Wall clock time and date at job start Tue Mar 31 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47102 * 239.99555 * 2 1 3 5 5 O 1.21280 * 119.99838 * 240.00312 * 4 2 1 6 6 N 1.34780 * 119.99998 * 60.00694 * 4 2 1 7 7 C 1.46500 * 119.99871 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46786 * 179.97438 * 7 6 4 9 9 H 1.08997 * 112.78530 * 303.72872 * 8 7 6 10 10 C 1.53499 * 113.46472 * 172.93553 * 8 7 6 11 11 C 1.53749 * 83.25991 * 218.98716 * 10 8 7 12 12 N 1.47072 * 113.46180 * 74.50654 * 8 7 6 13 13 C 1.36931 * 136.06174 * 321.86155 * 12 8 7 14 14 H 1.08002 * 120.00103 * 0.02562 * 13 12 8 15 15 C 1.38812 * 120.00429 * 180.02562 * 13 12 8 16 16 N 1.31624 * 119.99535 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00542 * 17 15 13 20 20 H 1.48504 * 109.46636 * 60.00101 * 17 15 13 21 21 C 1.53006 * 109.46717 * 119.99673 * 2 1 3 22 22 F 1.39898 * 109.46820 * 179.97438 * 21 2 1 23 23 F 1.39899 * 109.47347 * 299.99749 * 21 2 1 24 24 F 1.39898 * 109.47057 * 60.00015 * 21 2 1 25 25 H 1.09003 * 109.47057 * 60.00110 * 1 2 3 26 26 H 1.09001 * 109.47586 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47535 * 300.00630 * 1 2 3 28 28 H 0.97001 * 119.99969 * 359.97438 * 6 4 2 29 29 H 1.09001 * 109.46704 * 59.99925 * 7 6 4 30 30 H 1.08998 * 109.46915 * 299.99782 * 7 6 4 31 31 H 1.09000 * 114.20984 * 332.74702 * 10 8 7 32 32 H 1.09004 * 114.19718 * 105.37227 * 10 8 7 33 33 H 1.09004 * 113.47201 * 271.50865 * 11 10 8 34 34 H 1.09001 * 113.55046 * 140.98942 * 11 10 8 35 35 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9404 -3.6507 8 6 1.6851 -0.2196 -4.8999 9 1 0.5989 -0.1318 -4.9224 10 6 2.2818 -0.7627 -6.2057 11 6 2.3020 0.7226 -6.6022 12 7 2.3807 1.0478 -5.1700 13 6 2.8776 2.0794 -4.4191 14 1 2.7886 2.0557 -3.3430 15 6 3.4957 3.1556 -5.0407 16 7 3.6037 3.1847 -6.3522 17 14 4.1729 4.5632 -4.0163 18 1 4.7786 5.5808 -4.9122 19 1 3.0711 5.1832 -3.2373 20 1 5.2068 4.0447 -3.0849 21 6 2.0399 -0.7212 1.2494 22 9 3.4389 -0.7217 1.2491 23 9 1.5736 -0.0617 2.3916 24 9 1.5735 -2.0402 1.2494 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.1489 0.5385 -2.5436 29 1 1.8326 -1.9682 -3.6507 30 1 3.2856 -0.9400 -3.6504 31 1 3.2685 -1.2121 -6.0934 32 1 1.5943 -1.3733 -6.7911 33 1 1.3783 1.0588 -7.0735 34 1 3.1911 1.0118 -7.1625 35 1 4.0353 3.9370 -6.7867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499037334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:51 Heat of formation + Delta-G solvation = -139.476685 kcal Electronic energy + Delta-G solvation = -22827.450345 eV Core-core repulsion = 18833.356616 eV Total energy + Delta-G solvation = -3994.093729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.06818 -47.59578 -47.45942 -39.76320 -38.19481 -34.41525 -33.88962 -32.27471 -28.18284 -27.70610 -26.55409 -23.63273 -23.53120 -21.85852 -20.35039 -19.35757 -18.68697 -18.42434 -17.66900 -16.92168 -16.32513 -15.62857 -15.41665 -14.94918 -14.51437 -14.30507 -14.06739 -13.90794 -13.87992 -13.68950 -13.61750 -13.51560 -13.16655 -13.03631 -12.59569 -12.19025 -11.89435 -11.59277 -11.52959 -11.18537 -11.05407 -10.82831 -10.65647 -10.11306 -9.91310 -9.81499 -9.31487 -8.88463 -8.74133 -6.98066 -5.84345 -3.17629 2.56809 2.62601 3.19389 3.32345 3.37492 3.39141 3.65637 3.99962 4.17488 4.36345 4.69044 4.71433 4.88947 5.12628 5.24820 5.32350 5.38725 5.49049 5.62566 5.73647 5.83255 6.00684 6.24361 6.32385 6.52586 6.60363 6.72615 7.14543 7.31536 7.50278 7.62693 7.89658 8.27039 8.94385 9.62375 10.54905 11.32570 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.005416 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.983839 B = 5168.171982 C = 6147.974022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.166 4.166 3 H 0.140 0.860 4 C 0.518 3.482 5 O -0.532 6.532 6 N -0.703 5.703 7 C 0.121 3.879 8 C 0.127 3.873 9 H 0.049 0.951 10 C -0.161 4.161 11 C 0.151 3.849 12 N -0.601 5.601 13 C -0.219 4.219 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.917 5.917 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.474 3.526 22 F -0.172 7.172 23 F -0.184 7.184 24 F -0.173 7.173 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.405 0.595 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -6.542 10.104 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 H 0.158 0.842 4 C 0.302 3.698 5 O -0.409 6.409 6 N -0.353 5.353 7 C -0.003 4.003 8 C 0.019 3.981 9 H 0.066 0.934 10 C -0.200 4.200 11 C 0.025 3.975 12 N -0.327 5.327 13 C -0.346 4.346 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.563 5.563 17 Si 0.738 3.262 18 H -0.215 1.215 19 H -0.212 1.212 20 H -0.210 1.210 21 C 0.419 3.581 22 F -0.154 7.154 23 F -0.166 7.166 24 F -0.155 7.155 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.240 0.760 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.955 -6.929 10.230 14.179 hybrid contribution 0.137 1.321 0.672 1.489 sum -6.818 -5.608 10.902 14.028 Atomic orbital electron populations 1.21830 0.89436 1.04501 1.04865 1.22663 1.01256 1.03332 0.91591 0.84243 1.19643 0.81025 0.84797 0.84376 1.90782 1.37556 1.26034 1.86504 1.45831 1.52588 1.31768 1.05063 1.21900 1.00244 0.95034 0.83104 1.22428 0.95672 0.88074 0.91939 0.93386 1.23707 1.00471 0.98933 0.96849 1.22088 0.99774 0.87683 0.87910 1.45689 1.64773 1.19427 1.02842 1.18764 1.30488 0.95978 0.89347 0.90347 1.24781 1.01202 0.98465 0.95766 1.69815 1.47745 1.31672 1.07087 0.86268 0.78895 0.81991 0.79023 1.21479 1.21168 1.21019 1.19776 0.76026 0.77776 0.84493 1.93224 1.29175 1.96332 1.96641 1.93169 1.88614 1.80903 1.53888 1.93189 1.88317 1.37292 1.96672 0.89581 0.90659 0.90091 0.75979 0.91951 0.90773 0.90148 0.92301 0.95691 0.90893 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.85 37.16 0.33 -1.00 16 2 C -0.17 -1.99 2.71 -91.77 -0.25 -2.23 16 3 H 0.14 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.52 8.13 6.92 -10.99 -0.08 8.05 16 5 O -0.53 -10.26 14.83 5.56 0.08 -10.17 16 6 N -0.70 -10.86 5.23 -60.29 -0.32 -11.18 16 7 C 0.12 2.06 5.52 -4.04 -0.02 2.04 16 8 C 0.13 2.29 4.10 -72.39 -0.30 1.99 16 9 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 10 C -0.16 -2.79 8.04 -26.08 -0.21 -3.00 16 11 C 0.15 3.33 7.41 -8.37 -0.06 3.27 16 12 N -0.60 -14.01 3.65 -176.82 -0.65 -14.65 16 13 C -0.22 -5.62 10.55 -15.06 -0.16 -5.78 16 14 H 0.08 1.90 7.50 -52.49 -0.39 1.50 16 15 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 16 N -0.92 -26.26 11.50 55.49 0.64 -25.62 16 17 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.47 6.39 2.42 37.16 0.09 6.48 16 22 F -0.17 -2.73 16.40 2.25 0.04 -2.69 16 23 F -0.18 -2.22 16.80 2.25 0.04 -2.18 16 24 F -0.17 -2.53 15.88 2.25 0.04 -2.50 16 25 H 0.09 0.67 7.56 -51.93 -0.39 0.28 16 26 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 27 H 0.08 0.59 7.80 -51.93 -0.41 0.19 16 28 H 0.41 5.76 7.79 -40.82 -0.32 5.44 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.82 7.11 -51.93 -0.37 1.45 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 308.04 15.07 4.64 4.64 Total: -1.00 -31.19 308.04 -5.64 -36.83 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.38 Total: 1.64 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -0.75 Total: 9.59 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.32 Total: -51.45 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.11 Total: -7.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.19 -5.64 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499037334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.649 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds