Wall clock time and date at job start Tue Mar 31 2020 01:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47241 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47303 * 119.99759 * 10 8 6 13 13 H 1.48495 * 109.47340 * 239.99921 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 4 18 18 C 1.33874 * 122.76372 * 269.70712 * 17 16 14 19 19 O 1.21223 * 125.39701 * 359.97438 * 18 17 16 20 20 C 1.51319 * 109.20556 * 179.84581 * 18 17 16 21 21 C 1.54227 * 103.55681 * 0.38362 * 20 18 17 22 22 C 1.33875 * 122.76205 * 90.00148 * 17 16 14 23 23 O 1.21230 * 125.39509 * 359.97386 * 22 17 16 24 24 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 28 28 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 29 29 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 30 30 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 31 31 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 33 33 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 34 34 H 1.09005 * 110.79549 * 241.78131 * 20 18 17 35 35 H 1.09000 * 110.55084 * 118.87747 * 20 18 17 36 36 H 1.08996 * 110.60810 * 241.26059 * 21 20 18 37 37 H 1.09000 * 110.60186 * 118.29412 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 3.5006 6.3308 2.4023 12 1 1.6011 6.6415 3.8778 13 1 3.7947 6.1843 4.8046 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 7 6.0918 -0.1200 -0.2520 18 6 7.1253 0.6887 -0.5170 19 8 7.0396 1.8483 -0.8597 20 6 8.4173 -0.0734 -0.3180 21 6 7.9461 -1.4803 0.1029 22 6 6.4375 -1.3637 0.1028 23 8 5.6643 -2.2552 0.3806 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4889 1.6967 2.5459 30 1 3.0991 1.3604 3.2259 31 1 1.7288 3.9749 5.4286 32 1 4.0680 -0.5285 -0.6228 33 1 4.6125 1.0952 -1.1083 34 1 9.0176 0.3817 0.4699 35 1 8.9812 -0.1204 -1.2496 36 1 8.3120 -1.7251 1.1000 37 1 8.2732 -2.2268 -0.6208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346848561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:16 Heat of formation + Delta-G solvation = -97.405973 kcal Electronic energy + Delta-G solvation = -22262.267314 eV Core-core repulsion = 18811.854648 eV Total energy + Delta-G solvation = -3450.412666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.96313 -40.63706 -39.65776 -37.39508 -36.89334 -35.24378 -34.33875 -33.75574 -30.47540 -28.47331 -27.11139 -26.95926 -24.86280 -23.32721 -21.57275 -20.86169 -19.99580 -18.81203 -18.55504 -18.39981 -17.52789 -17.39243 -17.07524 -16.34280 -16.22044 -15.70833 -15.56929 -15.28182 -14.94363 -14.74946 -14.55245 -14.33136 -14.12809 -13.56923 -13.44408 -13.33299 -13.07321 -12.89674 -12.65633 -12.31404 -12.24881 -12.09471 -11.75649 -11.71869 -11.53698 -11.12067 -10.70353 -10.54696 -10.37416 -9.60651 -8.28118 -6.43081 0.50340 1.18769 1.32433 1.34762 1.38097 1.47099 1.58972 1.74953 2.29664 2.43458 3.01650 3.21308 3.25882 3.47113 3.65108 3.91278 3.93469 4.06349 4.18724 4.20230 4.25271 4.37601 4.75155 4.77716 4.90950 4.91732 4.92808 5.01006 5.13375 5.42550 5.66875 5.69098 5.77241 5.87658 5.98841 6.30228 6.51417 6.66330 6.71095 7.14882 7.30860 8.79757 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.005812 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.214573 B = 4816.681290 C = 5887.370787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.190 4.190 3 C 0.129 3.871 4 N -0.593 5.593 5 C 0.266 3.734 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.270 1.270 12 H -0.265 1.265 13 H -0.280 1.280 14 C 0.485 3.515 15 O -0.588 6.588 16 C 0.085 3.915 17 N -0.568 5.568 18 C 0.517 3.483 19 O -0.525 6.525 20 C -0.138 4.138 21 C -0.137 4.137 22 C 0.519 3.481 23 O -0.524 6.524 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.026 0.974 30 H -0.006 1.006 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.162 0.838 36 H 0.136 0.864 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 -10.380 -15.531 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.007 3.993 4 N -0.323 5.323 5 C 0.145 3.855 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.194 1.194 12 H -0.190 1.190 13 H -0.206 1.206 14 C 0.272 3.728 15 O -0.469 6.469 16 C -0.040 4.040 17 N -0.310 5.310 18 C 0.309 3.691 19 O -0.400 6.400 20 C -0.176 4.176 21 C -0.175 4.175 22 C 0.312 3.688 23 O -0.398 6.398 24 H 0.136 0.864 25 H 0.120 0.880 26 H 0.129 0.871 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.179 0.821 36 H 0.154 0.846 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.559 -10.177 -14.908 19.976 hybrid contribution -0.531 1.104 0.784 1.454 sum 8.027 -9.073 -14.124 18.608 Atomic orbital electron populations 1.24073 0.95360 1.03071 0.97484 1.23289 0.96986 0.97966 1.02623 1.20926 0.92867 0.96791 0.88693 1.48187 1.11301 1.59231 1.13588 1.18729 0.94023 0.92764 0.80024 1.21684 1.40765 0.94265 1.01516 0.93105 1.25851 0.94517 1.03860 0.94739 1.70060 1.42632 1.38129 1.05818 0.85363 0.78394 0.78905 0.78130 1.19400 1.18980 1.20596 1.21354 0.82260 0.78209 0.90950 1.90629 1.53986 1.58426 1.43829 1.21662 0.83247 1.03795 0.95314 1.46674 1.08096 1.14854 1.61349 1.21931 0.88430 0.85604 0.73086 1.90758 1.87314 1.16748 1.45141 1.22600 0.93222 0.93317 1.08495 1.22602 0.86752 0.99553 1.08627 1.21888 0.94687 0.79800 0.72459 1.90740 1.60180 1.42877 1.46004 0.86430 0.87972 0.87114 0.89754 0.87587 0.95622 0.98742 0.92273 0.84332 0.84717 0.84696 0.82059 0.84596 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 14.32 67.77 0.97 -3.02 16 2 C -0.19 -5.32 9.74 25.64 0.25 -5.07 16 3 C 0.13 4.21 5.65 85.63 0.48 4.70 16 4 N -0.59 -26.60 2.44 -830.51 -2.03 -28.63 16 5 C 0.27 14.97 5.16 85.64 0.44 15.41 16 6 C -0.54 -32.50 9.39 25.60 0.24 -32.26 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.56 5.46 84.65 0.46 1.03 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 10 Si 0.97 46.21 29.54 68.60 2.03 48.24 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 14 C 0.48 21.69 7.74 87.66 0.68 22.37 16 15 O -0.59 -32.11 16.01 -3.03 -0.05 -32.16 16 16 C 0.09 2.69 4.59 85.63 0.39 3.08 16 17 N -0.57 -16.49 2.04 -760.72 -1.55 -18.05 16 18 C 0.52 13.95 8.08 87.99 0.71 14.66 16 19 O -0.53 -18.60 17.47 -2.85 -0.05 -18.65 16 20 C -0.14 -1.73 7.03 30.46 0.21 -1.52 16 21 C -0.14 -1.65 7.03 30.46 0.21 -1.44 16 22 C 0.52 13.46 8.08 87.99 0.71 14.17 16 23 O -0.52 -17.38 17.48 -2.88 -0.05 -17.43 16 24 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 25 H 0.10 2.46 7.84 -2.91 -0.02 2.44 16 26 H 0.11 3.00 7.83 -2.91 -0.02 2.97 16 27 H 0.08 2.86 7.72 -2.38 -0.02 2.84 16 28 H 0.11 2.71 6.44 -2.39 -0.02 2.69 16 29 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 30 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 31 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.14 3.69 7.46 -2.39 -0.02 3.67 16 33 H 0.14 3.73 7.08 -2.39 -0.02 3.71 16 34 H 0.14 1.47 8.14 -2.38 -0.02 1.46 16 35 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -88.93 328.46 5.43 -83.50 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.08 Total: 8.05 kcal Atomic # 6 Polarization: 26.34 SS G_CDS: 5.77 Total: 32.11 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -3.29 Total: -103.66 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -0.15 Total: -68.24 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -88.93 5.43 -83.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346848561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.908 kcal (2) G-P(sol) polarization free energy of solvation -88.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds