Wall clock time and date at job start Tue Mar 31 2020 02:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47210 * 2 1 4 4 C 1.35589 * 125.68425 * 45.05520 * 3 2 1 5 5 C 1.35475 * 108.88796 * 179.97438 * 4 3 2 6 6 C 1.39809 * 107.87966 * 359.97438 * 5 4 3 7 7 C 1.37678 * 125.68553 * 225.04885 * 3 2 1 8 8 C 1.46551 * 126.23600 * 359.74278 * 7 3 2 9 9 O 1.21742 * 119.99843 * 95.60115 * 8 7 3 10 10 N 1.34774 * 119.99971 * 275.59211 * 8 7 3 11 11 C 1.36872 * 119.99637 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00240 * 236.74899 * 11 10 8 13 13 C 1.39009 * 119.99950 * 56.76274 * 11 10 8 14 14 N 1.31395 * 120.00435 * 41.51412 * 13 11 10 15 15 Si 1.86807 * 119.99854 * 221.52009 * 13 11 10 16 16 H 1.48496 * 109.47005 * 94.99704 * 15 13 11 17 17 H 1.48500 * 109.46885 * 214.99971 * 15 13 11 18 18 H 1.48505 * 109.46799 * 334.99795 * 15 13 11 19 19 C 1.46499 * 119.99966 * 359.97438 * 10 8 7 20 20 C 1.50702 * 109.47156 * 143.64708 * 19 10 8 21 21 O 1.20820 * 119.99859 * 357.79826 * 20 19 10 22 22 O 1.34229 * 119.99999 * 177.79291 * 20 19 10 23 23 C 1.45198 * 116.99892 * 180.02562 * 22 20 19 24 24 H 1.08994 * 109.47067 * 192.37896 * 1 2 3 25 25 H 1.09008 * 109.46769 * 312.37675 * 1 2 3 26 26 H 1.08994 * 109.47401 * 72.37612 * 1 2 3 27 27 H 1.09002 * 109.47080 * 240.00556 * 2 1 3 28 28 H 1.09001 * 109.47683 * 120.00741 * 2 1 3 29 29 H 1.08000 * 125.55301 * 359.97438 * 4 3 2 30 30 H 1.07996 * 126.06626 * 179.97438 * 5 4 3 31 31 H 1.07997 * 126.45929 * 180.02562 * 6 5 4 32 32 H 0.96995 * 120.00301 * 184.97163 * 14 13 11 33 33 H 1.09006 * 109.47046 * 263.64535 * 19 10 8 34 34 H 1.08996 * 109.47519 * 23.64743 * 19 10 8 35 35 H 1.09001 * 109.46608 * 299.99830 * 23 22 20 36 36 H 1.08997 * 109.47566 * 59.99501 * 23 22 20 37 37 H 1.08997 * 109.46987 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.5485 2.3862 0.7795 5 6 2.2419 3.5167 0.5028 6 6 3.1824 3.2122 -0.4859 7 6 3.0309 1.8750 -0.7914 8 6 3.8108 1.1169 -1.7736 9 8 3.4889 1.1301 -2.9476 10 7 4.8846 0.4053 -1.3772 11 6 5.6126 -0.3032 -2.2945 12 1 5.7571 -1.3656 -2.1651 13 6 6.1664 0.3449 -3.3926 14 7 6.7289 1.5232 -3.2453 15 14 6.1106 -0.4594 -5.0777 16 1 4.9291 0.0402 -5.8257 17 1 7.3485 -0.1251 -5.8269 18 1 6.0101 -1.9326 -4.9200 19 6 5.2724 0.3901 0.0354 20 6 5.7910 -0.9773 0.3993 21 8 5.7953 -1.8608 -0.4249 22 8 6.2482 -1.2137 1.6390 23 6 6.7329 -2.5536 1.9184 24 1 -0.3633 -1.0037 0.2203 25 1 -0.3633 0.6927 0.7592 26 1 -0.3634 0.3111 -0.9794 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.7514 2.2996 1.5030 30 1 2.0945 4.4819 0.9641 31 1 3.8930 3.8949 -0.9277 32 1 7.0506 2.0075 -4.0217 33 1 6.0527 1.1318 0.2060 34 1 4.4056 0.6260 0.6528 35 1 5.9277 -3.2713 1.7614 36 1 7.5625 -2.7865 1.2509 37 1 7.0718 -2.6089 2.9529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346610574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:52 Heat of formation + Delta-G solvation = -63.038594 kcal Electronic energy + Delta-G solvation = -22865.286208 eV Core-core repulsion = 19416.363824 eV Total energy + Delta-G solvation = -3448.922384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28969 -41.41706 -39.75440 -37.56705 -36.09039 -35.07717 -34.15712 -30.48272 -30.15232 -29.94170 -27.81284 -26.61189 -24.51869 -23.22372 -22.20476 -21.23527 -20.33771 -19.23524 -18.54787 -18.28033 -17.54695 -17.03936 -16.84670 -16.54374 -16.26269 -15.84075 -15.55023 -14.86770 -14.54629 -14.47301 -14.44042 -14.19932 -13.75108 -13.53117 -13.26104 -13.08351 -12.96802 -12.94935 -12.86647 -12.74292 -12.61685 -12.17916 -12.16907 -11.71330 -11.25311 -10.78502 -10.52625 -9.57159 -9.37834 -8.94072 -8.43854 -6.14097 1.11194 1.26750 1.27812 1.39978 1.44426 1.50094 1.79628 2.09143 2.14484 2.41990 2.89572 3.07070 3.74923 3.84244 4.03269 4.06688 4.12954 4.28935 4.34740 4.36302 4.37839 4.47630 4.56999 4.69862 4.72411 4.83120 4.87466 5.15140 5.27017 5.35169 5.41104 5.62069 6.01580 6.11519 6.25053 6.53665 6.82181 6.88716 7.03092 7.37154 7.98329 8.54159 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.008533 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.351796 B = 3280.635559 C = 4513.281618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.089 3.911 3 N -0.422 5.422 4 C 0.014 3.986 5 C -0.208 4.208 6 C -0.172 4.172 7 C -0.054 4.054 8 C 0.550 3.450 9 O -0.596 6.596 10 N -0.433 5.433 11 C -0.389 4.389 12 H 0.106 0.894 13 C 0.056 3.944 14 N -0.853 5.853 15 Si 0.936 3.064 16 H -0.291 1.291 17 H -0.274 1.274 18 H -0.261 1.261 19 C 0.115 3.885 20 C 0.458 3.542 21 O -0.505 6.505 22 O -0.364 6.364 23 C 0.030 3.970 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.210 0.790 30 H 0.166 0.834 31 H 0.120 0.880 32 H 0.267 0.733 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 -2.275 15.805 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 N -0.098 5.098 4 C -0.119 4.119 5 C -0.231 4.231 6 C -0.198 4.198 7 C -0.168 4.168 8 C 0.339 3.661 9 O -0.478 6.478 10 N -0.154 5.154 11 C -0.514 4.514 12 H 0.123 0.877 13 C -0.154 4.154 14 N -0.486 5.486 15 Si 0.761 3.239 16 H -0.218 1.218 17 H -0.200 1.200 18 H -0.185 1.185 19 C -0.009 4.009 20 C 0.301 3.699 21 O -0.392 6.392 22 O -0.281 6.281 23 C -0.063 4.063 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.227 0.773 30 H 0.183 0.817 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.274 -2.866 14.924 17.303 hybrid contribution 0.617 -0.215 -1.529 1.662 sum -7.657 -3.080 13.395 15.733 Atomic orbital electron populations 1.22069 0.90821 1.05079 1.03142 1.22083 0.98138 0.79489 1.03468 1.44342 1.26301 1.10058 1.29107 1.22425 1.03281 0.86458 0.99697 1.21000 0.99876 0.99920 1.02316 1.21290 1.03510 0.92637 1.02349 1.20326 0.99071 0.95531 1.01829 1.17660 0.80314 0.81008 0.87148 1.90633 1.71419 1.65126 1.20616 1.43144 1.23495 1.44043 1.04753 1.19703 1.34071 0.93316 1.04356 0.87708 1.26070 0.90593 0.95967 1.02769 1.70295 1.29466 1.17094 1.31718 0.85862 0.77042 0.80053 0.80988 1.21808 1.19981 1.18526 1.21017 1.02013 0.91143 0.86709 1.23991 0.74715 0.91221 0.80013 1.90585 1.52109 1.47383 1.49123 1.86477 1.73603 1.36509 1.31466 1.23514 0.99256 0.79631 1.03874 0.88346 0.89122 0.93423 0.92581 0.87852 0.77326 0.81663 0.86181 0.92313 0.88803 0.86469 0.91978 0.92911 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.96 71.98 0.72 -2.13 16 2 C 0.09 2.38 7.00 86.38 0.60 2.98 16 3 N -0.42 -13.32 2.82 -510.96 -1.44 -14.76 16 4 C 0.01 0.34 10.48 83.47 0.87 1.21 16 5 C -0.21 -5.81 10.81 22.01 0.24 -5.57 16 6 C -0.17 -6.60 10.87 22.59 0.25 -6.35 16 7 C -0.05 -2.26 4.72 40.34 0.19 -2.07 16 8 C 0.55 29.31 6.50 86.41 0.56 29.87 16 9 O -0.60 -37.31 16.30 -4.48 -0.07 -37.38 16 10 N -0.43 -22.73 2.78 -644.25 -1.79 -24.53 16 11 C -0.39 -22.90 7.48 84.09 0.63 -22.27 16 12 H 0.11 6.39 5.40 -3.05 -0.02 6.37 16 13 C 0.06 3.34 4.18 84.94 0.36 3.70 16 14 N -0.85 -51.69 13.88 21.67 0.30 -51.39 16 15 Si 0.94 48.70 29.69 68.60 2.04 50.74 16 16 H -0.29 -15.97 7.11 99.48 0.71 -15.26 16 17 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 18 H -0.26 -13.10 7.11 99.48 0.71 -12.40 16 19 C 0.11 4.83 6.35 85.63 0.54 5.37 16 20 C 0.46 18.47 7.80 71.24 0.56 19.02 16 21 O -0.51 -23.82 12.80 21.98 0.28 -23.53 16 22 O -0.36 -11.55 10.57 -51.40 -0.54 -12.09 16 23 C 0.03 0.71 10.56 113.37 1.20 1.91 16 24 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.23 6.80 -2.38 -0.02 1.21 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.95 7.46 -2.39 -0.02 1.93 16 28 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.21 2.90 7.33 -2.91 -0.02 2.88 16 30 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.27 15.38 8.32 -92.71 -0.77 14.61 16 33 H 0.09 3.94 8.14 -2.38 -0.02 3.92 16 34 H 0.12 4.24 6.49 -2.39 -0.02 4.22 16 35 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 37 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -81.31 321.75 6.56 -74.75 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.08 Total: 12.54 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.71 Total: 25.66 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.93 Total: -90.67 kcal Atomic # 8 Polarization: -72.67 SS G_CDS: -0.33 Total: -73.01 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.04 Total: 50.74 kcal Total: -81.31 6.56 -74.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346610574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.708 kcal (2) G-P(sol) polarization free energy of solvation -81.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds