Wall clock time and date at job start Tue Mar 31 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46473 * 2 1 4 4 C 1.52995 * 109.46994 * 240.00065 * 2 1 3 5 5 C 1.50703 * 109.47238 * 65.00286 * 4 2 1 6 6 O 1.21277 * 120.00005 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.46494 * 119.99677 * 179.97438 * 7 5 4 9 9 C 1.53498 * 114.20393 * 155.00067 * 8 7 5 10 10 N 1.47065 * 87.98675 * 87.71349 * 9 8 7 11 11 C 1.36935 * 136.05778 * 207.07950 * 10 9 8 12 12 H 1.07997 * 119.99961 * 6.77313 * 11 10 9 13 13 C 1.38812 * 119.99962 * 186.76980 * 11 10 9 14 14 N 1.31618 * 119.99992 * 172.26235 * 13 11 10 15 15 Si 1.86794 * 120.00181 * 352.26315 * 13 11 10 16 16 H 1.48495 * 109.47373 * 175.35665 * 15 13 11 17 17 H 1.48501 * 109.47224 * 295.36298 * 15 13 11 18 18 H 1.48505 * 109.47188 * 55.35894 * 15 13 11 19 19 C 1.47070 * 87.88470 * 27.34556 * 10 9 8 20 20 C 1.52999 * 109.47066 * 119.99635 * 2 1 3 21 21 F 1.39898 * 109.46668 * 180.02562 * 20 2 1 22 22 F 1.39898 * 109.47065 * 300.00314 * 20 2 1 23 23 F 1.39898 * 109.46614 * 60.00466 * 20 2 1 24 24 H 1.08998 * 109.46686 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46757 * 299.99979 * 1 2 3 26 26 H 1.09001 * 109.46850 * 60.00317 * 1 2 3 27 27 H 1.08997 * 109.47373 * 304.99690 * 4 2 1 28 28 H 1.08999 * 109.46550 * 184.99782 * 4 2 1 29 29 H 0.97001 * 119.99850 * 359.97438 * 7 5 4 30 30 H 1.08994 * 113.28499 * 21.93089 * 8 7 5 31 31 H 1.09003 * 113.46903 * 332.93254 * 9 8 7 32 32 H 1.09002 * 113.51847 * 202.50737 * 9 8 7 33 33 H 0.97005 * 119.99783 * 4.88000 * 14 13 11 34 34 H 1.08996 * 113.47141 * 87.43428 * 19 10 9 35 35 H 1.09002 * 113.46180 * 217.88172 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0111 1.0870 -2.3633 7 7 1.9846 -0.3919 -3.7002 8 6 1.5966 0.3645 -4.8933 9 6 2.5025 0.1291 -6.1099 10 7 1.6446 -1.0122 -6.4627 11 6 1.8020 -2.1916 -7.1404 12 1 2.7837 -2.4984 -7.4694 13 6 0.6996 -2.9928 -7.4043 14 7 0.8231 -4.0461 -8.1839 15 14 -0.9592 -2.5763 -6.6532 16 1 -1.9878 -3.5117 -7.1748 17 1 -0.8792 -2.7021 -5.1757 18 1 -1.3294 -1.1836 -7.0120 19 6 0.5415 -0.3261 -5.7731 20 6 2.0401 -0.7212 1.2493 21 9 3.4391 -0.7206 1.2495 22 9 1.5737 -0.0616 2.3915 23 9 1.5738 -2.0402 1.2492 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 2.4884 -1.2158 -3.7908 30 1 1.3870 1.4143 -4.6886 31 1 3.5198 -0.1584 -5.8444 32 1 2.4701 0.9384 -6.8394 33 1 1.6973 -4.3033 -8.5167 34 1 -0.0086 0.3636 -6.4133 35 1 -0.1118 -1.0015 -5.2207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567805247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:21 Heat of formation + Delta-G solvation = -137.219846 kcal Electronic energy + Delta-G solvation = -22464.087854 eV Core-core repulsion = 18470.091989 eV Total energy + Delta-G solvation = -3993.995865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.31408 -47.79954 -47.76861 -40.08679 -38.31776 -35.16668 -33.59002 -32.21850 -28.79798 -27.44198 -26.44218 -25.45532 -22.96095 -21.72224 -20.38897 -19.59477 -18.78972 -18.53868 -17.80774 -17.52010 -16.51922 -16.11017 -15.73117 -14.88211 -14.83682 -14.64611 -14.26972 -14.21149 -13.95781 -13.91532 -13.87106 -13.67926 -13.43175 -13.20444 -12.98096 -12.49648 -12.09304 -11.62621 -11.57389 -11.48782 -11.36121 -11.10189 -10.61665 -10.38054 -9.81154 -9.56979 -9.27198 -8.93511 -8.62213 -7.24071 -6.39241 -3.31061 2.48521 2.62828 3.17004 3.36945 3.39522 3.60503 3.62737 3.85074 3.85454 4.44027 4.52989 4.61495 4.65024 4.81748 5.00682 5.07189 5.27307 5.31908 5.35362 5.57333 5.70481 5.77600 5.85354 6.05793 6.14176 6.18258 6.23869 6.35158 6.87435 7.01186 7.67366 8.16227 8.28613 8.89902 9.42546 10.27711 11.13327 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.004247 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.911417 B = 6591.319708 C = 6825.208459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 H 0.122 0.878 4 C -0.146 4.146 5 C 0.521 3.479 6 O -0.545 6.545 7 N -0.692 5.692 8 C 0.098 3.902 9 C 0.114 3.886 10 N -0.628 5.628 11 C -0.309 4.309 12 H 0.083 0.917 13 C -0.022 4.022 14 N -0.932 5.932 15 Si 1.072 2.928 16 H -0.295 1.295 17 H -0.295 1.295 18 H -0.287 1.287 19 C 0.085 3.915 20 C 0.453 3.547 21 F -0.185 7.185 22 F -0.183 7.183 23 F -0.181 7.181 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.408 0.592 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.261 0.739 34 H 0.055 0.945 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 8.649 18.189 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.135 4.135 3 H 0.141 0.859 4 C -0.186 4.186 5 C 0.307 3.693 6 O -0.423 6.423 7 N -0.341 5.341 8 C -0.009 4.009 9 C -0.014 4.014 10 N -0.357 5.357 11 C -0.435 4.435 12 H 0.101 0.899 13 C -0.221 4.221 14 N -0.574 5.574 15 Si 0.905 3.095 16 H -0.223 1.223 17 H -0.223 1.223 18 H -0.214 1.214 19 C -0.042 4.042 20 C 0.399 3.601 21 F -0.166 7.166 22 F -0.164 7.164 23 F -0.163 7.163 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.244 0.756 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.767 8.655 18.175 20.146 hybrid contribution 2.044 -0.169 -0.034 2.051 sum 2.811 8.486 18.141 20.224 Atomic orbital electron populations 1.22024 0.90861 1.03591 1.05237 1.22152 1.00422 1.01560 0.89391 0.85948 1.21718 1.04012 1.01064 0.91836 1.20133 0.79323 0.85465 0.84347 1.90655 1.40317 1.24749 1.86624 1.45489 1.56391 1.27552 1.04717 1.22495 0.98313 0.95459 0.84619 1.22707 0.95378 0.91001 0.92266 1.46124 1.07006 1.16193 1.66377 1.20108 0.96414 0.93861 1.33152 0.89948 1.25718 1.02290 0.96267 0.97852 1.70927 1.25646 1.28586 1.32251 0.83666 0.75967 0.75000 0.74903 1.22267 1.22307 1.21405 1.23270 0.93193 0.94853 0.92872 1.20673 0.75346 0.77804 0.86310 1.93179 1.30199 1.96437 1.96815 1.93172 1.88478 1.80765 1.54006 1.93181 1.88410 1.37893 1.96815 0.91692 0.91477 0.88154 0.87313 0.87578 0.75627 0.87761 0.93250 0.93047 0.92861 0.92715 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.69 37.16 0.32 -1.29 16 2 C -0.12 -1.12 2.01 -90.62 -0.18 -1.31 16 3 H 0.12 1.16 7.96 -51.93 -0.41 0.74 16 4 C -0.15 -1.47 4.93 -27.88 -0.14 -1.61 16 5 C 0.52 7.02 7.55 -10.98 -0.08 6.93 16 6 O -0.54 -8.57 13.56 5.56 0.08 -8.50 16 7 N -0.69 -10.18 5.40 -53.48 -0.29 -10.47 16 8 C 0.10 1.62 4.61 -67.67 -0.31 1.30 16 9 C 0.11 2.04 8.44 -8.51 -0.07 1.97 16 10 N -0.63 -14.48 3.70 -184.60 -0.68 -15.16 16 11 C -0.31 -8.53 11.08 -15.06 -0.17 -8.70 16 12 H 0.08 2.39 8.05 -52.49 -0.42 1.97 16 13 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 14 N -0.93 -28.85 13.70 55.49 0.76 -28.08 16 15 Si 1.07 26.45 25.13 -169.99 -4.27 22.17 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.29 -6.89 6.65 56.52 0.38 -6.52 16 18 H -0.29 -6.65 6.13 56.52 0.35 -6.31 16 19 C 0.08 1.72 5.54 -8.36 -0.05 1.68 16 20 C 0.45 4.51 2.69 37.16 0.10 4.61 16 21 F -0.18 -1.90 16.71 2.25 0.04 -1.86 16 22 F -0.18 -1.91 16.80 2.25 0.04 -1.87 16 23 F -0.18 -1.95 16.37 2.25 0.04 -1.91 16 24 H 0.06 0.63 7.80 -51.93 -0.41 0.23 16 25 H 0.07 0.60 7.80 -51.93 -0.41 0.20 16 26 H 0.10 1.20 5.95 -51.93 -0.31 0.89 16 27 H 0.11 1.03 7.94 -51.93 -0.41 0.62 16 28 H 0.11 0.88 7.66 -51.93 -0.40 0.48 16 29 H 0.41 5.77 8.76 -40.82 -0.36 5.41 16 30 H 0.10 1.61 7.45 -51.93 -0.39 1.23 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 34 H 0.06 1.09 7.73 -51.93 -0.40 0.69 16 35 H 0.05 1.16 4.65 -51.93 -0.24 0.92 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -31.66 299.07 -4.69 -36.35 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.23 Total: 1.97 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.67 Total: 2.85 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.21 Total: -53.71 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.11 Total: -5.64 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.27 Total: 22.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.66 -4.69 -36.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567805247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.873 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds