Wall clock time and date at job start Tue Mar 31 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47047 * 2 1 4 4 H 1.08991 * 109.47024 * 305.37750 * 3 2 1 5 5 C 1.50700 * 109.47118 * 185.37597 * 3 2 1 6 6 H 1.08000 * 119.99723 * 244.80432 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.80007 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.04138 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.04704 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46497 * 109.46925 * 65.37669 * 3 2 1 14 14 C 1.34778 * 120.00112 * 274.99863 * 13 3 2 15 15 O 1.21516 * 119.99988 * 0.02562 * 14 13 3 16 16 C 1.48068 * 120.00320 * 179.97438 * 14 13 3 17 17 C 1.36180 * 119.72140 * 179.73020 * 16 14 13 18 18 C 1.41625 * 119.18979 * 179.76755 * 17 16 14 19 19 O 1.22262 * 120.65799 * 180.21648 * 18 17 16 20 20 C 1.41581 * 118.68904 * 0.47673 * 18 17 16 21 21 O 1.36007 * 120.31304 * 179.74409 * 20 18 17 22 22 C 1.42900 * 116.99907 * 180.02562 * 21 20 18 23 23 C 1.35854 * 119.37189 * 359.76264 * 20 18 17 24 24 N 1.35443 * 120.77639 * 0.02562 * 23 20 18 25 25 H 0.96993 * 119.29312 * 179.97438 * 24 23 20 26 26 H 1.09001 * 109.47500 * 299.99859 * 1 2 3 27 27 H 1.09005 * 109.47288 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47797 * 59.99856 * 1 2 3 29 29 H 1.09001 * 109.47446 * 120.00460 * 2 1 3 30 30 H 1.09000 * 109.47045 * 240.00415 * 2 1 3 31 31 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00190 * 95.00124 * 13 3 2 33 33 H 1.08006 * 120.40260 * 359.97438 * 17 16 14 34 34 H 1.08995 * 109.47060 * 60.00339 * 22 21 20 35 35 H 1.09001 * 109.46979 * 179.97438 * 22 21 20 36 36 H 1.09000 * 109.47510 * 299.99964 * 22 21 20 37 37 H 1.07997 * 119.61170 * 180.02562 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 3.5410 1.4447 -0.1331 6 1 4.1542 1.8170 0.6742 7 6 4.1316 0.9712 -1.2855 8 7 3.3876 0.6476 -2.3206 9 14 5.9885 0.7893 -1.3766 10 1 6.3862 -0.5217 -0.8037 11 1 6.4240 0.8625 -2.7944 12 1 6.6314 1.8825 -0.6042 13 7 1.6601 2.0947 1.2556 14 6 0.4435 2.6614 1.3796 15 8 -0.3385 2.6309 0.4500 16 6 0.0594 3.3201 2.6488 17 6 -1.1693 3.8956 2.7659 18 6 -1.5268 4.5182 3.9867 19 8 -2.6243 5.0397 4.1225 20 6 -0.5863 4.5297 5.0448 21 8 -0.8931 5.1230 6.2296 22 6 0.1086 5.0937 7.2484 23 6 0.6258 3.9428 4.8654 24 7 0.9415 3.3501 3.6891 25 1 1.8132 2.9379 3.5844 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8031 0.3142 -3.1312 32 1 2.2842 2.1188 1.9978 33 1 -1.8637 3.8745 1.9390 34 1 1.0052 5.5999 6.8909 35 1 -0.2638 5.6005 8.1386 36 1 0.3484 4.0588 7.4925 37 1 1.3460 3.9490 5.6701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521321705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:17 Heat of formation + Delta-G solvation = -73.526346 kcal Electronic energy + Delta-G solvation = -21814.917621 eV Core-core repulsion = 18365.540454 eV Total energy + Delta-G solvation = -3449.377167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35900 -39.47994 -38.06047 -37.54431 -35.43434 -32.71899 -31.62060 -31.33900 -30.41740 -27.86436 -27.19710 -24.49126 -23.27657 -22.95527 -20.95600 -19.85049 -19.63202 -18.14194 -17.69947 -16.34563 -16.19785 -16.16831 -15.61252 -15.13699 -15.06969 -14.55929 -14.47505 -14.20177 -13.98979 -13.38599 -13.13507 -12.86331 -12.74260 -12.31144 -11.73975 -11.70179 -11.55345 -11.50450 -11.18328 -10.95673 -10.54810 -10.41125 -9.93803 -9.73119 -9.38849 -9.37664 -9.30833 -8.68425 -8.22390 -7.71422 -6.30861 -4.39456 0.80866 1.12744 2.56548 3.10561 3.13487 3.16818 3.20636 3.22144 3.44115 3.80393 4.19786 4.28705 4.55941 4.82518 4.88087 4.90500 5.02429 5.02822 5.22645 5.50204 5.79001 6.15965 6.19429 6.22633 6.42057 6.52543 6.65074 6.80994 6.96607 7.00316 7.08027 7.14402 7.35734 7.48901 7.61403 7.86271 8.04332 8.24219 8.47124 8.69948 9.27230 10.76790 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.004131 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.408720 B = 6776.350142 C = 7534.437122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.268 3.732 4 H 0.062 0.938 5 C -0.544 4.544 6 H 0.061 0.939 7 C 0.071 3.929 8 N -0.876 5.876 9 Si 0.901 3.099 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.540 3.460 15 O -0.507 6.507 16 C 0.134 3.866 17 C -0.223 4.223 18 C 0.401 3.599 19 O -0.505 6.505 20 C -0.039 4.039 21 O -0.290 6.290 22 C 0.018 3.982 23 C 0.030 3.970 24 N -0.562 5.562 25 H 0.421 0.579 26 H 0.039 0.961 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.267 0.733 32 H 0.383 0.617 33 H 0.168 0.832 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 3.207 15.089 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.168 3.832 4 H 0.079 0.921 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.512 5.512 9 Si 0.728 3.272 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.346 5.346 14 C 0.322 3.678 15 O -0.382 6.382 16 C 0.021 3.979 17 C -0.250 4.250 18 C 0.292 3.708 19 O -0.389 6.389 20 C -0.090 4.090 21 O -0.201 6.201 22 C -0.077 4.077 23 C -0.098 4.098 24 N -0.176 5.176 25 H 0.259 0.741 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.215 0.785 33 H 0.186 0.814 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.861 3.487 14.316 14.760 hybrid contribution 2.225 -0.467 0.453 2.318 sum 1.364 3.021 14.770 15.137 Atomic orbital electron populations 1.21874 0.97895 0.98662 1.01489 1.21881 0.93036 0.99438 1.01706 1.18974 0.94900 0.89207 0.80149 0.92070 1.21096 0.90165 1.44497 1.02464 0.92045 1.24877 0.98669 0.94818 0.94979 1.69953 1.35628 1.42336 1.03325 0.86481 0.84625 0.78636 0.77484 1.20357 1.21015 1.19910 1.46567 1.13575 1.55384 1.19031 1.17891 0.83798 0.80210 0.85876 1.90841 1.50676 1.58407 1.38277 1.20892 0.91331 0.97475 0.88219 1.22433 0.96671 1.04896 1.00996 1.16818 0.87182 0.81072 0.85761 1.90834 1.22558 1.42144 1.83401 1.20436 0.95445 1.03070 0.90094 1.86269 1.40805 1.73251 1.19801 1.23108 0.92150 1.01736 0.90722 1.21632 0.98148 1.00046 0.89934 1.40801 1.17295 1.49373 1.10104 0.74124 0.94209 0.95367 0.92732 0.94594 0.89512 0.92282 0.78455 0.81418 0.92806 0.88070 0.92820 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.15 0.32 -2.55 16 2 C -0.12 -2.63 5.49 -26.73 -0.15 -2.78 16 3 C 0.27 6.00 2.11 -69.08 -0.15 5.85 16 4 H 0.06 1.62 7.55 -51.93 -0.39 1.23 16 5 C -0.54 -12.92 8.67 -34.44 -0.30 -13.22 16 6 H 0.06 1.37 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.77 5.19 -17.82 -0.09 1.68 16 8 N -0.88 -23.12 12.00 55.43 0.67 -22.45 16 9 Si 0.90 19.12 29.54 -169.99 -5.02 14.10 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 N -0.70 -12.06 5.02 -55.81 -0.28 -12.34 16 14 C 0.54 9.39 6.39 -12.23 -0.08 9.31 16 15 O -0.51 -10.67 13.41 5.35 0.07 -10.60 16 16 C 0.13 1.89 6.77 -82.53 -0.56 1.33 16 17 C -0.22 -3.53 9.53 -39.03 -0.37 -3.90 16 18 C 0.40 6.73 6.78 -37.02 -0.25 6.48 16 19 O -0.50 -10.33 17.71 -11.15 -0.20 -10.53 16 20 C -0.04 -0.52 6.71 -39.16 -0.26 -0.78 16 21 O -0.29 -3.74 10.33 -35.59 -0.37 -4.11 16 22 C 0.02 0.13 9.81 101.05 0.99 1.12 16 23 C 0.03 0.28 10.22 -16.81 -0.17 0.11 16 24 N -0.56 -5.62 5.26 -9.58 -0.05 -5.67 16 25 H 0.42 3.04 7.00 -40.82 -0.29 2.76 16 26 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 1.19 7.87 -51.93 -0.41 0.78 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.11 6.64 -51.93 -0.34 1.76 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.38 5.21 6.74 -40.82 -0.28 4.93 16 33 H 0.17 2.78 7.58 -52.48 -0.40 2.38 16 34 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 37 H 0.17 0.85 6.21 -52.49 -0.33 0.52 16 LS Contribution 311.78 15.07 4.70 4.70 Total: -1.00 -32.38 311.78 -5.88 -38.26 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.33 Total: 6.00 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.07 Total: 2.65 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.33 Total: -40.47 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.49 Total: -25.24 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.38 -5.88 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521321705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.266 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds