Wall clock time and date at job start Tue Mar 31 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47368 * 2 1 4 4 C 1.46500 * 120.00437 * 270.00691 * 3 2 1 5 5 C 1.50703 * 109.46871 * 269.99950 * 4 3 2 6 6 H 1.08001 * 120.00219 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00032 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00082 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46970 * 60.00267 * 9 7 5 11 11 H 1.48499 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47252 * 300.00113 * 9 7 5 13 13 C 1.34783 * 119.99912 * 89.99736 * 3 2 1 14 14 O 1.21584 * 119.99970 * 180.02562 * 13 3 2 15 15 N 1.34773 * 119.99727 * 0.02562 * 13 3 2 16 16 C 1.46506 * 119.99615 * 184.59362 * 15 13 3 17 17 C 1.52993 * 115.54825 * 293.75248 * 16 15 13 18 18 F 1.39907 * 109.47256 * 65.78006 * 17 16 15 19 19 F 1.39901 * 109.47294 * 185.77658 * 17 16 15 20 20 F 1.39902 * 109.47552 * 305.77940 * 17 16 15 21 21 C 1.53002 * 117.49674 * 148.08669 * 16 15 13 22 22 C 1.52998 * 117.49992 * 79.42768 * 16 15 13 23 23 H 1.09005 * 109.46901 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47134 * 299.99293 * 1 2 3 25 25 H 1.08996 * 109.47421 * 59.99952 * 1 2 3 26 26 H 1.09009 * 109.46937 * 240.00497 * 2 1 3 27 27 H 1.08994 * 109.47410 * 120.00599 * 2 1 3 28 28 H 1.09004 * 109.47019 * 29.99216 * 4 3 2 29 29 H 1.09000 * 109.47795 * 149.99730 * 4 3 2 30 30 H 0.97000 * 120.00502 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00654 * 4.31845 * 15 13 3 32 32 H 1.09001 * 117.50173 * 359.97438 * 21 16 15 33 33 H 1.09001 * 117.49644 * 145.02098 * 21 16 15 34 34 H 1.08996 * 117.49840 * 214.97576 * 22 16 15 35 35 H 1.09005 * 117.49949 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1489 2.3897 -2.8779 8 7 3.3487 3.1251 -3.6185 9 14 5.9134 2.0967 -3.4170 10 1 6.1415 0.6401 -3.5939 11 1 6.1604 2.7958 -4.7036 12 1 6.8406 2.6209 -2.3823 13 6 2.2429 2.0165 1.1673 14 8 2.6478 3.1630 1.1673 15 7 2.0187 1.3810 2.3344 16 6 2.1659 2.1021 3.6011 17 6 3.5878 2.5509 3.9436 18 9 4.0103 3.5098 3.0166 19 9 3.6055 3.1047 5.2282 20 9 4.4482 1.4486 3.8991 21 6 1.2578 1.6865 4.7603 22 6 1.0144 3.0118 4.0341 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.5816 1.6878 -2.0283 29 1 2.0955 3.1411 -1.1383 30 1 3.6747 3.5156 -4.4444 31 1 1.7560 0.4472 2.3356 32 1 0.5506 0.8768 4.5803 33 1 1.6734 1.7332 5.7669 34 1 1.2699 3.9298 4.5633 35 1 0.1475 3.0741 3.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351689572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:14 Heat of formation + Delta-G solvation = -145.486068 kcal Electronic energy + Delta-G solvation = -23416.150344 eV Core-core repulsion = 19421.796028 eV Total energy + Delta-G solvation = -3994.354315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.77434 -47.41848 -47.06484 -39.76436 -37.49468 -35.19557 -33.05989 -32.08258 -30.11774 -27.17101 -26.46850 -23.20582 -23.06313 -22.79123 -20.97349 -19.42912 -18.37491 -17.95414 -17.67692 -17.28379 -16.34248 -15.81037 -15.03750 -14.46240 -14.35802 -14.16464 -14.00404 -13.90628 -13.71725 -13.60979 -13.31339 -13.23764 -13.19800 -12.47670 -12.25291 -12.00372 -11.82568 -11.76853 -11.18369 -11.12124 -10.91386 -10.86115 -10.72703 -10.49542 -10.09323 -9.63137 -9.23118 -8.92748 -8.38814 -7.63395 -6.00120 -4.04272 2.68732 3.01512 3.22123 3.35361 3.39562 3.44111 3.80334 3.91927 4.25748 4.35349 4.37075 4.51437 4.86744 4.91710 5.10642 5.27081 5.28338 5.34162 5.57574 5.64176 5.66185 5.80734 5.94636 6.19353 6.43725 6.60799 6.76910 7.36798 7.55612 7.69485 7.98375 8.28068 8.64365 8.96589 9.31749 9.61244 11.07757 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.006127 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.297520 B = 4568.485893 C = 5394.066883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.608 5.608 4 C 0.263 3.737 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.696 3.304 14 O -0.560 6.560 15 N -0.718 5.718 16 C 0.057 3.943 17 C 0.477 3.523 18 F -0.147 7.147 19 F -0.187 7.187 20 F -0.183 7.183 21 C -0.147 4.147 22 C -0.142 4.142 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.400 0.600 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 -6.420 16.079 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 N -0.344 5.344 4 C 0.144 3.856 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.397 3.603 14 O -0.434 6.434 15 N -0.377 5.377 16 C -0.035 4.035 17 C 0.421 3.579 18 F -0.128 7.128 19 F -0.169 7.169 20 F -0.164 7.164 21 C -0.185 4.185 22 C -0.180 4.180 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.689 -5.436 15.794 17.993 hybrid contribution 1.199 -0.651 -0.407 1.424 sum -5.490 -6.087 15.387 17.434 Atomic orbital electron populations 1.22235 0.96776 1.01315 1.02441 1.21337 0.93470 0.84504 1.02303 1.47564 1.67467 1.13207 1.06121 1.19194 0.96082 0.93462 0.76910 1.21437 0.97069 1.31859 1.06115 0.92588 1.24908 0.97760 0.94943 0.96399 1.69916 1.35685 1.33528 1.14384 0.86579 0.84990 0.78191 0.77786 1.20314 1.21188 1.20185 1.15991 0.79195 0.85056 0.80029 1.90978 1.50592 1.16471 1.85402 1.44549 1.77049 1.14073 1.02054 1.20847 0.88305 1.05610 0.88764 1.19797 0.88104 0.75841 0.74148 1.93383 1.91032 1.63696 1.64710 1.93126 1.96927 1.86237 1.40615 1.93163 1.73039 1.54077 1.96126 1.23471 0.99888 0.99904 0.95228 1.23444 0.98169 0.94785 1.01632 0.92228 0.93164 0.91868 0.89670 0.92583 0.94912 0.93772 0.92710 0.76226 0.86737 0.86607 0.87059 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.15 0.38 -1.77 16 2 C 0.11 1.69 5.93 -4.05 -0.02 1.67 16 3 N -0.61 -12.84 2.46 -180.81 -0.44 -13.28 16 4 C 0.26 6.89 5.16 -5.19 -0.03 6.86 16 5 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.70 14.73 8.16 -86.92 -0.71 14.02 16 14 O -0.56 -14.37 13.25 5.29 0.07 -14.30 16 15 N -0.72 -11.20 5.30 -52.42 -0.28 -11.48 16 16 C 0.06 0.80 1.97 -131.82 -0.26 0.54 16 17 C 0.48 7.80 3.16 37.15 0.12 7.91 16 18 F -0.15 -3.07 14.50 2.25 0.03 -3.04 16 19 F -0.19 -2.62 15.90 2.25 0.04 -2.58 16 20 F -0.18 -3.07 17.29 2.25 0.04 -3.03 16 21 C -0.15 -1.31 9.88 -26.69 -0.26 -1.57 16 22 C -0.14 -1.61 9.92 -26.69 -0.26 -1.88 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.40 8.07 -51.92 -0.42 0.98 16 27 H 0.06 0.72 6.30 -51.93 -0.33 0.39 16 28 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.40 5.01 6.53 -40.82 -0.27 4.74 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.12 0.87 7.61 -51.93 -0.40 0.47 16 34 H 0.11 1.19 7.95 -51.93 -0.41 0.78 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 310.91 15.07 4.69 4.69 Total: -1.00 -34.22 310.91 -5.90 -40.12 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.28 Total: -0.30 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -1.47 Total: 12.01 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.01 Total: -50.89 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.07 Total: -14.30 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.11 Total: -8.65 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.22 -5.90 -40.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351689572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.367 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds