Wall clock time and date at job start Tue Mar 31 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46493 * 109.47302 * 2 1 4 4 C 1.46498 * 120.00121 * 85.02501 * 3 2 1 5 5 C 1.50699 * 109.47113 * 95.36841 * 4 3 2 6 6 H 1.08001 * 119.99665 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00141 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00088 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99715 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47282 * 90.00409 * 9 7 5 11 11 H 1.48506 * 109.46792 * 210.00010 * 9 7 5 12 12 H 1.48499 * 109.47195 * 329.99999 * 9 7 5 13 13 C 1.34771 * 120.00101 * 265.02721 * 3 2 1 14 14 O 1.21496 * 120.00104 * 5.50503 * 13 3 2 15 15 C 1.48330 * 120.00325 * 185.50037 * 13 3 2 16 16 N 1.31601 * 127.15748 * 355.22318 * 15 13 3 17 17 O 1.21560 * 111.55315 * 179.97438 * 16 15 13 18 18 C 1.32817 * 111.51481 * 359.96450 * 17 16 15 19 19 C 1.35712 * 106.70227 * 359.83864 * 18 17 16 20 20 C 1.50038 * 123.86250 * 179.47510 * 19 18 17 21 21 O 1.43618 * 107.87859 * 345.80731 * 20 19 18 22 22 C 1.43002 * 114.38019 * 49.80147 * 21 20 19 23 23 C 1.50669 * 130.83001 * 180.19528 * 18 17 16 24 24 H 1.08999 * 109.46678 * 300.00054 * 1 2 3 25 25 H 1.08999 * 109.46904 * 59.99932 * 1 2 3 26 26 H 1.09001 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46678 * 239.99946 * 2 1 3 28 28 H 1.08999 * 109.46904 * 120.00068 * 2 1 3 29 29 H 1.08997 * 109.47514 * 215.36847 * 4 3 2 30 30 H 1.09000 * 109.47210 * 335.37013 * 4 3 2 31 31 H 0.97000 * 119.99753 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.93441 * 226.10999 * 20 19 18 33 33 H 1.09001 * 109.63656 * 105.33288 * 20 19 18 34 34 H 1.09005 * 109.39797 * 169.44351 * 22 21 20 35 35 H 1.09002 * 109.32455 * 49.66630 * 22 21 20 36 36 H 1.08998 * 109.81838 * 283.57347 * 23 18 17 37 37 H 1.09000 * 109.82021 * 44.49639 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1589 2.1084 1.2639 5 6 3.5795 1.9946 1.7538 6 1 4.3052 1.4367 1.1806 7 6 3.9528 2.6028 2.9336 8 7 3.0692 3.2826 3.6312 9 14 5.7139 2.4622 3.5403 10 1 6.5163 3.5871 2.9960 11 1 5.7318 2.5141 5.0243 12 1 6.2937 1.1738 3.0830 13 6 2.3385 1.9827 -1.1627 14 8 2.1284 1.4172 -2.2173 15 6 2.9471 3.3354 -1.1551 16 7 3.1548 4.1077 -0.1099 17 8 3.6726 5.1604 -0.4284 18 6 3.8791 5.2249 -1.7388 19 6 3.4275 4.0572 -2.2628 20 6 3.4656 3.7274 -3.7259 21 8 3.7260 4.9428 -4.4453 22 6 4.8376 5.6946 -3.9512 23 6 4.4879 6.3105 -2.5879 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9112 3.1584 1.1084 30 1 1.4836 1.6818 2.0056 31 1 3.3317 3.7101 4.4614 32 1 2.5076 3.3117 -4.0382 33 1 4.2606 3.0070 -3.9184 34 1 5.0791 6.4898 -4.6566 35 1 5.6984 5.0351 -3.8406 36 1 3.7714 7.1209 -2.7212 37 1 5.3916 6.6897 -2.1108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348052991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:52 Heat of formation + Delta-G solvation = -6.329666 kcal Electronic energy + Delta-G solvation = -22828.194818 eV Core-core repulsion = 19381.731518 eV Total energy + Delta-G solvation = -3446.463301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.55111 -39.10287 -38.73652 -35.35063 -33.66842 -32.98152 -32.64349 -30.81268 -29.90477 -27.10028 -26.22874 -24.42883 -23.89607 -23.06558 -21.80211 -20.45090 -18.60736 -17.40184 -17.09942 -16.63625 -16.19158 -15.92225 -15.46725 -15.27671 -14.74757 -14.45422 -14.21863 -13.66586 -13.55004 -13.22317 -12.87906 -12.70580 -12.41393 -12.02229 -11.76442 -11.66037 -11.51704 -11.12122 -10.95127 -10.91398 -10.54887 -10.32373 -10.05076 -10.03338 -9.75312 -9.63487 -9.49281 -8.78979 -8.45406 -7.81189 -6.09731 -4.13632 1.76362 2.03084 3.22743 3.25155 3.31599 3.34200 3.65055 3.70930 3.85726 4.37243 4.61064 4.62498 4.87938 4.99402 5.13078 5.25839 5.27567 5.41193 5.46872 5.54150 5.66856 5.72038 5.74096 5.83281 5.86379 6.01484 6.18647 6.23034 6.36996 6.59547 6.73611 7.01982 7.32142 7.51786 7.80836 8.12957 8.17155 8.56937 8.82745 8.90602 9.50437 10.98365 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.007646 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.096239 B = 3661.284431 C = 5116.018677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.579 5.579 4 C 0.230 3.770 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.072 3.928 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.595 3.405 14 O -0.562 6.562 15 C -0.012 4.012 16 N -0.257 5.257 17 O 0.130 5.870 18 C -0.057 4.057 19 C -0.206 4.206 20 C 0.146 3.854 21 O -0.380 6.380 22 C 0.062 3.938 23 C -0.065 4.065 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 3.809 -11.235 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.308 5.308 4 C 0.110 3.890 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.131 4.131 8 N -0.524 5.524 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.381 3.619 14 O -0.442 6.442 15 C -0.170 4.170 16 N 0.044 4.956 17 O 0.055 5.945 18 C -0.122 4.122 19 C -0.211 4.211 20 C 0.069 3.931 21 O -0.298 6.298 22 C -0.015 4.015 23 C -0.103 4.103 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.889 3.446 -10.406 10.998 hybrid contribution 1.275 -0.206 0.315 1.330 sum 2.165 3.241 -10.091 10.817 Atomic orbital electron populations 1.22110 0.96448 1.01438 1.02184 1.21340 0.93809 0.82929 1.02755 1.48221 1.60768 1.13669 1.08188 1.19774 0.97630 0.92952 0.78641 1.21253 0.95008 1.33201 1.06690 0.92850 1.24804 0.97179 0.94752 0.96332 1.69912 1.33800 1.33453 1.15254 0.86627 0.85159 0.78488 0.77953 1.20579 1.21022 1.20023 1.16879 0.78027 0.82846 0.84124 1.90659 1.56953 1.65401 1.31175 1.22697 1.06477 0.98701 0.89126 1.75511 1.08232 0.92010 1.19836 1.84844 1.56338 1.31326 1.22019 1.23865 1.04508 0.98858 0.84959 1.21200 1.06167 0.95186 0.98561 1.20879 1.03089 0.85558 0.83558 1.88077 1.50265 1.35954 1.55487 1.22687 0.89218 0.95884 0.93709 1.20905 1.01648 0.94693 0.93092 0.92381 0.92720 0.92145 0.90684 0.90253 0.92434 0.94542 0.92715 0.86439 0.91059 0.87417 0.92330 0.88301 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.11 2.15 6.12 -4.04 -0.02 2.12 16 3 N -0.58 -12.95 2.47 -176.00 -0.43 -13.39 16 4 C 0.23 5.79 4.78 -5.20 -0.02 5.76 16 5 C -0.52 -14.18 8.09 -34.44 -0.28 -14.46 16 6 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 8 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.60 13.40 7.65 -12.11 -0.09 13.31 16 14 O -0.56 -12.65 15.81 5.37 0.08 -12.56 16 15 C -0.01 -0.26 6.76 -82.90 -0.56 -0.82 16 16 N -0.26 -5.89 7.95 33.26 0.26 -5.62 16 17 O 0.13 2.59 11.17 20.04 0.22 2.82 16 18 C -0.06 -0.94 7.50 -35.23 -0.26 -1.21 16 19 C -0.21 -3.73 6.15 -104.93 -0.65 -4.38 16 20 C 0.15 2.23 6.70 35.69 0.24 2.47 16 21 O -0.38 -5.15 10.76 -35.23 -0.38 -5.53 16 22 C 0.06 0.63 6.77 37.49 0.25 0.88 16 23 C -0.07 -0.70 6.56 -27.57 -0.18 -0.88 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 28 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 29 H 0.06 1.55 5.68 -51.93 -0.30 1.26 16 30 H 0.04 0.95 8.03 -51.93 -0.42 0.53 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.12 1.84 7.93 -51.93 -0.41 1.43 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -31.53 313.39 -5.95 -37.48 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.85 Total: -2.25 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.30 Total: 2.43 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.57 Total: -43.46 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.07 Total: -15.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.53 -5.95 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348052991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.149 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds