Wall clock time and date at job start Tue Mar 31 2020 02:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46951 * 2 1 4 4 C 1.34977 * 116.99612 * 179.97438 * 3 2 1 5 5 O 1.21694 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.41546 * 119.99727 * 179.97438 * 4 3 2 7 7 N 1.38281 * 126.35561 * 359.96087 * 6 4 3 8 8 H 0.96995 * 125.66258 * 0.02562 * 7 6 4 9 9 C 1.35620 * 108.68723 * 180.02562 * 7 6 4 10 10 C 1.35226 * 109.16366 * 359.76778 * 9 7 6 11 11 C 1.38824 * 126.35967 * 180.02562 * 6 4 3 12 12 N 1.39451 * 126.55295 * 359.92694 * 11 6 4 13 13 C 1.34777 * 119.99816 * 179.72237 * 12 11 6 14 14 O 1.21283 * 120.00222 * 0.28280 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27840 * 13 12 11 16 16 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 17 17 C 1.53007 * 109.47063 * 300.00464 * 15 13 12 18 18 C 1.50701 * 109.47355 * 180.02562 * 15 13 12 19 19 H 1.08000 * 119.99624 * 0.02562 * 18 15 13 20 20 C 1.37872 * 119.99634 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00230 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99703 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.46919 * 60.00153 * 22 20 18 24 24 H 1.48496 * 109.47105 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47194 * 300.00217 * 22 20 18 26 26 H 1.09004 * 109.47130 * 59.99823 * 1 2 3 27 27 H 1.08995 * 109.47173 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47071 * 299.99831 * 1 2 3 29 29 H 1.08996 * 109.47071 * 240.00169 * 2 1 3 30 30 H 1.08999 * 109.47306 * 119.99704 * 2 1 3 31 31 H 1.07995 * 125.41692 * 179.97438 * 9 7 6 32 32 H 1.08001 * 126.01203 * 180.26361 * 10 9 7 33 33 H 0.97001 * 120.00396 * 0.02562 * 12 11 6 34 34 H 1.09001 * 109.46852 * 59.99630 * 17 15 13 35 35 H 1.08993 * 109.46731 * 179.97438 * 17 15 13 36 36 H 1.09003 * 109.46582 * 300.00001 * 17 15 13 37 37 H 0.97000 * 119.99613 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3445 1.5241 0.0005 5 8 4.0858 0.5591 0.0005 6 6 3.8855 2.8321 0.0000 7 7 3.1697 4.0153 -0.0018 8 1 2.2027 4.0912 -0.0026 9 6 4.0440 5.0521 -0.0023 10 6 5.3066 4.5680 0.0044 11 6 5.2331 3.1654 0.0000 12 7 6.3083 2.2773 0.0018 13 6 7.5711 2.7480 -0.0041 14 8 7.7726 3.9440 -0.0059 15 6 8.7331 1.7883 -0.0084 16 1 8.6820 1.1600 -0.8977 17 6 8.6724 0.9084 1.2418 18 6 10.0252 2.5639 -0.0142 19 1 10.0068 3.6437 -0.0142 20 6 11.2307 1.8948 -0.0183 21 7 11.2530 0.5798 -0.0177 22 14 12.8324 2.8561 -0.0246 23 1 12.9010 3.7116 1.1873 24 1 13.9773 1.9104 -0.0290 25 1 12.8921 3.7105 -1.2377 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7746 6.0979 -0.0040 32 1 6.2122 5.1564 0.0097 33 1 6.1473 1.3207 0.0030 34 1 7.7378 0.3475 1.2463 35 1 9.5126 0.2140 1.2384 36 1 8.7234 1.5367 2.1311 37 1 12.1012 0.1092 -0.0202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351257879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:06 Heat of formation + Delta-G solvation = -106.863386 kcal Electronic energy + Delta-G solvation = -21703.141837 eV Core-core repulsion = 18252.319067 eV Total energy + Delta-G solvation = -3450.822770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.70386 -41.12948 -40.40264 -37.82938 -35.87664 -35.68609 -32.84955 -32.66952 -31.15759 -30.20699 -27.24116 -25.61992 -24.63939 -23.34968 -22.49318 -21.59613 -20.57547 -19.85974 -18.42264 -18.07589 -17.83956 -17.77472 -16.76935 -16.39008 -16.22021 -16.04480 -15.48882 -14.94539 -14.64978 -14.61827 -14.42751 -14.06275 -13.68615 -13.56100 -13.34808 -12.96587 -12.95274 -12.74940 -12.60663 -12.52167 -12.31313 -12.00437 -11.93696 -11.81764 -11.50797 -11.09231 -10.61758 -10.34627 -9.55902 -8.89908 -8.15095 -6.27082 -0.01337 1.43392 1.45668 1.53829 1.54939 1.66655 1.75745 1.98792 2.32155 2.40760 2.54630 3.14685 3.87828 4.00611 4.01355 4.11152 4.16290 4.36020 4.39641 4.62804 4.67592 4.85940 4.88635 4.91588 4.92833 4.99273 5.13065 5.26772 5.39553 5.43955 5.60653 5.70657 5.87043 5.96603 6.14771 6.50573 6.62938 6.71643 6.81834 7.28056 7.42688 8.91315 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.004049 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.427458 B = 6914.475093 C = 7842.418244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.542 3.458 5 O -0.549 6.549 6 C -0.126 4.126 7 N -0.510 5.510 8 H 0.444 0.556 9 C 0.113 3.887 10 C -0.267 4.267 11 C 0.167 3.833 12 N -0.647 5.647 13 C 0.522 3.478 14 O -0.542 6.542 15 C 0.027 3.973 16 H 0.041 0.959 17 C -0.121 4.121 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.276 1.276 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.234 0.766 32 H 0.149 0.851 33 H 0.419 0.581 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.583 3.302 0.444 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.392 3.608 5 O -0.441 6.441 6 C -0.236 4.236 7 N -0.111 5.111 8 H 0.287 0.713 9 C -0.028 4.028 10 C -0.293 4.293 11 C 0.060 3.940 12 N -0.292 5.292 13 C 0.312 3.688 14 O -0.418 6.418 15 C 0.006 3.994 16 H 0.059 0.941 17 C -0.180 4.180 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.181 4.181 21 N -0.552 5.552 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.201 1.201 25 H -0.199 1.199 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.166 0.834 33 H 0.258 0.742 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.257 3.548 0.443 23.530 hybrid contribution 0.811 -0.543 -0.059 0.977 sum -22.446 3.005 0.384 22.650 Atomic orbital electron populations 1.21811 0.89799 1.04447 1.03826 1.22914 0.97327 0.79586 1.02336 1.86120 1.22464 1.33730 1.84653 1.18396 0.81176 0.87921 0.73259 1.90848 1.60747 1.42314 1.50219 1.17340 0.89418 0.85585 1.31281 1.41673 1.09818 1.03078 1.56486 0.71338 1.22795 0.87024 0.95080 0.97859 1.21377 0.99761 0.91614 1.16548 1.18068 0.85654 0.91964 0.98340 1.43425 1.04168 1.10644 1.70934 1.21828 0.83683 0.90274 0.72974 1.90425 1.85237 1.17796 1.48382 1.18829 0.90205 0.93219 0.97149 0.94139 1.21585 1.00987 0.99334 0.96046 1.21231 0.90452 0.93477 1.51627 0.92416 1.25677 1.02175 0.95931 0.94354 1.69965 1.27178 1.07448 1.50648 0.85538 0.78497 0.78395 0.78771 1.19858 1.20132 1.19914 0.91020 0.88350 0.91021 0.91875 0.91859 0.74933 0.83374 0.74194 0.94134 0.90496 0.95298 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.97 6.10 71.98 0.44 1.41 16 3 O -0.35 -8.04 10.09 -58.94 -0.59 -8.64 16 4 C 0.54 16.21 7.72 68.64 0.53 16.74 16 5 O -0.55 -19.70 14.74 19.20 0.28 -19.41 16 6 C -0.13 -3.70 6.92 39.08 0.27 -3.43 16 7 N -0.51 -9.66 6.10 -186.90 -1.14 -10.80 16 8 H 0.44 4.81 8.96 -92.71 -0.83 3.98 16 9 C 0.11 2.17 11.87 83.41 0.99 3.16 16 10 C -0.27 -8.63 9.61 22.12 0.21 -8.42 16 11 C 0.17 6.10 6.91 38.61 0.27 6.37 16 12 N -0.65 -27.28 5.28 -302.69 -1.60 -28.88 16 13 C 0.52 25.76 7.11 87.66 0.62 26.38 16 14 O -0.54 -28.63 12.64 -3.04 -0.04 -28.67 16 15 C 0.03 1.45 2.64 -12.28 -0.03 1.42 16 16 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.12 -6.01 8.86 71.98 0.64 -5.37 16 18 C -0.53 -31.16 8.37 25.60 0.21 -30.94 16 19 H 0.06 3.54 6.75 -2.91 -0.02 3.52 16 20 C 0.02 1.01 5.30 84.65 0.45 1.46 16 21 N -0.91 -52.60 11.32 21.45 0.24 -52.36 16 22 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.23 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.15 5.62 5.97 -2.91 -0.02 5.60 16 33 H 0.42 17.20 6.21 -92.71 -0.58 16.62 16 34 H 0.04 1.74 7.56 -2.39 -0.02 1.72 16 35 H 0.08 4.11 6.07 -2.39 -0.01 4.09 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -74.19 317.58 4.24 -69.95 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.29 Total: 23.51 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.34 Total: 8.00 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.50 Total: -92.04 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.35 Total: -56.72 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -74.19 4.24 -69.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351257879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.909 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds