Wall clock time and date at job start Tue Mar 31 2020 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47442 * 2 1 4 4 C 1.50705 * 109.47254 * 240.00267 * 2 1 3 5 5 O 1.21284 * 119.99863 * 240.00238 * 4 2 1 6 6 N 1.34771 * 120.00111 * 59.99968 * 4 2 1 7 7 C 1.46493 * 120.00183 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47501 * 180.02562 * 7 6 4 9 9 H 1.08998 * 112.73588 * 55.32964 * 8 7 6 10 10 C 1.53500 * 113.47029 * 186.07959 * 8 7 6 11 11 C 1.53607 * 83.30687 * 140.82561 * 10 8 7 12 12 N 1.47066 * 88.00579 * 333.97983 * 11 10 8 13 13 C 1.36943 * 136.05685 * 207.10789 * 12 11 10 14 14 H 1.07995 * 119.99960 * 173.51000 * 13 12 11 15 15 C 1.38808 * 119.99975 * 353.50248 * 13 12 11 16 16 N 1.31625 * 120.00211 * 5.06348 * 15 13 12 17 17 Si 1.86804 * 120.00265 * 185.05643 * 15 13 12 18 18 H 1.48503 * 109.46997 * 94.98994 * 17 15 13 19 19 H 1.48496 * 109.47326 * 214.99450 * 17 15 13 20 20 H 1.48498 * 109.46652 * 334.99396 * 17 15 13 21 21 C 1.53005 * 109.47282 * 120.00228 * 2 1 3 22 22 F 1.39895 * 109.46923 * 59.99757 * 21 2 1 23 23 F 1.39907 * 109.46759 * 300.00187 * 21 2 1 24 24 F 1.39899 * 109.47315 * 180.02562 * 21 2 1 25 25 H 1.09004 * 109.47097 * 299.99794 * 1 2 3 26 26 H 1.09000 * 109.46899 * 59.99821 * 1 2 3 27 27 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99808 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47596 * 300.00196 * 7 6 4 30 30 H 1.09006 * 109.47264 * 59.99594 * 7 6 4 31 31 H 1.08997 * 114.20041 * 254.43722 * 10 8 7 32 32 H 1.09000 * 114.20511 * 27.25360 * 10 8 7 33 33 H 1.08997 * 113.50792 * 219.18184 * 11 10 8 34 34 H 1.09004 * 113.41024 * 88.75501 * 11 10 8 35 35 H 0.96998 * 120.00461 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1946 -0.9407 -3.6507 8 6 1.6853 -0.2190 -4.9000 9 1 1.9512 0.8379 -4.9137 10 6 2.0194 -0.9505 -6.2075 11 6 0.6085 -0.4969 -6.6115 12 7 0.2638 -0.4691 -5.1821 13 6 -0.8782 -0.6135 -4.4402 14 1 -0.8211 -0.6476 -3.3623 15 6 -2.1090 -0.7158 -5.0737 16 7 -2.1704 -0.7745 -6.3872 17 14 -3.6785 -0.7706 -4.0621 18 1 -4.2458 0.5976 -3.9543 19 1 -4.6630 -1.6640 -4.7237 20 1 -3.3742 -1.2887 -2.7041 21 6 2.0400 -0.7213 1.2492 22 9 1.5736 -2.0402 1.2492 23 9 1.5736 -0.0618 2.3916 24 9 3.4390 -0.7208 1.2495 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.1494 0.5390 -2.5435 29 1 3.2847 -0.9412 -3.6509 30 1 1.8310 -1.9683 -3.6506 31 1 2.8204 -0.4895 -6.7853 32 1 2.1284 -2.0298 -6.1005 33 1 0.0558 -1.2472 -7.1769 34 1 0.5878 0.4861 -7.0822 35 1 -3.0305 -0.8464 -6.8299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499037332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:47 Heat of formation + Delta-G solvation = -140.235612 kcal Electronic energy + Delta-G solvation = -22907.436010 eV Core-core repulsion = 18913.309372 eV Total energy + Delta-G solvation = -3994.126638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.06382 -47.59149 -47.45743 -39.76182 -38.19810 -34.40168 -33.86691 -32.28360 -28.17796 -27.72196 -26.48183 -23.60986 -23.54710 -21.86140 -20.34606 -19.35037 -18.68382 -18.42388 -17.66171 -16.88636 -16.37666 -15.56724 -15.36597 -14.99132 -14.54194 -14.30644 -14.12955 -13.92684 -13.77246 -13.68090 -13.61688 -13.40465 -13.26785 -12.94427 -12.51623 -12.14663 -11.86332 -11.63962 -11.47285 -11.16611 -11.06517 -10.85675 -10.63519 -10.12011 -9.92625 -9.80836 -9.30827 -8.90451 -8.73671 -6.97323 -5.86583 -3.18837 2.55684 2.63776 3.20116 3.31303 3.35847 3.39542 3.66642 4.01543 4.17859 4.35624 4.72406 4.75649 4.87030 5.11269 5.30609 5.40618 5.47931 5.51131 5.62849 5.82984 5.94010 6.00952 6.23446 6.32525 6.51698 6.60056 6.73174 7.15623 7.30448 7.49964 7.62482 7.88229 8.26848 8.93637 9.61412 10.54989 11.31094 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.005614 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.152218 B = 4985.919442 C = 6148.756877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.162 4.162 3 H 0.136 0.864 4 C 0.518 3.482 5 O -0.532 6.532 6 N -0.703 5.703 7 C 0.121 3.879 8 C 0.127 3.873 9 H 0.049 0.951 10 C -0.162 4.162 11 C 0.154 3.846 12 N -0.601 5.601 13 C -0.219 4.219 14 H 0.081 0.919 15 C -0.004 4.004 16 N -0.915 5.915 17 Si 0.905 3.095 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.473 3.527 22 F -0.171 7.171 23 F -0.184 7.184 24 F -0.175 7.175 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.405 0.595 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 4.166 10.208 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 H 0.154 0.846 4 C 0.301 3.699 5 O -0.409 6.409 6 N -0.353 5.353 7 C -0.003 4.003 8 C 0.019 3.981 9 H 0.066 0.934 10 C -0.201 4.201 11 C 0.028 3.972 12 N -0.327 5.327 13 C -0.346 4.346 14 H 0.099 0.901 15 C -0.202 4.202 16 N -0.561 5.561 17 Si 0.735 3.265 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.419 3.581 22 F -0.152 7.152 23 F -0.166 7.166 24 F -0.157 7.157 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.241 0.759 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.911 3.376 10.339 13.449 hybrid contribution -1.181 0.463 0.637 1.420 sum 6.729 3.839 10.976 13.435 Atomic orbital electron populations 1.21879 0.89043 1.05139 1.05005 1.22641 1.01564 1.02784 0.91506 0.84600 1.19673 0.81012 0.84819 0.84405 1.90783 1.37948 1.25650 1.86522 1.45829 1.52460 1.31927 1.05061 1.21902 0.97752 0.97540 0.83130 1.22423 0.87466 0.96383 0.91853 0.93383 1.23700 0.99156 1.00314 0.96913 1.21996 0.89045 0.98150 0.87968 1.45659 1.01593 1.82656 1.02825 1.18835 0.82476 1.43664 0.89594 0.90125 1.24821 0.97371 1.02271 0.95710 1.69842 1.24039 1.55397 1.06806 0.86209 0.83589 0.77472 0.79207 1.21585 1.21650 1.20464 1.19799 0.75803 0.77987 0.84537 1.93209 1.88253 1.37101 1.96643 1.93170 1.88610 1.80914 1.53888 1.93201 1.29412 1.96380 1.96679 0.90155 0.89137 0.90381 0.75949 0.91947 0.90796 0.92246 0.90171 0.91343 0.95525 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.85 37.16 0.33 -1.37 16 2 C -0.16 -1.94 2.71 -91.77 -0.25 -2.19 16 3 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.52 8.09 6.92 -10.99 -0.08 8.01 16 5 O -0.53 -10.24 14.83 5.55 0.08 -10.15 16 6 N -0.70 -10.81 5.30 -60.29 -0.32 -11.13 16 7 C 0.12 2.04 5.52 -4.04 -0.02 2.02 16 8 C 0.13 2.28 4.10 -72.39 -0.30 1.98 16 9 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.16 -2.79 8.04 -26.16 -0.21 -3.00 16 11 C 0.15 3.38 7.31 -8.45 -0.06 3.32 16 12 N -0.60 -13.91 3.65 -176.80 -0.65 -14.55 16 13 C -0.22 -5.56 10.54 -15.06 -0.16 -5.72 16 14 H 0.08 1.93 7.68 -52.49 -0.40 1.53 16 15 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 16 N -0.91 -26.07 11.62 55.49 0.65 -25.43 16 17 Si 0.91 21.02 29.56 -169.99 -5.02 16.00 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 21 C 0.47 6.38 2.42 37.16 0.09 6.47 16 22 F -0.17 -2.67 15.88 2.25 0.04 -2.64 16 23 F -0.18 -2.23 16.80 2.25 0.04 -2.19 16 24 F -0.18 -2.59 16.40 2.25 0.04 -2.55 16 25 H 0.08 0.72 7.80 -51.93 -0.41 0.32 16 26 H 0.09 0.99 7.56 -51.93 -0.39 0.59 16 27 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 28 H 0.41 5.73 7.89 -40.82 -0.32 5.41 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 33 H 0.07 1.69 7.31 -51.93 -0.38 1.31 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -30.90 308.62 -5.65 -36.55 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.40 Total: 2.13 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.75 Total: 9.32 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.32 Total: -51.12 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.11 Total: -7.37 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.90 -5.65 -36.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499037332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.684 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds