Wall clock time and date at job start Tue Mar 31 2020 02:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46807 * 2 1 4 4 C 1.50697 * 109.47272 * 119.99636 * 2 1 3 5 5 O 1.21284 * 120.00179 * 120.00576 * 4 2 1 6 6 N 1.34775 * 120.00098 * 300.00587 * 4 2 1 7 7 C 1.46501 * 120.00166 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47368 * 179.97438 * 7 6 4 9 9 H 1.09000 * 112.73927 * 303.76875 * 8 7 6 10 10 C 1.53500 * 113.46945 * 172.94110 * 8 7 6 11 11 C 1.53753 * 83.25770 * 218.98859 * 10 8 7 12 12 N 1.47065 * 113.46383 * 74.50609 * 8 7 6 13 13 C 1.36937 * 136.06336 * 321.86727 * 12 8 7 14 14 H 1.08007 * 119.99300 * 6.42678 * 13 12 8 15 15 C 1.38807 * 120.00416 * 186.42437 * 13 12 8 16 16 N 1.31621 * 120.00185 * 354.92341 * 15 13 12 17 17 Si 1.86806 * 120.00036 * 174.92672 * 15 13 12 18 18 H 1.48499 * 109.47102 * 275.00870 * 17 15 13 19 19 H 1.48505 * 109.46946 * 35.00945 * 17 15 13 20 20 H 1.48497 * 109.46972 * 155.00652 * 17 15 13 21 21 C 1.52994 * 109.47712 * 240.00218 * 2 1 3 22 22 F 1.39907 * 109.47003 * 299.99836 * 21 2 1 23 23 F 1.39904 * 109.47462 * 59.99390 * 21 2 1 24 24 F 1.39904 * 109.47452 * 179.97438 * 21 2 1 25 25 H 1.09009 * 109.46807 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47711 * 300.00059 * 1 2 3 27 27 H 1.09001 * 109.47294 * 60.00548 * 1 2 3 28 28 H 0.96994 * 120.00250 * 359.97438 * 6 4 2 29 29 H 1.09007 * 109.46644 * 60.00301 * 7 6 4 30 30 H 1.08996 * 109.47182 * 300.00493 * 7 6 4 31 31 H 1.09002 * 114.20379 * 332.74570 * 10 8 7 32 32 H 1.08997 * 114.20196 * 105.36828 * 10 8 7 33 33 H 1.09007 * 113.46644 * 271.50393 * 11 10 8 34 34 H 1.08998 * 113.55192 * 140.98865 * 11 10 8 35 35 H 0.96999 * 120.00242 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1945 -0.9407 3.6508 8 6 1.6851 -0.2191 4.9000 9 1 1.9643 0.8344 4.9213 10 6 1.9983 -0.9625 6.2059 11 6 0.5911 -0.4864 6.6023 12 7 0.2584 -0.4524 5.1701 13 6 -0.8799 -0.5771 4.4192 14 1 -0.8153 -0.6049 3.3414 15 6 -2.1165 -0.6678 5.0430 16 7 -2.1882 -0.7346 6.3556 17 14 -3.6791 -0.6950 4.0197 18 1 -4.0947 0.6974 3.7136 19 1 -3.4280 -1.4267 2.7521 20 1 -4.7568 -1.3774 4.7800 21 6 2.0401 -0.7211 -1.2492 22 9 1.5738 -2.0402 -1.2492 23 9 1.5737 -0.0617 -2.3915 24 9 3.4391 -0.7206 -1.2494 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.1492 0.5389 2.5436 29 1 3.2846 -0.9410 3.6509 30 1 1.8310 -1.9682 3.6506 31 1 2.0932 -2.0426 6.0936 32 1 2.8031 -0.5179 6.7912 33 1 0.5821 0.4965 7.0735 34 1 0.0221 -1.2282 7.1626 35 1 -3.0524 -0.7976 6.7915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499037335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:53 Heat of formation + Delta-G solvation = -140.009456 kcal Electronic energy + Delta-G solvation = -22916.729970 eV Core-core repulsion = 18922.613139 eV Total energy + Delta-G solvation = -3994.116832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.06119 -47.58948 -47.45397 -39.75976 -38.19305 -34.39728 -33.86334 -32.28451 -28.18098 -27.71301 -26.47969 -23.60762 -23.54295 -21.85994 -20.34084 -19.35627 -18.68298 -18.42186 -17.66022 -16.88751 -16.37640 -15.56361 -15.36171 -14.98731 -14.53977 -14.30539 -14.12862 -13.92507 -13.77212 -13.67890 -13.61496 -13.39896 -13.26225 -12.93984 -12.51411 -12.14420 -11.86584 -11.63880 -11.47135 -11.16350 -11.06058 -10.85262 -10.64449 -10.12139 -9.92639 -9.80541 -9.30839 -8.90377 -8.73280 -6.97473 -5.86548 -3.18827 2.55900 2.64015 3.20370 3.31215 3.35814 3.39126 3.66874 4.01683 4.18041 4.35659 4.72670 4.75901 4.87214 5.11421 5.30698 5.40923 5.47827 5.51383 5.62903 5.83020 5.94202 6.01037 6.23574 6.32334 6.52155 6.60305 6.73112 7.15468 7.30242 7.49900 7.62878 7.88227 8.27148 8.93486 9.61358 10.54953 11.31038 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.005642 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.998703 B = 4961.718555 C = 6130.457732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.162 4.162 3 H 0.136 0.864 4 C 0.518 3.482 5 O -0.532 6.532 6 N -0.703 5.703 7 C 0.121 3.879 8 C 0.126 3.874 9 H 0.049 0.951 10 C -0.161 4.161 11 C 0.154 3.846 12 N -0.601 5.601 13 C -0.219 4.219 14 H 0.081 0.919 15 C -0.004 4.004 16 N -0.915 5.915 17 Si 0.905 3.095 18 H -0.288 1.288 19 H -0.280 1.280 20 H -0.290 1.290 21 C 0.473 3.527 22 F -0.171 7.171 23 F -0.184 7.184 24 F -0.175 7.175 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.406 0.594 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 4.045 -10.104 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 H 0.154 0.846 4 C 0.301 3.699 5 O -0.409 6.409 6 N -0.353 5.353 7 C -0.003 4.003 8 C 0.018 3.982 9 H 0.066 0.934 10 C -0.200 4.200 11 C 0.028 3.972 12 N -0.327 5.327 13 C -0.346 4.346 14 H 0.098 0.902 15 C -0.201 4.201 16 N -0.561 5.561 17 Si 0.735 3.265 18 H -0.215 1.215 19 H -0.206 1.206 20 H -0.216 1.216 21 C 0.419 3.581 22 F -0.152 7.152 23 F -0.166 7.166 24 F -0.157 7.157 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.241 0.759 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.912 3.256 -10.235 13.340 hybrid contribution -1.175 0.487 -0.651 1.429 sum 6.737 3.744 -10.886 13.339 Atomic orbital electron populations 1.21882 0.89047 1.05140 1.05015 1.22638 1.01566 1.02787 0.91505 0.84599 1.19672 0.81012 0.84818 0.84406 1.90782 1.37951 1.25660 1.86525 1.45831 1.52449 1.31937 1.05051 1.21898 0.97737 0.97523 0.83140 1.22428 0.87479 0.96379 0.91885 0.93390 1.23722 0.99162 1.00265 0.96880 1.22032 0.89251 0.98013 0.87879 1.45680 1.01177 1.83016 1.02843 1.18815 0.82436 1.43931 0.89452 0.90154 1.24817 0.97348 1.02260 0.95723 1.69836 1.23795 1.55348 1.07101 0.86254 0.83387 0.77623 0.79254 1.21482 1.20564 1.21599 1.19800 0.75803 0.77985 0.84535 1.93212 1.88259 1.37095 1.96646 1.93169 1.88611 1.80919 1.53880 1.93202 1.29413 1.96380 1.96679 0.90376 0.89122 0.90157 0.75930 0.91959 0.90814 0.90168 0.92293 0.95534 0.91284 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.85 37.15 0.33 -1.38 16 2 C -0.16 -1.95 2.71 -91.78 -0.25 -2.20 16 3 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 4 C 0.52 8.11 6.92 -10.99 -0.08 8.03 16 5 O -0.53 -10.25 14.83 5.55 0.08 -10.16 16 6 N -0.70 -10.84 5.22 -60.29 -0.31 -11.16 16 7 C 0.12 2.05 5.52 -4.04 -0.02 2.03 16 8 C 0.13 2.27 4.10 -72.40 -0.30 1.98 16 9 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.16 -2.79 8.04 -26.08 -0.21 -3.00 16 11 C 0.15 3.38 7.33 -8.37 -0.06 3.32 16 12 N -0.60 -13.90 3.65 -176.83 -0.64 -14.54 16 13 C -0.22 -5.56 10.54 -15.06 -0.16 -5.72 16 14 H 0.08 1.92 7.61 -52.48 -0.40 1.52 16 15 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 16 N -0.91 -26.05 11.61 55.49 0.64 -25.40 16 17 Si 0.90 20.98 29.56 -169.99 -5.02 15.96 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.47 6.39 2.42 37.15 0.09 6.48 16 22 F -0.17 -2.67 15.88 2.25 0.04 -2.64 16 23 F -0.18 -2.23 16.80 2.25 0.04 -2.19 16 24 F -0.18 -2.59 16.40 2.25 0.04 -2.55 16 25 H 0.08 0.99 7.80 -51.92 -0.41 0.59 16 26 H 0.09 0.99 7.56 -51.93 -0.39 0.60 16 27 H 0.08 0.73 7.80 -51.93 -0.41 0.32 16 28 H 0.41 5.77 7.89 -40.82 -0.32 5.44 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.39 8.12 -51.93 -0.42 0.96 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.71 7.30 -51.93 -0.38 1.33 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -30.84 308.46 -5.65 -36.49 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.40 Total: 2.23 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -0.75 Total: 9.33 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.32 Total: -51.10 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.11 Total: -7.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.84 -5.65 -36.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499037335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.522 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds