Wall clock time and date at job start Tue Mar 31 2020 01:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47047 * 2 1 4 4 H 1.08991 * 109.47024 * 305.37750 * 3 2 1 5 5 C 1.50700 * 109.47118 * 185.37597 * 3 2 1 6 6 H 1.08000 * 119.99723 * 244.80432 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.80007 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.04138 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.04704 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46497 * 109.46925 * 65.37669 * 3 2 1 14 14 C 1.34778 * 120.00112 * 274.99863 * 13 3 2 15 15 O 1.21516 * 119.99988 * 0.02562 * 14 13 3 16 16 C 1.48068 * 120.00320 * 179.97438 * 14 13 3 17 17 C 1.36180 * 119.72140 * 179.73020 * 16 14 13 18 18 C 1.41625 * 119.18979 * 179.76755 * 17 16 14 19 19 O 1.22262 * 120.65799 * 180.21648 * 18 17 16 20 20 C 1.41581 * 118.68904 * 0.47673 * 18 17 16 21 21 O 1.36007 * 120.31304 * 179.74409 * 20 18 17 22 22 C 1.42900 * 116.99907 * 180.02562 * 21 20 18 23 23 C 1.35854 * 119.37189 * 359.76264 * 20 18 17 24 24 N 1.35443 * 120.77639 * 0.02562 * 23 20 18 25 25 H 0.96993 * 119.29312 * 179.97438 * 24 23 20 26 26 H 1.09001 * 109.47500 * 299.99859 * 1 2 3 27 27 H 1.09005 * 109.47288 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47797 * 59.99856 * 1 2 3 29 29 H 1.09001 * 109.47446 * 120.00460 * 2 1 3 30 30 H 1.09000 * 109.47045 * 240.00415 * 2 1 3 31 31 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00190 * 95.00124 * 13 3 2 33 33 H 1.08006 * 120.40260 * 359.97438 * 17 16 14 34 34 H 1.08995 * 109.47060 * 60.00339 * 22 21 20 35 35 H 1.09001 * 109.46979 * 179.97438 * 22 21 20 36 36 H 1.09000 * 109.47510 * 299.99964 * 22 21 20 37 37 H 1.07997 * 119.61170 * 180.02562 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 3.5410 1.4447 -0.1331 6 1 4.1542 1.8170 0.6742 7 6 4.1316 0.9712 -1.2855 8 7 3.3876 0.6476 -2.3206 9 14 5.9885 0.7893 -1.3766 10 1 6.3862 -0.5217 -0.8037 11 1 6.4240 0.8625 -2.7944 12 1 6.6314 1.8825 -0.6042 13 7 1.6601 2.0947 1.2556 14 6 0.4435 2.6614 1.3796 15 8 -0.3385 2.6309 0.4500 16 6 0.0594 3.3201 2.6488 17 6 -1.1693 3.8956 2.7659 18 6 -1.5268 4.5182 3.9867 19 8 -2.6243 5.0397 4.1225 20 6 -0.5863 4.5297 5.0448 21 8 -0.8931 5.1230 6.2296 22 6 0.1086 5.0937 7.2484 23 6 0.6258 3.9428 4.8654 24 7 0.9415 3.3501 3.6891 25 1 1.8132 2.9379 3.5844 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8031 0.3142 -3.1312 32 1 2.2842 2.1188 1.9978 33 1 -1.8637 3.8745 1.9390 34 1 1.0052 5.5999 6.8909 35 1 -0.2638 5.6005 8.1386 36 1 0.3484 4.0588 7.4925 37 1 1.3460 3.9490 5.6701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521321705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:16 Heat of formation + Delta-G solvation = -97.369775 kcal Electronic energy + Delta-G solvation = -21815.951550 eV Core-core repulsion = 18365.540454 eV Total energy + Delta-G solvation = -3450.411096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.49062 -40.81676 -39.07030 -38.76329 -37.12062 -34.44526 -33.14816 -32.64508 -31.57852 -29.08886 -28.33774 -25.88285 -24.76785 -24.12870 -22.41950 -21.43166 -20.79757 -19.42257 -18.78558 -17.91449 -17.31772 -17.26403 -17.08995 -16.47033 -16.45008 -15.92092 -15.53517 -15.36674 -15.18595 -14.72005 -14.57990 -14.36087 -13.87632 -13.79241 -13.48006 -13.26052 -12.93494 -12.62728 -12.36931 -12.24637 -12.21577 -12.11021 -11.64667 -11.26266 -11.10726 -10.68653 -10.54157 -10.48990 -9.85410 -8.76670 -8.18208 -6.32724 -0.45058 0.14983 1.48645 1.49120 1.54075 1.58357 1.79961 2.00033 2.33633 2.45625 2.59979 3.15233 3.50078 3.60501 3.68439 3.87521 4.37026 4.45825 4.47379 4.49915 4.53553 4.63510 4.72046 4.84043 5.03692 5.05224 5.22602 5.33677 5.38220 5.43903 5.59379 5.72722 5.79979 5.85189 6.04589 6.28823 6.66280 6.75107 6.91962 7.16090 7.39921 8.89844 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.004131 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.408720 B = 6776.350142 C = 7534.437122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 C 0.276 3.724 4 H 0.010 0.990 5 C -0.548 4.548 6 H 0.082 0.918 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.295 1.295 12 H -0.261 1.261 13 N -0.685 5.685 14 C 0.543 3.457 15 O -0.548 6.548 16 C 0.151 3.849 17 C -0.237 4.237 18 C 0.381 3.619 19 O -0.570 6.570 20 C -0.061 4.061 21 O -0.323 6.323 22 C 0.005 3.995 23 C 0.075 3.925 24 N -0.533 5.533 25 H 0.442 0.558 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.264 0.736 32 H 0.405 0.595 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 2.745 18.214 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C 0.173 3.827 4 H 0.028 0.972 5 C -0.586 4.586 6 H 0.100 0.900 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.335 5.335 14 C 0.327 3.673 15 O -0.425 6.425 16 C 0.036 3.964 17 C -0.264 4.264 18 C 0.277 3.723 19 O -0.460 6.460 20 C -0.112 4.112 21 O -0.236 6.236 22 C -0.089 4.089 23 C -0.054 4.054 24 N -0.146 5.146 25 H 0.283 0.717 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.242 0.758 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.511 3.010 17.498 17.932 hybrid contribution 1.282 -0.328 -0.470 1.405 sum 3.793 2.682 17.028 17.650 Atomic orbital electron populations 1.21743 0.96993 0.99615 1.00471 1.21740 0.93732 0.98805 1.01119 1.18548 0.94298 0.89249 0.80598 0.97167 1.21516 0.90885 1.43469 1.02749 0.90000 1.25730 1.02907 0.94749 0.94796 1.70112 1.37463 1.43807 1.03950 0.85444 0.79470 0.79050 0.76886 1.19662 1.22114 1.18503 1.46165 1.14079 1.54945 1.18335 1.18174 0.83153 0.79554 0.86418 1.90840 1.51860 1.59650 1.40139 1.20150 0.91294 0.97040 0.87910 1.22248 0.97275 1.06121 1.00801 1.17222 0.87394 0.80683 0.87007 1.90791 1.25033 1.45696 1.84526 1.20091 0.95952 1.05068 0.90059 1.86231 1.43539 1.73493 1.20319 1.23519 0.91894 1.03844 0.89651 1.22324 0.97400 0.95800 0.89829 1.40904 1.17117 1.47452 1.09177 0.71678 0.93575 0.93330 0.95404 0.92614 0.92473 0.92667 0.75797 0.83626 0.90474 0.86987 0.90379 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.52 71.98 0.61 -4.68 16 2 C -0.11 -4.94 5.49 30.59 0.17 -4.77 16 3 C 0.28 12.25 2.11 44.25 0.09 12.34 16 4 H 0.01 0.57 7.55 -2.39 -0.02 0.55 16 5 C -0.55 -25.21 8.67 25.60 0.22 -24.98 16 6 H 0.08 3.35 7.73 -2.91 -0.02 3.32 16 7 C 0.02 0.94 5.19 84.65 0.44 1.38 16 8 N -0.92 -49.27 12.00 21.45 0.26 -49.01 16 9 Si 0.97 38.24 29.54 68.60 2.03 40.26 16 10 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 13 N -0.69 -22.40 5.02 -448.78 -2.25 -24.65 16 14 C 0.54 18.50 6.39 86.85 0.55 19.05 16 15 O -0.55 -23.79 13.41 -3.77 -0.05 -23.84 16 16 C 0.15 4.02 6.77 40.56 0.27 4.29 16 17 C -0.24 -7.69 9.53 22.63 0.22 -7.48 16 18 C 0.38 13.11 6.78 23.93 0.16 13.28 16 19 O -0.57 -24.95 17.71 8.96 0.16 -24.80 16 20 C -0.06 -1.51 6.71 22.54 0.15 -1.36 16 21 O -0.32 -7.72 10.33 -78.50 -0.81 -8.53 16 22 C 0.00 0.05 9.81 113.37 1.11 1.16 16 23 C 0.08 1.02 10.22 83.58 0.85 1.87 16 24 N -0.53 -8.23 5.26 -184.21 -0.97 -9.20 16 25 H 0.44 3.68 7.00 -92.71 -0.65 3.03 16 26 H 0.05 1.78 5.64 -2.39 -0.01 1.76 16 27 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.03 1.24 7.87 -2.39 -0.02 1.22 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.82 6.64 -2.39 -0.02 2.80 16 31 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 32 H 0.41 9.40 6.74 -92.71 -0.62 8.78 16 33 H 0.15 5.28 7.58 -2.91 -0.02 5.26 16 34 H 0.08 0.39 7.66 -2.39 -0.02 0.37 16 35 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.37 7.66 -2.39 -0.02 0.35 16 37 H 0.23 0.44 6.21 -2.91 -0.02 0.42 16 Total: -1.00 -77.36 311.78 3.07 -74.28 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.15 Total: 15.38 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 4.86 Total: 10.10 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -2.96 Total: -82.86 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -0.70 Total: -57.16 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.26 kcal Total: -77.36 3.07 -74.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521321705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.089 kcal (2) G-P(sol) polarization free energy of solvation -77.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds