Wall clock time and date at job start Tue Mar 31 2020 02:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47210 * 2 1 4 4 C 1.35589 * 125.68425 * 45.05520 * 3 2 1 5 5 C 1.35475 * 108.88796 * 179.97438 * 4 3 2 6 6 C 1.39809 * 107.87966 * 359.97438 * 5 4 3 7 7 C 1.37678 * 125.68553 * 225.04885 * 3 2 1 8 8 C 1.46551 * 126.23600 * 359.74278 * 7 3 2 9 9 O 1.21742 * 119.99843 * 95.60115 * 8 7 3 10 10 N 1.34774 * 119.99971 * 275.59211 * 8 7 3 11 11 C 1.36872 * 119.99637 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00240 * 236.74899 * 11 10 8 13 13 C 1.39009 * 119.99950 * 56.76274 * 11 10 8 14 14 N 1.31395 * 120.00435 * 41.51412 * 13 11 10 15 15 Si 1.86807 * 119.99854 * 221.52009 * 13 11 10 16 16 H 1.48496 * 109.47005 * 94.99704 * 15 13 11 17 17 H 1.48500 * 109.46885 * 214.99971 * 15 13 11 18 18 H 1.48505 * 109.46799 * 334.99795 * 15 13 11 19 19 C 1.46499 * 119.99966 * 359.97438 * 10 8 7 20 20 C 1.50702 * 109.47156 * 143.64708 * 19 10 8 21 21 O 1.20820 * 119.99859 * 357.79826 * 20 19 10 22 22 O 1.34229 * 119.99999 * 177.79291 * 20 19 10 23 23 C 1.45198 * 116.99892 * 180.02562 * 22 20 19 24 24 H 1.08994 * 109.47067 * 192.37896 * 1 2 3 25 25 H 1.09008 * 109.46769 * 312.37675 * 1 2 3 26 26 H 1.08994 * 109.47401 * 72.37612 * 1 2 3 27 27 H 1.09002 * 109.47080 * 240.00556 * 2 1 3 28 28 H 1.09001 * 109.47683 * 120.00741 * 2 1 3 29 29 H 1.08000 * 125.55301 * 359.97438 * 4 3 2 30 30 H 1.07996 * 126.06626 * 179.97438 * 5 4 3 31 31 H 1.07997 * 126.45929 * 180.02562 * 6 5 4 32 32 H 0.96995 * 120.00301 * 184.97163 * 14 13 11 33 33 H 1.09006 * 109.47046 * 263.64535 * 19 10 8 34 34 H 1.08996 * 109.47519 * 23.64743 * 19 10 8 35 35 H 1.09001 * 109.46608 * 299.99830 * 23 22 20 36 36 H 1.08997 * 109.47566 * 59.99501 * 23 22 20 37 37 H 1.08997 * 109.46987 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.5485 2.3862 0.7795 5 6 2.2419 3.5167 0.5028 6 6 3.1824 3.2122 -0.4859 7 6 3.0309 1.8750 -0.7914 8 6 3.8108 1.1169 -1.7736 9 8 3.4889 1.1301 -2.9476 10 7 4.8846 0.4053 -1.3772 11 6 5.6126 -0.3032 -2.2945 12 1 5.7571 -1.3656 -2.1651 13 6 6.1664 0.3449 -3.3926 14 7 6.7289 1.5232 -3.2453 15 14 6.1106 -0.4594 -5.0777 16 1 4.9291 0.0402 -5.8257 17 1 7.3485 -0.1251 -5.8269 18 1 6.0101 -1.9326 -4.9200 19 6 5.2724 0.3901 0.0354 20 6 5.7910 -0.9773 0.3993 21 8 5.7953 -1.8608 -0.4249 22 8 6.2482 -1.2137 1.6390 23 6 6.7329 -2.5536 1.9184 24 1 -0.3633 -1.0037 0.2203 25 1 -0.3633 0.6927 0.7592 26 1 -0.3634 0.3111 -0.9794 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.7514 2.2996 1.5030 30 1 2.0945 4.4819 0.9641 31 1 3.8930 3.8949 -0.9277 32 1 7.0506 2.0075 -4.0217 33 1 6.0527 1.1318 0.2060 34 1 4.4056 0.6260 0.6528 35 1 5.9277 -3.2713 1.7614 36 1 7.5625 -2.7865 1.2509 37 1 7.0718 -2.6089 2.9529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346610574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:52 Heat of formation + Delta-G solvation = -39.963771 kcal Electronic energy + Delta-G solvation = -22864.285609 eV Core-core repulsion = 19416.363824 eV Total energy + Delta-G solvation = -3447.921785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87682 -39.86042 -37.89830 -35.96390 -34.12018 -33.93131 -32.05739 -29.20871 -28.63210 -28.50065 -26.37202 -24.72595 -23.40501 -21.49509 -20.62665 -19.89275 -18.65929 -17.66064 -16.88130 -16.71265 -16.02057 -15.31912 -15.23530 -14.89902 -14.83450 -13.97813 -13.86259 -13.57909 -13.20947 -13.04703 -12.89639 -12.51423 -12.17590 -11.99614 -11.80569 -11.72619 -11.67551 -11.66626 -11.34484 -11.12900 -10.91783 -10.60857 -10.31907 -10.15054 -9.43695 -8.73617 -8.39062 -8.26876 -7.57638 -7.27887 -6.28835 -3.95849 2.50746 2.88021 2.96785 3.20847 3.38168 3.41250 3.49768 3.55745 3.96615 4.38510 4.81405 4.83265 5.02096 5.07918 5.25924 5.32957 5.34362 5.40072 5.44697 5.63072 5.65458 5.71580 5.76140 5.80578 5.96195 6.00361 6.09142 6.18218 6.66801 6.72041 6.82692 7.38751 7.55337 7.70783 7.74084 8.20022 8.55983 8.86879 9.11787 9.45814 10.02034 10.70829 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.008533 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.351796 B = 3280.635559 C = 4513.281618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.425 5.425 4 C -0.019 4.019 5 C -0.202 4.202 6 C -0.163 4.163 7 C -0.006 4.006 8 C 0.551 3.449 9 O -0.538 6.538 10 N -0.421 5.421 11 C -0.380 4.380 12 H 0.119 0.881 13 C 0.097 3.903 14 N -0.824 5.824 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.292 1.292 18 H -0.269 1.269 19 C 0.111 3.889 20 C 0.450 3.550 21 O -0.470 6.470 22 O -0.373 6.373 23 C 0.038 3.962 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.266 0.734 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -2.134 12.571 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.101 5.101 4 C -0.151 4.151 5 C -0.227 4.227 6 C -0.188 4.188 7 C -0.121 4.121 8 C 0.338 3.662 9 O -0.416 6.416 10 N -0.144 5.144 11 C -0.504 4.504 12 H 0.135 0.865 13 C -0.116 4.116 14 N -0.455 5.455 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.219 1.219 18 H -0.193 1.193 19 C -0.013 4.013 20 C 0.291 3.709 21 O -0.354 6.354 22 O -0.290 6.290 23 C -0.056 4.056 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.175 0.825 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.709 -2.698 11.645 13.708 hybrid contribution 0.181 -0.220 -0.714 0.769 sum -6.529 -2.919 10.931 13.062 Atomic orbital electron populations 1.22083 0.93872 1.02829 1.03288 1.21868 0.95712 0.80808 1.04228 1.44159 1.27517 1.08677 1.29784 1.21594 1.04131 0.88126 1.01235 1.20666 1.00906 0.97880 1.03248 1.21162 1.02826 0.93463 1.01386 1.21023 0.96268 0.95165 0.99636 1.17044 0.80421 0.81838 0.86941 1.90702 1.69959 1.63115 1.17825 1.43059 1.23674 1.44406 1.03260 1.19714 1.34355 0.93374 1.02958 0.86456 1.25448 0.90443 0.95290 1.00427 1.70282 1.28029 1.15932 1.31220 0.86568 0.77339 0.80493 0.83955 1.19743 1.21876 1.19319 1.21037 1.00913 0.90302 0.89078 1.24277 0.75244 0.92055 0.79301 1.90601 1.50532 1.46475 1.47746 1.86510 1.74346 1.34201 1.33973 1.23095 0.99379 0.81676 1.01447 0.90806 0.91702 0.91606 0.88609 0.90323 0.82538 0.84885 0.84518 0.92401 0.88795 0.89109 0.92514 0.92146 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.96 37.16 0.37 -1.41 16 2 C 0.10 1.36 7.00 -4.04 -0.03 1.33 16 3 N -0.42 -7.15 2.82 -112.85 -0.32 -7.47 16 4 C -0.02 -0.28 10.48 -16.88 -0.18 -0.46 16 5 C -0.20 -3.17 10.81 -39.98 -0.43 -3.60 16 6 C -0.16 -3.17 10.87 -39.08 -0.43 -3.59 16 7 C -0.01 -0.14 4.72 -81.98 -0.39 -0.52 16 8 C 0.55 14.09 6.50 -12.91 -0.08 14.00 16 9 O -0.54 -15.93 16.30 5.15 0.08 -15.84 16 10 N -0.42 -10.68 2.78 -117.63 -0.33 -11.01 16 11 C -0.38 -10.74 7.48 -15.02 -0.11 -10.85 16 12 H 0.12 3.43 5.40 -52.50 -0.28 3.15 16 13 C 0.10 2.80 4.18 -17.45 -0.07 2.72 16 14 N -0.82 -24.05 13.88 55.50 0.77 -23.28 16 15 Si 0.89 22.90 29.69 -169.99 -5.05 17.85 16 16 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.11 2.31 6.35 -5.19 -0.03 2.28 16 20 C 0.45 9.12 7.80 36.01 0.28 9.40 16 21 O -0.47 -10.89 12.80 -18.75 -0.24 -11.13 16 22 O -0.37 -6.25 10.57 -39.25 -0.41 -6.67 16 23 C 0.04 0.49 10.56 101.05 1.07 1.56 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.62 6.80 -51.92 -0.35 0.27 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.10 1.63 7.46 -51.93 -0.39 1.24 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.16 1.68 7.33 -52.49 -0.38 1.29 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 32 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 33 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 34 H 0.09 1.68 6.49 -51.93 -0.34 1.34 16 35 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 36 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -34.86 321.75 -5.36 -40.22 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.69 Total: 1.61 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.03 Total: 10.86 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.13 Total: -41.75 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.57 Total: -33.64 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.05 Total: 17.85 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.86 -5.36 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346610574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.254 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds