Wall clock time and date at job start Tue Mar 31 2020 02:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47102 * 239.99555 * 2 1 3 5 5 O 1.21280 * 119.99838 * 240.00312 * 4 2 1 6 6 N 1.34780 * 119.99998 * 60.00694 * 4 2 1 7 7 C 1.46500 * 119.99871 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46786 * 179.97438 * 7 6 4 9 9 H 1.08997 * 112.78530 * 303.72872 * 8 7 6 10 10 C 1.53499 * 113.46472 * 172.93553 * 8 7 6 11 11 C 1.53749 * 83.25991 * 218.98716 * 10 8 7 12 12 N 1.47072 * 113.46180 * 74.50654 * 8 7 6 13 13 C 1.36931 * 136.06174 * 321.86155 * 12 8 7 14 14 H 1.08002 * 120.00103 * 0.02562 * 13 12 8 15 15 C 1.38812 * 120.00429 * 180.02562 * 13 12 8 16 16 N 1.31624 * 119.99535 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00542 * 17 15 13 20 20 H 1.48504 * 109.46636 * 60.00101 * 17 15 13 21 21 C 1.53006 * 109.46717 * 119.99673 * 2 1 3 22 22 F 1.39898 * 109.46820 * 179.97438 * 21 2 1 23 23 F 1.39899 * 109.47347 * 299.99749 * 21 2 1 24 24 F 1.39898 * 109.47057 * 60.00015 * 21 2 1 25 25 H 1.09003 * 109.47057 * 60.00110 * 1 2 3 26 26 H 1.09001 * 109.47586 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47535 * 300.00630 * 1 2 3 28 28 H 0.97001 * 119.99969 * 359.97438 * 6 4 2 29 29 H 1.09001 * 109.46704 * 59.99925 * 7 6 4 30 30 H 1.08998 * 109.46915 * 299.99782 * 7 6 4 31 31 H 1.09000 * 114.20984 * 332.74702 * 10 8 7 32 32 H 1.09004 * 114.19718 * 105.37227 * 10 8 7 33 33 H 1.09004 * 113.47201 * 271.50865 * 11 10 8 34 34 H 1.09001 * 113.55046 * 140.98942 * 11 10 8 35 35 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9404 -3.6507 8 6 1.6851 -0.2196 -4.8999 9 1 0.5989 -0.1318 -4.9224 10 6 2.2818 -0.7627 -6.2057 11 6 2.3020 0.7226 -6.6022 12 7 2.3807 1.0478 -5.1700 13 6 2.8776 2.0794 -4.4191 14 1 2.7886 2.0557 -3.3430 15 6 3.4957 3.1556 -5.0407 16 7 3.6037 3.1847 -6.3522 17 14 4.1729 4.5632 -4.0163 18 1 4.7786 5.5808 -4.9122 19 1 3.0711 5.1832 -3.2373 20 1 5.2068 4.0447 -3.0849 21 6 2.0399 -0.7212 1.2494 22 9 3.4389 -0.7217 1.2491 23 9 1.5736 -0.0617 2.3916 24 9 1.5735 -2.0402 1.2494 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.1489 0.5385 -2.5436 29 1 1.8326 -1.9682 -3.6507 30 1 3.2856 -0.9400 -3.6504 31 1 3.2685 -1.2121 -6.0934 32 1 1.5943 -1.3733 -6.7911 33 1 1.3783 1.0588 -7.0735 34 1 3.1911 1.0118 -7.1625 35 1 4.0353 3.9370 -6.7867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499037334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:50 Heat of formation + Delta-G solvation = -160.306629 kcal Electronic energy + Delta-G solvation = -22828.353599 eV Core-core repulsion = 18833.356616 eV Total energy + Delta-G solvation = -3994.996983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.13566 -48.63651 -48.58385 -41.05739 -39.76232 -35.70553 -34.96270 -34.18468 -29.96142 -29.19607 -27.42421 -25.37194 -24.82210 -23.26197 -21.58794 -20.95154 -19.82633 -19.50830 -18.87675 -18.44260 -17.61438 -17.12035 -16.76873 -16.45588 -15.75902 -15.63822 -15.42073 -15.25839 -15.00728 -14.94530 -14.77400 -14.71535 -14.50035 -14.15322 -13.64692 -13.45967 -13.29321 -12.96609 -12.90986 -12.67878 -12.58741 -12.42459 -12.33430 -11.84116 -11.62183 -11.28112 -10.87450 -10.78542 -10.09020 -8.87382 -7.85414 -5.17185 1.42338 1.46150 1.48921 1.52164 1.54037 2.05140 2.48708 2.63895 2.99789 3.09407 3.37281 3.46144 3.66903 3.81374 3.95190 4.00330 4.14570 4.36739 4.62693 4.64269 4.68594 4.71581 4.88897 5.08072 5.09130 5.11905 5.34347 5.37610 5.60753 5.76125 5.98961 6.40112 6.94761 7.06143 7.66639 8.66086 9.32129 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.005416 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.983839 B = 5168.171982 C = 6147.974022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.158 4.158 3 H 0.161 0.839 4 C 0.516 3.484 5 O -0.572 6.572 6 N -0.698 5.698 7 C 0.130 3.870 8 C 0.135 3.865 9 H 0.075 0.925 10 C -0.136 4.136 11 C 0.141 3.859 12 N -0.629 5.629 13 C -0.208 4.208 14 H 0.092 0.908 15 C -0.072 4.072 16 N -0.955 5.955 17 Si 0.966 3.034 18 H -0.302 1.302 19 H -0.270 1.270 20 H -0.284 1.284 21 C 0.470 3.530 22 F -0.190 7.190 23 F -0.174 7.174 24 F -0.182 7.182 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.413 0.587 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 -6.881 11.422 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 H 0.178 0.822 4 C 0.301 3.699 5 O -0.452 6.452 6 N -0.349 5.349 7 C 0.005 3.995 8 C 0.029 3.971 9 H 0.092 0.908 10 C -0.175 4.175 11 C 0.015 3.985 12 N -0.355 5.355 13 C -0.336 4.336 14 H 0.109 0.891 15 C -0.264 4.264 16 N -0.605 5.605 17 Si 0.795 3.205 18 H -0.228 1.228 19 H -0.195 1.195 20 H -0.210 1.210 21 C 0.415 3.585 22 F -0.172 7.172 23 F -0.155 7.155 24 F -0.164 7.164 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.250 0.750 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.750 -7.283 11.578 16.237 hybrid contribution 0.649 1.336 0.282 1.512 sum -8.102 -5.947 11.860 15.545 Atomic orbital electron populations 1.21913 0.86729 1.04930 1.06681 1.22711 1.03308 1.03304 0.88655 0.82172 1.20208 0.80115 0.84311 0.85249 1.90767 1.39320 1.27963 1.87128 1.45766 1.52450 1.31895 1.04743 1.21667 0.98361 0.96111 0.83366 1.22566 0.96430 0.85390 0.92715 0.90799 1.23532 1.01349 0.96242 0.96377 1.22104 0.97955 0.91129 0.87269 1.46005 1.65538 1.20392 1.03585 1.19205 1.28354 0.95805 0.90260 0.89059 1.25540 1.02969 1.01237 0.96676 1.70008 1.49821 1.32015 1.08606 0.85328 0.78454 0.79234 0.77445 1.22842 1.19530 1.21034 1.20040 0.75259 0.77672 0.85494 1.93189 1.30788 1.96400 1.96782 1.93187 1.88345 1.80567 1.53449 1.93170 1.88293 1.38122 1.96771 0.88020 0.90960 0.88035 0.75025 0.89957 0.93906 0.90466 0.88233 0.95816 0.94769 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.85 71.98 0.64 -1.43 16 2 C -0.16 -3.36 2.71 -11.54 -0.03 -3.39 16 3 H 0.16 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.52 15.18 6.92 87.66 0.61 15.79 16 5 O -0.57 -21.55 14.83 -3.03 -0.04 -21.59 16 6 N -0.70 -19.87 5.23 -463.06 -2.42 -22.29 16 7 C 0.13 4.13 5.52 86.38 0.48 4.60 16 8 C 0.14 4.54 4.10 41.79 0.17 4.71 16 9 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 10 C -0.14 -4.42 8.04 31.01 0.25 -4.17 16 11 C 0.14 6.19 7.41 83.26 0.62 6.81 16 12 N -0.63 -28.72 3.65 -713.34 -2.60 -31.32 16 13 C -0.21 -10.54 10.55 84.03 0.89 -9.65 16 14 H 0.09 4.25 7.50 -2.91 -0.02 4.23 16 15 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 16 N -0.95 -56.16 11.50 21.65 0.25 -55.92 16 17 Si 0.97 43.99 29.55 68.60 2.03 46.02 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 C 0.47 11.85 2.42 71.98 0.17 12.03 16 22 F -0.19 -5.86 16.40 44.97 0.74 -5.12 16 23 F -0.17 -3.79 16.80 44.97 0.76 -3.04 16 24 F -0.18 -5.09 15.88 44.97 0.71 -4.38 16 25 H 0.10 1.16 7.56 -2.39 -0.02 1.14 16 26 H 0.07 1.10 7.80 -2.39 -0.02 1.09 16 27 H 0.10 1.08 7.80 -2.39 -0.02 1.06 16 28 H 0.41 10.44 7.79 -92.71 -0.72 9.71 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.57 8.12 -2.39 -0.02 2.55 16 32 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.03 1.75 7.11 -2.39 -0.02 1.73 16 35 H 0.24 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -68.80 308.04 4.07 -64.73 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.40 Total: 11.04 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 4.25 Total: 21.87 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -4.77 Total: -109.53 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.04 Total: -21.59 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 2.21 Total: -12.53 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.80 4.07 -64.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499037334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.574 kcal (2) G-P(sol) polarization free energy of solvation -68.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds