Wall clock time and date at job start Tue Mar 31 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47368 * 2 1 4 4 C 1.46500 * 120.00437 * 270.00691 * 3 2 1 5 5 C 1.50703 * 109.46871 * 269.99950 * 4 3 2 6 6 H 1.08001 * 120.00219 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00032 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00082 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46970 * 60.00267 * 9 7 5 11 11 H 1.48499 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47252 * 300.00113 * 9 7 5 13 13 C 1.34783 * 119.99912 * 89.99736 * 3 2 1 14 14 O 1.21584 * 119.99970 * 180.02562 * 13 3 2 15 15 N 1.34773 * 119.99727 * 0.02562 * 13 3 2 16 16 C 1.46506 * 119.99615 * 184.59362 * 15 13 3 17 17 C 1.52993 * 115.54825 * 293.75248 * 16 15 13 18 18 F 1.39907 * 109.47256 * 65.78006 * 17 16 15 19 19 F 1.39901 * 109.47294 * 185.77658 * 17 16 15 20 20 F 1.39902 * 109.47552 * 305.77940 * 17 16 15 21 21 C 1.53002 * 117.49674 * 148.08669 * 16 15 13 22 22 C 1.52998 * 117.49992 * 79.42768 * 16 15 13 23 23 H 1.09005 * 109.46901 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47134 * 299.99293 * 1 2 3 25 25 H 1.08996 * 109.47421 * 59.99952 * 1 2 3 26 26 H 1.09009 * 109.46937 * 240.00497 * 2 1 3 27 27 H 1.08994 * 109.47410 * 120.00599 * 2 1 3 28 28 H 1.09004 * 109.47019 * 29.99216 * 4 3 2 29 29 H 1.09000 * 109.47795 * 149.99730 * 4 3 2 30 30 H 0.97000 * 120.00502 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00654 * 4.31845 * 15 13 3 32 32 H 1.09001 * 117.50173 * 359.97438 * 21 16 15 33 33 H 1.09001 * 117.49644 * 145.02098 * 21 16 15 34 34 H 1.08996 * 117.49840 * 214.97576 * 22 16 15 35 35 H 1.09005 * 117.49949 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1489 2.3897 -2.8779 8 7 3.3487 3.1251 -3.6185 9 14 5.9134 2.0967 -3.4170 10 1 6.1415 0.6401 -3.5939 11 1 6.1604 2.7958 -4.7036 12 1 6.8406 2.6209 -2.3823 13 6 2.2429 2.0165 1.1673 14 8 2.6478 3.1630 1.1673 15 7 2.0187 1.3810 2.3344 16 6 2.1659 2.1021 3.6011 17 6 3.5878 2.5509 3.9436 18 9 4.0103 3.5098 3.0166 19 9 3.6055 3.1047 5.2282 20 9 4.4482 1.4486 3.8991 21 6 1.2578 1.6865 4.7603 22 6 1.0144 3.0118 4.0341 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.5816 1.6878 -2.0283 29 1 2.0955 3.1411 -1.1383 30 1 3.6747 3.5156 -4.4444 31 1 1.7560 0.4472 2.3356 32 1 0.5506 0.8768 4.5803 33 1 1.6734 1.7332 5.7669 34 1 1.2699 3.9298 4.5633 35 1 0.1475 3.0741 3.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351689572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:13 Heat of formation + Delta-G solvation = -168.684006 kcal Electronic energy + Delta-G solvation = -23417.156282 eV Core-core repulsion = 19421.796028 eV Total energy + Delta-G solvation = -3995.360253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.04912 -48.64523 -48.46853 -41.23968 -38.66090 -36.83991 -35.03619 -33.59808 -31.59047 -28.97886 -27.81010 -25.14234 -24.34502 -23.65751 -22.27107 -20.88634 -19.65302 -19.26591 -19.00440 -18.76269 -18.47429 -17.21711 -16.53902 -16.17097 -15.81831 -15.45528 -15.31148 -15.09951 -15.06344 -14.98605 -14.68622 -14.63982 -14.58535 -14.33012 -13.65173 -13.37349 -13.24321 -13.08820 -12.69305 -12.54854 -12.51256 -12.18552 -12.14482 -11.94276 -11.80478 -11.72881 -10.93909 -10.63246 -10.29219 -9.37094 -8.21033 -6.35290 1.34557 1.39269 1.43537 1.48358 1.76186 2.19535 2.31729 2.41058 2.77482 2.94578 3.07982 3.14169 3.38368 3.71004 3.82511 4.08393 4.31464 4.40557 4.54741 4.60813 4.85647 4.87516 4.99367 5.04221 5.05142 5.21283 5.37465 5.39202 5.58818 5.80754 6.07258 6.10264 6.73555 7.13321 7.31691 7.73218 8.85129 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.006127 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.297520 B = 4568.485893 C = 5394.066883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 N -0.616 5.616 4 C 0.282 3.718 5 C -0.543 4.543 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.962 3.038 10 H -0.260 1.260 11 H -0.276 1.276 12 H -0.283 1.283 13 C 0.691 3.309 14 O -0.614 6.614 15 N -0.695 5.695 16 C 0.016 3.984 17 C 0.469 3.531 18 F -0.183 7.183 19 F -0.174 7.174 20 F -0.189 7.189 21 C -0.095 4.095 22 C -0.147 4.147 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.027 0.973 29 H -0.002 1.002 30 H 0.267 0.733 31 H 0.417 0.583 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 -8.671 17.841 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.351 5.351 4 C 0.160 3.840 5 C -0.582 4.582 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.200 1.200 12 H -0.209 1.209 13 C 0.392 3.608 14 O -0.493 6.493 15 N -0.355 5.355 16 C -0.076 4.076 17 C 0.413 3.587 18 F -0.164 7.164 19 F -0.155 7.155 20 F -0.170 7.170 21 C -0.131 4.131 22 C -0.186 4.186 23 H 0.115 0.885 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.258 0.742 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.131 0.869 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.407 -7.764 17.605 20.617 hybrid contribution 1.391 0.060 -0.869 1.642 sum -6.016 -7.704 16.735 19.381 Atomic orbital electron populations 1.22142 0.94175 1.03519 1.01816 1.21673 0.95558 0.81445 1.03457 1.47435 1.67856 1.15129 1.04692 1.18578 0.94901 0.91329 0.79192 1.21710 0.98178 1.31952 1.06346 0.93404 1.25785 1.02104 0.94548 0.96459 1.70027 1.37634 1.34178 1.14796 0.85552 0.79367 0.79064 0.77323 1.18409 1.20042 1.20890 1.16213 0.78744 0.84574 0.81239 1.90939 1.52855 1.19051 1.86430 1.44157 1.75652 1.14618 1.01052 1.21192 0.87608 1.09033 0.89778 1.20236 0.89276 0.75106 0.74064 1.93311 1.91607 1.65206 1.66282 1.93140 1.96940 1.86067 1.39386 1.93141 1.73584 1.54136 1.96171 1.23769 0.96742 0.98708 0.93925 1.23558 0.96561 0.96366 1.02084 0.88484 0.92111 0.94201 0.90780 0.89168 0.95540 0.98429 0.92396 0.74190 0.83398 0.84470 0.86850 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.24 71.98 0.74 -2.92 16 2 C 0.10 3.01 5.93 86.38 0.51 3.53 16 3 N -0.62 -26.41 2.46 -844.20 -2.07 -28.48 16 4 C 0.28 15.45 5.16 85.63 0.44 15.89 16 5 C -0.54 -32.22 9.39 25.60 0.24 -31.97 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.60 5.46 84.65 0.46 1.06 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.96 46.33 29.54 68.60 2.03 48.35 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 13 C 0.69 29.61 8.16 179.05 1.46 31.07 16 14 O -0.61 -32.93 13.25 -3.98 -0.05 -32.99 16 15 N -0.69 -20.59 5.30 -438.01 -2.32 -22.91 16 16 C 0.02 0.41 1.97 3.60 0.01 0.41 16 17 C 0.47 15.08 3.16 71.98 0.23 15.30 16 18 F -0.18 -7.92 14.50 44.97 0.65 -7.26 16 19 F -0.17 -4.62 15.90 44.97 0.72 -3.90 16 20 F -0.19 -6.21 17.29 44.97 0.78 -5.44 16 21 C -0.09 -1.25 9.88 30.62 0.30 -0.95 16 22 C -0.15 -3.02 9.92 30.62 0.30 -2.72 16 23 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 27 H 0.09 2.05 6.30 -2.39 -0.02 2.03 16 28 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 29 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.42 9.10 6.53 -92.71 -0.61 8.50 16 32 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.14 1.33 7.61 -2.39 -0.02 1.31 16 34 H 0.11 2.25 7.95 -2.39 -0.02 2.23 16 35 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -79.49 310.91 5.22 -74.27 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.52 Total: 6.33 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 4.70 Total: 28.70 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.11 Total: -108.07 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 9 Polarization: -18.75 SS G_CDS: 2.15 Total: -16.60 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -79.49 5.22 -74.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351689572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.410 kcal (2) G-P(sol) polarization free energy of solvation -79.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds