Wall clock time and date at job start Tue Mar 31 2020 01:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 H 1.09000 * 109.46864 * 54.99402 * 3 2 1 5 5 C 1.50693 * 109.46946 * 175.00071 * 3 2 1 6 6 H 1.08000 * 120.00328 * 120.00423 * 5 3 2 7 7 C 1.37876 * 120.00092 * 299.99437 * 5 3 2 8 8 N 1.31522 * 119.99954 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00455 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47111 * 90.00109 * 9 7 5 11 11 H 1.48498 * 109.47254 * 210.00269 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00589 * 9 7 5 13 13 N 1.46501 * 109.46701 * 294.99762 * 3 2 1 14 14 C 1.34780 * 119.99881 * 85.00711 * 13 3 2 15 15 O 1.21507 * 120.00123 * 359.97438 * 14 13 3 16 16 C 1.48081 * 119.99682 * 179.97438 * 14 13 3 17 17 C 1.36171 * 119.71475 * 180.02562 * 16 14 13 18 18 C 1.41635 * 119.18584 * 180.02562 * 17 16 14 19 19 O 1.22262 * 120.65214 * 179.97438 * 18 17 16 20 20 C 1.41576 * 118.69004 * 359.97438 * 18 17 16 21 21 O 1.36004 * 120.31269 * 180.02562 * 20 18 17 22 22 C 1.42907 * 116.99832 * 179.97438 * 21 20 18 23 23 C 1.35853 * 119.37046 * 0.02562 * 20 18 17 24 24 N 1.35445 * 120.77693 * 0.02562 * 23 20 18 25 25 H 0.97001 * 119.29390 * 180.02562 * 24 23 20 26 26 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47719 * 300.00233 * 1 2 3 28 28 H 1.09000 * 109.46954 * 60.00699 * 1 2 3 29 29 H 1.09000 * 109.47196 * 239.99902 * 2 1 3 30 30 H 1.09000 * 109.46751 * 119.99815 * 2 1 3 31 31 H 0.96996 * 119.99965 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99843 * 264.99734 * 13 3 2 33 33 H 1.07993 * 120.41150 * 359.97438 * 17 16 14 34 34 H 1.08997 * 109.46900 * 299.99745 * 22 21 20 35 35 H 1.08995 * 109.47562 * 59.99950 * 22 21 20 36 36 H 1.09007 * 109.47084 * 180.02562 * 22 21 20 37 37 H 1.08000 * 119.61137 * 180.30075 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3368 2.1730 9 14 6.0048 0.8814 1.3819 10 1 6.4415 2.1144 2.0850 11 1 6.4394 -0.3096 2.1551 12 1 6.6135 0.8418 0.0279 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3411 2.6319 -0.4327 16 6 0.0436 3.3268 -2.6322 17 6 -1.1876 3.8982 -2.7421 18 6 -1.5506 4.5283 -3.9575 19 8 -2.6492 5.0493 -4.0856 20 6 -0.6163 4.5428 -5.0211 21 8 -0.9302 5.1391 -6.2024 22 6 0.0656 5.1127 -7.2272 23 6 0.5968 3.9554 -4.8504 24 7 0.9189 3.3584 -3.6780 25 1 1.7913 2.9459 -3.5795 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0616 2.9496 32 1 2.2720 2.1231 -1.9978 33 1 -1.8790 3.8706 -1.9130 34 1 0.9642 5.6182 -6.8736 35 1 0.3042 4.0786 -7.4754 36 1 -0.3121 5.6218 -8.1140 37 1 1.3143 3.9684 -5.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521321706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:18 Heat of formation + Delta-G solvation = -72.238938 kcal Electronic energy + Delta-G solvation = -21823.499728 eV Core-core repulsion = 18374.178387 eV Total energy + Delta-G solvation = -3449.321341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35926 -39.47930 -38.06015 -37.54438 -35.44277 -32.74697 -31.59253 -31.29829 -30.39831 -27.86506 -27.19774 -24.48872 -23.27840 -22.95515 -20.92824 -19.83833 -19.60951 -18.13931 -17.69981 -16.35576 -16.19469 -16.17372 -15.60427 -15.12888 -15.07490 -14.56493 -14.48110 -14.19497 -13.98329 -13.37773 -13.12920 -12.86131 -12.73967 -12.27763 -11.75418 -11.72393 -11.55094 -11.41961 -11.15605 -10.99748 -10.51208 -10.39798 -9.88248 -9.73000 -9.38924 -9.38566 -9.27285 -8.69233 -8.20308 -7.71435 -6.29235 -4.40680 0.80962 1.12718 2.56581 3.10529 3.13300 3.16940 3.20260 3.21707 3.44259 3.80409 4.19107 4.28712 4.55950 4.82540 4.88103 4.90560 5.02127 5.03249 5.22633 5.50244 5.78985 6.15946 6.23688 6.28272 6.47256 6.52698 6.65108 6.84703 6.99767 7.01602 7.08184 7.17406 7.38974 7.48540 7.67394 7.96898 8.04301 8.24227 8.46346 8.69476 9.26910 10.75931 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025314 B = 0.004132 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.844827 B = 6774.926156 C = 7539.425863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.056 0.944 5 C -0.542 4.542 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.540 3.460 15 O -0.507 6.507 16 C 0.134 3.866 17 C -0.223 4.223 18 C 0.401 3.599 19 O -0.505 6.505 20 C -0.039 4.039 21 O -0.290 6.290 22 C 0.018 3.982 23 C 0.030 3.970 24 N -0.562 5.562 25 H 0.421 0.579 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.103 0.897 31 H 0.267 0.733 32 H 0.383 0.617 33 H 0.168 0.832 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 3.775 -14.764 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.580 4.580 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.346 5.346 14 C 0.322 3.678 15 O -0.383 6.383 16 C 0.021 3.979 17 C -0.250 4.250 18 C 0.292 3.708 19 O -0.389 6.389 20 C -0.090 4.090 21 O -0.201 6.201 22 C -0.077 4.077 23 C -0.098 4.098 24 N -0.176 5.176 25 H 0.259 0.741 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.216 0.784 33 H 0.186 0.814 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.837 4.020 -14.001 14.590 hybrid contribution 2.200 -0.346 -0.450 2.272 sum 1.363 3.673 -14.450 14.972 Atomic orbital electron populations 1.21871 0.98160 0.98559 1.01237 1.21965 0.92728 0.99382 1.02660 1.18970 0.94670 0.89381 0.80070 0.92640 1.21141 0.90257 1.39908 1.06691 0.92031 1.24876 0.98804 0.94529 0.95261 1.69878 1.35359 1.36966 1.09272 0.86422 0.84457 0.77825 0.78245 1.20459 1.20949 1.19869 1.46585 1.13667 1.55289 1.19031 1.17890 0.83762 0.80212 0.85910 1.90837 1.51051 1.58510 1.37858 1.20893 0.91410 0.97471 0.88143 1.22430 0.96546 1.04930 1.01104 1.16820 0.87186 0.81096 0.85732 1.90833 1.22380 1.42280 1.83449 1.20433 0.95440 1.03009 0.90164 1.86270 1.40910 1.73152 1.19797 1.23110 0.92284 1.01750 0.90573 1.21633 0.98087 0.99974 0.90064 1.40802 1.17458 1.49243 1.10070 0.74116 0.95426 0.92870 0.94466 0.94834 0.87899 0.92293 0.78433 0.81428 0.92811 0.92812 0.88068 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.13 -2.83 5.45 -26.73 -0.15 -2.97 16 3 C 0.27 6.05 2.24 -69.08 -0.15 5.89 16 4 H 0.06 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -12.87 8.73 -34.44 -0.30 -13.17 16 6 H 0.06 1.37 7.74 -52.49 -0.41 0.96 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -22.94 11.29 55.43 0.63 -22.31 16 9 Si 0.90 19.11 29.54 -169.99 -5.02 14.08 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 N -0.70 -12.11 5.01 -55.81 -0.28 -12.39 16 14 C 0.54 9.41 6.37 -12.22 -0.08 9.34 16 15 O -0.51 -10.69 13.41 5.36 0.07 -10.62 16 16 C 0.13 1.89 6.77 -82.53 -0.56 1.33 16 17 C -0.22 -3.53 9.53 -39.03 -0.37 -3.90 16 18 C 0.40 6.74 6.78 -37.01 -0.25 6.49 16 19 O -0.50 -10.34 17.71 -11.15 -0.20 -10.53 16 20 C -0.04 -0.52 6.71 -39.16 -0.26 -0.78 16 21 O -0.29 -3.75 10.33 -35.58 -0.37 -4.11 16 22 C 0.02 0.13 9.81 101.05 0.99 1.12 16 23 C 0.03 0.28 10.22 -16.81 -0.17 0.11 16 24 N -0.56 -5.64 5.26 -9.58 -0.05 -5.70 16 25 H 0.42 3.07 7.00 -40.82 -0.29 2.78 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 28 H 0.04 0.73 5.64 -51.93 -0.29 0.44 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 32 H 0.38 5.25 6.75 -40.82 -0.28 4.97 16 33 H 0.17 2.78 7.57 -52.49 -0.40 2.39 16 34 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 35 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.17 0.85 6.21 -52.49 -0.33 0.53 16 LS Contribution 310.62 15.07 4.68 4.68 Total: -1.00 -32.20 310.62 -5.91 -38.11 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.29 Total: 6.29 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.08 Total: 2.50 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.30 Total: -40.40 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.49 Total: -25.27 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.20 -5.91 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521321706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.130 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds