Wall clock time and date at job start Tue Mar 31 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47214 * 2 1 4 4 C 1.52993 * 109.47259 * 120.00307 * 2 1 3 5 5 N 1.46504 * 109.47239 * 174.99755 * 4 2 1 6 6 C 1.36937 * 119.99904 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99707 * 179.72076 * 6 5 4 9 9 N 1.31624 * 119.99991 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00008 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47127 * 60.00468 * 10 8 6 12 12 H 1.48495 * 109.47666 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47290 * 300.00743 * 10 8 6 14 14 N 1.46509 * 109.46977 * 240.00250 * 2 1 3 15 15 C 1.34777 * 119.99995 * 85.00095 * 14 2 1 16 16 O 1.21281 * 120.00112 * 355.13260 * 15 14 2 17 17 C 1.50692 * 119.99727 * 175.13746 * 15 14 2 18 18 C 1.52998 * 115.55184 * 303.59098 * 17 15 14 19 19 F 1.39897 * 109.47465 * 65.55205 * 18 17 15 20 20 F 1.39903 * 109.47477 * 185.55873 * 18 17 15 21 21 F 1.39906 * 109.46893 * 305.55565 * 18 17 15 22 22 C 1.53005 * 117.50172 * 157.91924 * 17 15 14 23 23 C 1.53009 * 117.50139 * 89.26044 * 17 15 14 24 24 H 1.09001 * 109.47334 * 299.99946 * 1 2 3 25 25 H 1.09002 * 109.47119 * 59.99603 * 1 2 3 26 26 H 1.09002 * 109.47214 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47274 * 54.99581 * 4 2 1 28 28 H 1.09000 * 109.46821 * 294.99643 * 4 2 1 29 29 H 0.97001 * 119.99768 * 0.02562 * 5 4 2 30 30 H 0.97004 * 119.99472 * 179.97438 * 9 8 6 31 31 H 0.96998 * 119.99546 * 265.00329 * 14 2 1 32 32 H 1.09003 * 117.49214 * 359.97438 * 22 17 15 33 33 H 1.08993 * 117.50213 * 145.01810 * 22 17 15 34 34 H 1.09000 * 117.49748 * 214.97583 * 23 17 15 35 35 H 1.08997 * 117.49430 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1839 -1.4381 2.2070 7 1 3.6468 -1.8432 3.0519 8 6 5.5668 -1.5428 2.1486 9 7 6.2208 -1.0539 1.1163 10 14 6.4996 -2.3777 3.5350 11 1 6.0386 -3.7833 3.6656 12 1 7.9538 -2.3592 3.2348 13 1 6.2480 -1.6541 4.8071 14 7 2.0183 -0.6906 -1.1963 15 6 2.1470 -0.0182 -2.3572 16 8 1.7761 1.1339 -2.4351 17 6 2.7516 -0.6980 -3.5585 18 6 4.1530 -1.2767 -3.3535 19 9 4.0948 -2.3222 -2.4259 20 9 4.6405 -1.7611 -4.5722 21 9 5.0055 -0.2758 -2.8751 22 6 2.4193 -0.1234 -4.9372 23 6 1.8052 -1.4536 -4.4936 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6053 -1.7198 1.2951 28 1 1.7517 -0.1583 2.1369 29 1 3.9824 -0.4622 0.4318 30 1 7.1872 -1.1268 1.0757 31 1 2.2489 -1.6318 -1.1527 32 1 1.7630 0.7460 -4.9751 33 1 3.1989 -0.1580 -5.6981 34 1 2.1811 -2.3627 -4.9630 35 1 0.7452 -1.4593 -4.2395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498119275.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:07 Heat of formation + Delta-G solvation = -175.912752 kcal Electronic energy + Delta-G solvation = -23387.299540 eV Core-core repulsion = 19391.625824 eV Total energy + Delta-G solvation = -3995.673715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.17682 -48.72347 -48.65836 -41.28812 -38.36504 -37.25384 -35.49029 -33.09432 -31.58605 -28.29976 -27.42771 -25.14311 -24.31963 -23.66052 -21.97243 -21.42240 -19.87389 -19.37394 -19.29531 -19.08330 -17.38664 -17.25926 -16.68767 -16.03488 -15.82826 -15.52651 -15.40095 -15.26969 -15.21858 -15.07322 -14.98070 -14.82500 -14.69573 -14.01287 -13.65890 -13.54911 -13.38252 -13.10168 -12.75177 -12.69773 -12.59483 -12.21409 -11.96833 -11.95702 -11.86202 -11.71681 -11.13570 -10.93625 -10.18406 -9.01395 -7.92407 -5.23263 1.07487 1.47055 1.50117 1.56233 1.70574 1.91836 2.22639 2.56078 2.68810 2.90680 3.23172 3.37309 3.42135 3.63965 3.72863 3.84281 4.01690 4.26269 4.42355 4.49087 4.54716 4.76483 4.80311 4.84562 4.92366 5.00946 5.08017 5.29616 5.45527 5.51064 6.26045 6.37142 7.00256 7.33477 8.06969 8.30104 9.29501 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.017604 B = 0.006698 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.146901 B = 4179.204901 C = 5327.979914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.138 3.862 3 H 0.061 0.939 4 C 0.143 3.857 5 N -0.745 5.745 6 C -0.248 4.248 7 H 0.080 0.920 8 C -0.073 4.073 9 N -0.964 5.964 10 Si 0.974 3.026 11 H -0.276 1.276 12 H -0.299 1.299 13 H -0.278 1.278 14 N -0.701 5.701 15 C 0.557 3.443 16 O -0.557 6.557 17 C -0.266 4.266 18 C 0.493 3.507 19 F -0.180 7.180 20 F -0.170 7.170 21 F -0.191 7.191 22 C -0.107 4.107 23 C -0.098 4.098 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.372 0.628 30 H 0.248 0.752 31 H 0.408 0.592 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 -2.330 -12.813 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.033 3.967 3 H 0.079 0.921 4 C 0.016 3.984 5 N -0.388 5.388 6 C -0.379 4.379 7 H 0.098 0.902 8 C -0.266 4.266 9 N -0.614 5.614 10 Si 0.803 3.197 11 H -0.202 1.202 12 H -0.226 1.226 13 H -0.204 1.204 14 N -0.351 5.351 15 C 0.342 3.658 16 O -0.436 6.436 17 C -0.271 4.271 18 C 0.439 3.561 19 F -0.162 7.162 20 F -0.151 7.151 21 F -0.173 7.173 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.057 0.943 31 H 0.244 0.756 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.384 -1.614 -12.646 17.773 hybrid contribution 1.746 -0.601 0.811 2.017 sum -10.638 -2.216 -11.835 16.067 Atomic orbital electron populations 1.21995 0.91872 1.03362 1.03042 1.21242 0.95990 0.96000 0.83451 0.92052 1.21175 0.84050 0.98126 0.95004 1.42539 1.01869 1.70063 1.24329 1.19589 0.89903 1.28769 0.99673 0.90168 1.25588 0.97614 1.02982 1.00428 1.69856 1.06923 1.52590 1.32038 0.85218 0.76992 0.78631 0.78900 1.20174 1.22585 1.20442 1.46043 1.65425 1.14657 1.08962 1.19014 0.78024 0.85558 0.83190 1.90666 1.51286 1.17620 1.84033 1.22551 0.94022 1.13984 0.96529 1.19335 0.87151 0.75760 0.73890 1.93219 1.96567 1.59396 1.66976 1.93158 1.89548 1.88489 1.43942 1.93234 1.73858 1.61566 1.88606 1.23378 1.03376 0.99068 0.88544 1.23494 0.98598 0.97319 0.94066 0.89915 0.92390 0.90705 0.94136 0.93959 0.79607 0.94286 0.75572 0.85792 0.85062 0.84481 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.48 71.98 0.68 -2.85 16 2 C 0.14 4.58 2.70 44.99 0.12 4.70 16 3 H 0.06 2.37 7.65 -2.39 -0.02 2.35 16 4 C 0.14 5.47 5.82 86.38 0.50 5.97 16 5 N -0.74 -37.76 5.43 -343.46 -1.87 -39.63 16 6 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 7 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 9 N -0.96 -60.24 13.06 21.65 0.28 -59.96 16 10 Si 0.97 46.55 29.55 68.60 2.03 48.57 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 N -0.70 -23.06 4.41 -442.54 -1.95 -25.02 16 15 C 0.56 18.32 6.92 87.65 0.61 18.93 16 16 O -0.56 -21.05 16.17 -3.03 -0.05 -21.10 16 17 C -0.27 -7.02 2.07 -52.93 -0.11 -7.13 16 18 C 0.49 15.84 3.06 71.98 0.22 16.06 16 19 F -0.18 -6.51 15.96 44.97 0.72 -5.79 16 20 F -0.17 -4.62 15.90 44.97 0.72 -3.91 16 21 F -0.19 -7.75 17.12 44.97 0.77 -6.98 16 22 C -0.11 -1.99 9.47 30.62 0.29 -1.70 16 23 C -0.10 -1.54 9.70 30.62 0.30 -1.25 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.45 8.10 -2.39 -0.02 1.44 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.37 20.75 7.33 -92.71 -0.68 20.07 16 30 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.41 13.36 7.33 -92.71 -0.68 12.68 16 32 H 0.12 2.31 7.84 -2.39 -0.02 2.29 16 33 H 0.13 2.03 7.62 -2.39 -0.02 2.01 16 34 H 0.14 1.64 7.95 -2.39 -0.02 1.62 16 35 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.91 314.30 4.34 -66.57 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.22 Total: 31.22 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 3.92 Total: 16.02 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -3.54 Total: -124.61 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 9 Polarization: -18.88 SS G_CDS: 2.20 Total: -16.68 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -70.91 4.34 -66.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498119275.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.344 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds