.116 4.440 -17.080 17.683 hybrid contribution -0.053 -0.890 1.667 1.890 sum -1.169 3.551 -15.414 15.861 Atomic orbital electron populations 1.21685 0.95077 0.99376 1.02047 1.18704 0.95243 0.95778 0.88723 0.93855 1.21270 1.31806 1.12843 0.91133 0.93525 1.25534 0.95081 0.95717 1.01247 1.69923 1.36903 1.23450 1.24386 0.85630 0.78463 0.78761 0.79247 1.19925 1.19934 1.20565 1.21424 0.77833 0.83468 0.83812 1.90535 1.40354 1.28802 1.86568 1.49015 1.52189 1.30742 1.04054 1.22243 1.02185 0.94524 0.82815 1.23400 1.05383 0.98292 0.88971 0.84513 1.20087 0.75135 0.73854 0.89210 1.93214 1.94573 1.49530 1.78465 1.93197 1.77984 1.57926 1.87522 1.93188 1.33104 1.92934 1.96937 1.22341 0.93678 0.90060 0.95578 0.85879 1.58953 1.17398 1.11016 1.48951 1.23653 0.95752 0.87916 0.98790 0.96290 0.90948 0.92461 0.92517 0.89501 0.89853 0.82424 0.84307 0.89078 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.72 71.98 0.63 -4.80 16 2 C 0.04 1.76 1.97 -12.28 -0.02 1.74 16 3 H 0.04 2.13 7.95 -2.39 -0.02 2.11 16 4 C -0.53 -30.12 8.37 25.60 0.21 -29.91 16 5 H 0.05 2.85 6.75 -2.91 -0.02 2.83 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -49.22 11.32 21.45 0.24 -48.97 16 8 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 C 0.54 24.14 7.26 87.66 0.64 24.78 16 13 O -0.58 -30.72 15.73 -3.03 -0.05 -30.77 16 14 N -0.63 -20.11 3.31 -807.97 -2.67 -22.79 16 15 C 0.11 2.76 6.36 86.54 0.55 3.31 16 16 C -0.14 -2.80 2.81 -9.89 -0.03 -2.82 16 17 H 0.14 2.65 7.95 -2.39 -0.02 2.63 16 18 C 0.47 9.17 2.52 71.98 0.18 9.35 16 19 F -0.18 -3.51 17.00 44.97 0.76 -2.75 16 20 F -0.18 -3.91 17.14 44.97 0.77 -3.14 16 21 F -0.18 -3.56 16.05 44.97 0.72 -2.84 16 22 C 0.10 1.79 3.49 45.82 0.16 1.95 16 23 H 0.12 1.89 7.40 -2.39 -0.02 1.87 16 24 N -0.83 -15.03 9.16 -164.92 -1.51 -16.55 16 25 C 0.06 1.49 4.95 86.53 0.43 1.92 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 3.51 6.07 -2.38 -0.01 3.49 16 28 H 0.06 1.98 5.35 -2.39 -0.01 1.97 16 29 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 30 H 0.09 2.10 7.27 -2.39 -0.02 2.08 16 31 H 0.08 2.41 7.88 -2.39 -0.02 2.39 16 32 H 0.36 5.46 9.08 -89.69 -0.81 4.65 16 33 H 0.34 7.09 8.98 -89.70 -0.81 6.29 16 34 H 0.09 2.26 6.48 -2.39 -0.02 2.25 16 35 H 0.09 1.94 8.01 -2.39 -0.02 1.92 16 Total: -1.00 -64.77 297.95 3.03 -61.74 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -0.46 Total: 12.72 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 3.20 Total: 7.27 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -3.94 Total: -88.31 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.05 Total: -30.77 kcal Atomic # 9 Polarization: -10.97 SS G_CDS: 2.26 Total: -8.72 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.77 3.03 -61.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342550011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.309 kcal (2) G-P(sol) polarization free energy of solvation -64.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds