Wall clock time and date at job start Tue Mar 31 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46493 * 109.47302 * 2 1 4 4 C 1.46498 * 120.00121 * 85.02501 * 3 2 1 5 5 C 1.50699 * 109.47113 * 95.36841 * 4 3 2 6 6 H 1.08001 * 119.99665 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00141 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00088 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99715 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47282 * 90.00409 * 9 7 5 11 11 H 1.48506 * 109.46792 * 210.00010 * 9 7 5 12 12 H 1.48499 * 109.47195 * 329.99999 * 9 7 5 13 13 C 1.34771 * 120.00101 * 265.02721 * 3 2 1 14 14 O 1.21496 * 120.00104 * 5.50503 * 13 3 2 15 15 C 1.48330 * 120.00325 * 185.50037 * 13 3 2 16 16 N 1.31601 * 127.15748 * 355.22318 * 15 13 3 17 17 O 1.21560 * 111.55315 * 179.97438 * 16 15 13 18 18 C 1.32817 * 111.51481 * 359.96450 * 17 16 15 19 19 C 1.35712 * 106.70227 * 359.83864 * 18 17 16 20 20 C 1.50038 * 123.86250 * 179.47510 * 19 18 17 21 21 O 1.43618 * 107.87859 * 345.80731 * 20 19 18 22 22 C 1.43002 * 114.38019 * 49.80147 * 21 20 19 23 23 C 1.50669 * 130.83001 * 180.19528 * 18 17 16 24 24 H 1.08999 * 109.46678 * 300.00054 * 1 2 3 25 25 H 1.08999 * 109.46904 * 59.99932 * 1 2 3 26 26 H 1.09001 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46678 * 239.99946 * 2 1 3 28 28 H 1.08999 * 109.46904 * 120.00068 * 2 1 3 29 29 H 1.08997 * 109.47514 * 215.36847 * 4 3 2 30 30 H 1.09000 * 109.47210 * 335.37013 * 4 3 2 31 31 H 0.97000 * 119.99753 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.93441 * 226.10999 * 20 19 18 33 33 H 1.09001 * 109.63656 * 105.33288 * 20 19 18 34 34 H 1.09005 * 109.39797 * 169.44351 * 22 21 20 35 35 H 1.09002 * 109.32455 * 49.66630 * 22 21 20 36 36 H 1.08998 * 109.81838 * 283.57347 * 23 18 17 37 37 H 1.09000 * 109.82021 * 44.49639 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1589 2.1084 1.2639 5 6 3.5795 1.9946 1.7538 6 1 4.3052 1.4367 1.1806 7 6 3.9528 2.6028 2.9336 8 7 3.0692 3.2826 3.6312 9 14 5.7139 2.4622 3.5403 10 1 6.5163 3.5871 2.9960 11 1 5.7318 2.5141 5.0243 12 1 6.2937 1.1738 3.0830 13 6 2.3385 1.9827 -1.1627 14 8 2.1284 1.4172 -2.2173 15 6 2.9471 3.3354 -1.1551 16 7 3.1548 4.1077 -0.1099 17 8 3.6726 5.1604 -0.4284 18 6 3.8791 5.2249 -1.7388 19 6 3.4275 4.0572 -2.2628 20 6 3.4656 3.7274 -3.7259 21 8 3.7260 4.9428 -4.4453 22 6 4.8376 5.6946 -3.9512 23 6 4.4879 6.3105 -2.5879 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9112 3.1584 1.1084 30 1 1.4836 1.6818 2.0056 31 1 3.3317 3.7101 4.4614 32 1 2.5076 3.3117 -4.0382 33 1 4.2606 3.0070 -3.9184 34 1 5.0791 6.4898 -4.6566 35 1 5.6984 5.0351 -3.8406 36 1 3.7714 7.1209 -2.7212 37 1 5.3916 6.6897 -2.1108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348052991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:51 Heat of formation + Delta-G solvation = -26.558920 kcal Electronic energy + Delta-G solvation = -22829.072024 eV Core-core repulsion = 19381.731518 eV Total energy + Delta-G solvation = -3447.340507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.08795 -40.82012 -39.81338 -37.12270 -35.18729 -34.66405 -34.11658 -32.20516 -31.29637 -29.07754 -27.56166 -25.95156 -25.10465 -24.85562 -23.31330 -21.82664 -20.14083 -18.98577 -18.67340 -18.40789 -17.81850 -17.28530 -16.96433 -16.53360 -16.32219 -16.01128 -15.79579 -15.12727 -14.60671 -14.56933 -14.42620 -14.34122 -13.73956 -13.66956 -13.44159 -13.19146 -12.80182 -12.74480 -12.71950 -12.25503 -12.00589 -11.99316 -11.82965 -11.74052 -11.35027 -11.25431 -10.86405 -10.57733 -10.11955 -9.62608 -8.19265 -6.30097 0.24402 0.58133 1.34667 1.35656 1.44914 1.88351 2.05700 2.18581 2.38563 2.70139 3.05834 3.13429 3.51233 3.65729 3.82085 4.02367 4.15305 4.22807 4.30150 4.35902 4.39318 4.47022 4.55658 4.69901 4.71871 4.86848 4.90576 4.93320 4.97329 5.07242 5.18076 5.29708 5.61755 5.73386 6.03108 6.04930 6.32853 6.72817 6.97732 7.24467 7.37690 8.88373 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.007646 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.096239 B = 3661.284431 C = 5116.018677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.039 0.961 7 C 0.031 3.969 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.273 1.273 13 C 0.588 3.412 14 O -0.567 6.567 15 C -0.038 4.038 16 N -0.301 5.301 17 O 0.125 5.875 18 C -0.041 4.041 19 C -0.222 4.222 20 C 0.154 3.846 21 O -0.386 6.386 22 C 0.055 3.945 23 C -0.063 4.063 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.022 0.978 31 H 0.266 0.734 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 4.681 -12.412 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.315 5.315 4 C 0.126 3.874 5 C -0.565 4.565 6 H 0.057 0.943 7 C -0.170 4.170 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.198 1.198 13 C 0.375 3.625 14 O -0.448 6.448 15 C -0.195 4.195 16 N -0.001 5.001 17 O 0.049 5.951 18 C -0.106 4.106 19 C -0.227 4.227 20 C 0.077 3.923 21 O -0.304 6.304 22 C -0.021 4.021 23 C -0.101 4.101 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.168 0.832 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.224 4.302 -11.591 12.562 hybrid contribution 0.876 -0.404 0.592 1.131 sum 3.100 3.898 -10.999 12.074 Atomic orbital electron populations 1.22022 0.94266 1.03476 1.01286 1.21585 0.95636 0.81208 1.03042 1.48263 1.61139 1.14836 1.07295 1.19351 0.96415 0.92248 0.79344 1.21300 0.95464 1.32998 1.06728 0.94294 1.25473 1.00706 0.94368 0.96433 1.70005 1.35497 1.34166 1.15652 0.85729 0.80784 0.78405 0.77798 1.20280 1.20058 1.19776 1.17110 0.77948 0.83399 0.84033 1.90630 1.57319 1.65791 1.31046 1.22891 1.07395 0.98696 0.90534 1.75480 1.10184 0.93234 1.21200 1.84767 1.55942 1.30359 1.23990 1.24913 1.02375 0.99693 0.83631 1.21570 1.06461 0.95421 0.99292 1.20756 1.02917 0.86694 0.81925 1.88075 1.51791 1.35349 1.55196 1.23082 0.88152 0.96730 0.94126 1.21321 1.03091 0.93381 0.92290 0.93227 0.93548 0.88615 0.90185 0.90070 0.94193 0.95980 0.92513 0.87460 0.90440 0.83242 0.91762 0.86084 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 10.24 71.98 0.74 -4.10 16 2 C 0.11 4.04 6.12 86.38 0.53 4.57 16 3 N -0.59 -26.95 2.47 -829.04 -2.05 -29.00 16 4 C 0.25 12.90 4.78 85.63 0.41 13.31 16 5 C -0.53 -29.19 8.09 25.60 0.21 -28.98 16 6 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 7 C 0.03 1.70 5.46 84.66 0.46 2.16 16 8 N -0.91 -52.68 13.29 21.45 0.28 -52.40 16 9 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.59 27.21 7.65 86.93 0.66 27.87 16 14 O -0.57 -25.91 15.81 -3.70 -0.06 -25.97 16 15 C -0.04 -1.70 6.76 42.46 0.29 -1.41 16 16 N -0.30 -14.18 7.95 -48.98 -0.39 -14.57 16 17 O 0.12 4.99 11.17 81.70 0.91 5.90 16 18 C -0.04 -1.31 7.50 25.09 0.19 -1.12 16 19 C -0.22 -7.98 6.15 -20.06 -0.12 -8.10 16 20 C 0.15 4.58 6.70 71.03 0.48 5.06 16 21 O -0.39 -9.48 10.76 -148.98 -1.60 -11.09 16 22 C 0.06 0.90 6.77 72.20 0.49 1.39 16 23 C -0.06 -1.13 6.56 30.05 0.20 -0.93 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 2.92 7.36 -2.39 -0.02 2.90 16 28 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 29 H 0.04 2.26 5.68 -2.39 -0.01 2.25 16 30 H 0.02 1.20 8.03 -2.39 -0.02 1.18 16 31 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.11 3.37 7.93 -2.39 -0.02 3.35 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.15 1.26 8.14 -2.38 -0.02 1.25 16 35 H 0.06 1.01 8.09 -2.39 -0.02 0.99 16 36 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -69.68 313.39 4.73 -64.95 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.08 Total: 6.57 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 4.52 Total: 9.72 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -2.15 Total: -95.97 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.75 Total: -31.16 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.68 4.73 -64.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348052991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.395 kcal (2) G-P(sol) polarization free energy of solvation -69.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds