Wall clock time and date at job start Tue Mar 31 2020 01:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47241 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47303 * 119.99759 * 10 8 6 13 13 H 1.48495 * 109.47340 * 239.99921 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 4 18 18 C 1.33874 * 122.76372 * 269.70712 * 17 16 14 19 19 O 1.21223 * 125.39701 * 359.97438 * 18 17 16 20 20 C 1.51319 * 109.20556 * 179.84581 * 18 17 16 21 21 C 1.54227 * 103.55681 * 0.38362 * 20 18 17 22 22 C 1.33875 * 122.76205 * 90.00148 * 17 16 14 23 23 O 1.21230 * 125.39509 * 359.97386 * 22 17 16 24 24 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 28 28 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 29 29 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 30 30 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 31 31 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 33 33 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 34 34 H 1.09005 * 110.79549 * 241.78131 * 20 18 17 35 35 H 1.09000 * 110.55084 * 118.87747 * 20 18 17 36 36 H 1.08996 * 110.60810 * 241.26059 * 21 20 18 37 37 H 1.09000 * 110.60186 * 118.29412 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 3.5006 6.3308 2.4023 12 1 1.6011 6.6415 3.8778 13 1 3.7947 6.1843 4.8046 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 7 6.0918 -0.1200 -0.2520 18 6 7.1253 0.6887 -0.5170 19 8 7.0396 1.8483 -0.8597 20 6 8.4173 -0.0734 -0.3180 21 6 7.9461 -1.4803 0.1029 22 6 6.4375 -1.3637 0.1028 23 8 5.6643 -2.2552 0.3806 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4889 1.6967 2.5459 30 1 3.0991 1.3604 3.2259 31 1 1.7288 3.9749 5.4286 32 1 4.0680 -0.5285 -0.6228 33 1 4.6125 1.0952 -1.1083 34 1 9.0176 0.3817 0.4699 35 1 8.9812 -0.1204 -1.2496 36 1 8.3120 -1.7251 1.1000 37 1 8.2732 -2.2268 -0.6208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346848561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:17 Heat of formation + Delta-G solvation = -70.090606 kcal Electronic energy + Delta-G solvation = -22261.082831 eV Core-core repulsion = 18811.854648 eV Total energy + Delta-G solvation = -3449.228182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88680 -38.97535 -38.51205 -35.89128 -35.63223 -33.56237 -33.09046 -32.09575 -28.81388 -26.88065 -26.23844 -25.41127 -22.87026 -22.39776 -20.22236 -19.70294 -18.58346 -17.44382 -17.11880 -16.55986 -16.38736 -16.07487 -15.46456 -14.77931 -14.62689 -14.40497 -14.18385 -14.11023 -13.94683 -13.67581 -13.16796 -12.86647 -12.60726 -12.45044 -11.85358 -11.72001 -11.51500 -11.30177 -11.05639 -10.88132 -10.70626 -10.59762 -10.22418 -10.14514 -10.04067 -9.63770 -9.22105 -8.90955 -8.44066 -7.76836 -6.04805 -4.09547 1.53939 2.33751 2.47188 2.76595 3.23482 3.30196 3.37961 3.43471 3.92489 3.99553 4.14076 4.32207 4.44930 4.68975 4.92287 5.08413 5.17429 5.25548 5.28173 5.29716 5.38857 5.41104 5.44606 5.47898 5.60578 5.98743 6.15522 6.77747 6.81305 6.87443 7.02318 7.32290 7.41085 7.48575 7.75943 7.91457 8.21527 8.29193 8.83228 8.99127 9.55486 11.03448 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.005812 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.214573 B = 4816.681290 C = 5887.370787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.133 3.867 4 N -0.587 5.587 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.076 3.924 17 N -0.556 5.556 18 C 0.530 3.470 19 O -0.478 6.478 20 C -0.154 4.154 21 C -0.154 4.154 22 C 0.531 3.469 23 O -0.483 6.483 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -10.076 -13.731 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C 0.009 3.991 4 N -0.319 5.319 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.281 3.719 15 O -0.409 6.409 16 C -0.049 4.049 17 N -0.299 5.299 18 C 0.318 3.682 19 O -0.349 6.349 20 C -0.193 4.193 21 C -0.193 4.193 22 C 0.320 3.680 23 O -0.355 6.355 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.390 -9.846 -13.061 17.948 hybrid contribution -0.090 1.052 0.210 1.076 sum 7.301 -8.794 -12.851 17.198 Atomic orbital electron populations 1.23828 0.95781 1.01844 1.00117 1.23426 0.96534 0.98909 1.00297 1.20652 0.93283 0.95730 0.89414 1.48186 1.10008 1.59745 1.13927 1.19321 0.95510 0.93842 0.78419 1.21467 1.40472 0.93201 1.01381 0.92328 1.24931 0.95016 0.98835 0.95292 1.69949 1.42061 1.36111 1.05210 0.86440 0.77915 0.84884 0.78206 1.19721 1.20913 1.20870 1.20324 0.83032 0.79186 0.89339 1.90680 1.52548 1.56197 1.41455 1.21751 0.81430 1.02698 0.98975 1.46300 1.08466 1.13880 1.61224 1.20781 0.86678 0.85979 0.74716 1.90790 1.86483 1.14674 1.42909 1.22438 0.96282 0.94649 1.05978 1.22438 0.91853 0.98552 1.06483 1.20776 0.92195 0.80962 0.74047 1.90766 1.58500 1.41901 1.44303 0.88673 0.88205 0.87648 0.88986 0.90860 0.94687 0.93887 0.92758 0.86592 0.86465 0.86002 0.86305 0.86044 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.90 16 2 C -0.17 -2.48 9.74 -36.03 -0.35 -2.83 16 3 C 0.13 2.17 5.65 -5.20 -0.03 2.14 16 4 N -0.59 -12.70 2.44 -176.44 -0.43 -13.13 16 5 C 0.25 6.62 5.16 -5.19 -0.03 6.59 16 6 C -0.53 -15.20 9.39 -34.44 -0.32 -15.53 16 7 H 0.06 1.71 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 10 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 14 C 0.50 10.72 7.74 -10.98 -0.09 10.63 16 15 O -0.53 -13.80 16.01 5.56 0.09 -13.71 16 16 C 0.08 1.21 4.59 -5.19 -0.02 1.19 16 17 N -0.56 -8.27 2.04 -116.62 -0.24 -8.51 16 18 C 0.53 7.45 8.08 -11.08 -0.09 7.36 16 19 O -0.48 -8.48 17.47 5.61 0.10 -8.38 16 20 C -0.15 -1.25 7.03 -26.94 -0.19 -1.43 16 21 C -0.15 -1.21 7.03 -26.94 -0.19 -1.40 16 22 C 0.53 7.22 8.08 -11.09 -0.09 7.13 16 23 O -0.48 -8.10 17.48 5.60 0.10 -8.00 16 24 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 25 H 0.10 1.27 7.84 -52.49 -0.41 0.85 16 26 H 0.11 1.47 7.83 -52.49 -0.41 1.05 16 27 H 0.09 1.55 7.72 -51.93 -0.40 1.14 16 28 H 0.07 0.97 6.44 -51.93 -0.33 0.64 16 29 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.12 1.58 7.46 -51.93 -0.39 1.19 16 33 H 0.12 1.66 7.08 -51.93 -0.37 1.29 16 34 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -38.00 328.46 -5.57 -43.57 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.78 Total: -1.47 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -1.08 Total: 13.64 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.07 Total: -47.87 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: 0.28 Total: -30.09 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -38.00 -5.57 -43.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346848561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.516 kcal (2) G-P(sol) polarization free energy of solvation -38.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds