Wall clock time and date at job start Tue Mar 31 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46473 * 2 1 4 4 C 1.52995 * 109.46994 * 240.00065 * 2 1 3 5 5 C 1.50703 * 109.47238 * 65.00286 * 4 2 1 6 6 O 1.21277 * 120.00005 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.46494 * 119.99677 * 179.97438 * 7 5 4 9 9 C 1.53498 * 114.20393 * 155.00067 * 8 7 5 10 10 N 1.47065 * 87.98675 * 87.71349 * 9 8 7 11 11 C 1.36935 * 136.05778 * 207.07950 * 10 9 8 12 12 H 1.07997 * 119.99961 * 6.77313 * 11 10 9 13 13 C 1.38812 * 119.99962 * 186.76980 * 11 10 9 14 14 N 1.31618 * 119.99992 * 172.26235 * 13 11 10 15 15 Si 1.86794 * 120.00181 * 352.26315 * 13 11 10 16 16 H 1.48495 * 109.47373 * 175.35665 * 15 13 11 17 17 H 1.48501 * 109.47224 * 295.36298 * 15 13 11 18 18 H 1.48505 * 109.47188 * 55.35894 * 15 13 11 19 19 C 1.47070 * 87.88470 * 27.34556 * 10 9 8 20 20 C 1.52999 * 109.47066 * 119.99635 * 2 1 3 21 21 F 1.39898 * 109.46668 * 180.02562 * 20 2 1 22 22 F 1.39898 * 109.47065 * 300.00314 * 20 2 1 23 23 F 1.39898 * 109.46614 * 60.00466 * 20 2 1 24 24 H 1.08998 * 109.46686 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46757 * 299.99979 * 1 2 3 26 26 H 1.09001 * 109.46850 * 60.00317 * 1 2 3 27 27 H 1.08997 * 109.47373 * 304.99690 * 4 2 1 28 28 H 1.08999 * 109.46550 * 184.99782 * 4 2 1 29 29 H 0.97001 * 119.99850 * 359.97438 * 7 5 4 30 30 H 1.08994 * 113.28499 * 21.93089 * 8 7 5 31 31 H 1.09003 * 113.46903 * 332.93254 * 9 8 7 32 32 H 1.09002 * 113.51847 * 202.50737 * 9 8 7 33 33 H 0.97005 * 119.99783 * 4.88000 * 14 13 11 34 34 H 1.08996 * 113.47141 * 87.43428 * 19 10 9 35 35 H 1.09002 * 113.46180 * 217.88172 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0111 1.0870 -2.3633 7 7 1.9846 -0.3919 -3.7002 8 6 1.5966 0.3645 -4.8933 9 6 2.5025 0.1291 -6.1099 10 7 1.6446 -1.0122 -6.4627 11 6 1.8020 -2.1916 -7.1404 12 1 2.7837 -2.4984 -7.4694 13 6 0.6996 -2.9928 -7.4043 14 7 0.8231 -4.0461 -8.1839 15 14 -0.9592 -2.5763 -6.6532 16 1 -1.9878 -3.5117 -7.1748 17 1 -0.8792 -2.7021 -5.1757 18 1 -1.3294 -1.1836 -7.0120 19 6 0.5415 -0.3261 -5.7731 20 6 2.0401 -0.7212 1.2493 21 9 3.4391 -0.7206 1.2495 22 9 1.5737 -0.0616 2.3915 23 9 1.5738 -2.0402 1.2492 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 2.4884 -1.2158 -3.7908 30 1 1.3870 1.4143 -4.6886 31 1 3.5198 -0.1584 -5.8444 32 1 2.4701 0.9384 -6.8394 33 1 1.6973 -4.3033 -8.5167 34 1 -0.0086 0.3636 -6.4133 35 1 -0.1118 -1.0015 -5.2207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567805247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:21 Heat of formation + Delta-G solvation = -159.595378 kcal Electronic energy + Delta-G solvation = -22465.058130 eV Core-core repulsion = 18470.091989 eV Total energy + Delta-G solvation = -3994.966141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.11047 -48.59392 -48.57301 -41.30116 -39.71054 -36.05664 -35.08670 -34.07373 -30.19514 -28.77334 -27.25898 -27.00779 -24.56569 -22.82192 -21.43182 -21.14004 -19.61889 -19.52227 -19.34320 -18.63132 -17.63084 -17.41669 -16.84164 -16.29296 -15.95858 -15.70113 -15.49213 -15.39240 -15.10421 -15.01265 -14.80715 -14.73377 -14.66450 -14.42779 -13.99389 -13.62480 -13.38338 -13.17881 -12.76487 -12.46687 -12.37351 -12.34664 -12.25512 -12.01943 -11.34681 -11.24066 -11.02062 -10.87285 -9.94852 -9.20158 -8.63421 -5.45677 1.38863 1.46032 1.55227 1.66251 1.67914 2.15833 2.52612 2.81914 2.95545 3.01765 3.07322 3.25453 3.58117 3.62996 3.84726 3.92283 4.23697 4.32475 4.38406 4.52619 4.55090 4.66233 4.69385 4.77216 4.81987 4.93783 4.95881 5.19927 5.28296 5.59981 5.96381 6.55127 6.71039 7.19307 7.33811 8.27596 8.92323 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.004247 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.911417 B = 6591.319708 C = 6825.208459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 H 0.127 0.873 4 C -0.141 4.141 5 C 0.524 3.476 6 O -0.565 6.565 7 N -0.697 5.697 8 C 0.124 3.876 9 C 0.115 3.885 10 N -0.656 5.656 11 C -0.286 4.286 12 H 0.055 0.945 13 C -0.082 4.082 14 N -0.973 5.973 15 Si 1.108 2.892 16 H -0.309 1.309 17 H -0.276 1.276 18 H -0.264 1.264 19 C 0.073 3.927 20 C 0.458 3.542 21 F -0.186 7.186 22 F -0.185 7.185 23 F -0.186 7.186 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.411 0.589 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.247 0.753 34 H 0.064 0.936 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 10.298 20.047 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.131 4.131 3 H 0.145 0.855 4 C -0.181 4.181 5 C 0.312 3.688 6 O -0.445 6.445 7 N -0.347 5.347 8 C 0.017 3.983 9 C -0.010 4.010 10 N -0.385 5.385 11 C -0.414 4.414 12 H 0.073 0.927 13 C -0.274 4.274 14 N -0.619 5.619 15 Si 0.936 3.064 16 H -0.238 1.238 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.053 4.053 20 C 0.404 3.596 21 F -0.167 7.167 22 F -0.167 7.167 23 F -0.167 7.167 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.136 0.864 28 H 0.146 0.854 29 H 0.247 0.753 30 H 0.142 0.858 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.838 10.360 20.077 22.608 hybrid contribution 2.137 -0.600 -0.570 2.291 sum 2.975 9.760 19.507 22.014 Atomic orbital electron populations 1.21979 0.91140 1.03613 1.04802 1.22116 1.00144 1.01767 0.89078 0.85451 1.21737 1.05470 1.00783 0.90116 1.20604 0.78369 0.85198 0.84626 1.90657 1.41087 1.25816 1.86908 1.45551 1.56704 1.27719 1.04684 1.22192 0.95601 0.96114 0.84442 1.22912 0.95612 0.89409 0.93102 1.46172 1.09816 1.16423 1.66107 1.19981 0.94966 0.95407 1.31006 0.92707 1.26863 1.05681 0.96271 0.98576 1.71022 1.24893 1.30709 1.35281 0.83222 0.72322 0.75586 0.75256 1.23792 1.20315 1.18982 1.23513 0.93473 0.94771 0.93495 1.20621 0.75224 0.77531 0.86213 1.93180 1.30279 1.96423 1.96812 1.93170 1.88510 1.80796 1.54182 1.93178 1.88462 1.38247 1.96827 0.91464 0.90561 0.89896 0.86431 0.85416 0.75304 0.85796 0.92186 0.91204 0.94332 0.91832 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.69 71.99 0.63 -2.22 16 2 C -0.11 -1.87 2.01 -10.79 -0.02 -1.90 16 3 H 0.13 2.06 7.96 -2.39 -0.02 2.04 16 4 C -0.14 -2.42 4.93 29.85 0.15 -2.27 16 5 C 0.52 12.57 7.55 87.66 0.66 13.23 16 6 O -0.57 -16.21 13.56 -3.02 -0.04 -16.25 16 7 N -0.70 -18.44 5.40 -441.52 -2.39 -20.83 16 8 C 0.12 3.69 4.61 45.55 0.21 3.90 16 9 C 0.12 3.82 8.44 83.18 0.70 4.52 16 10 N -0.66 -29.15 3.70 -737.96 -2.73 -31.88 16 11 C -0.29 -15.82 11.08 84.03 0.93 -14.88 16 12 H 0.06 3.26 8.05 -2.91 -0.02 3.24 16 13 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 14 N -0.97 -61.91 13.70 21.65 0.30 -61.62 16 15 Si 1.11 53.08 25.13 68.60 1.72 54.80 16 16 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 17 H -0.28 -12.20 6.65 99.48 0.66 -11.54 16 18 H -0.26 -11.51 6.13 99.48 0.61 -10.90 16 19 C 0.07 2.79 5.54 83.27 0.46 3.25 16 20 C 0.46 8.00 2.69 71.98 0.19 8.19 16 21 F -0.19 -3.34 16.71 44.97 0.75 -2.59 16 22 F -0.19 -3.46 16.80 44.97 0.76 -2.70 16 23 F -0.19 -3.55 16.37 44.97 0.74 -2.81 16 24 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 25 H 0.08 1.21 7.80 -2.39 -0.02 1.19 16 26 H 0.08 1.83 5.95 -2.39 -0.01 1.82 16 27 H 0.12 1.87 7.94 -2.39 -0.02 1.85 16 28 H 0.13 1.67 7.66 -2.39 -0.02 1.65 16 29 H 0.41 10.53 8.76 -92.71 -0.81 9.72 16 30 H 0.12 3.33 7.45 -2.39 -0.02 3.32 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.25 15.74 8.73 -92.70 -0.81 14.93 16 34 H 0.06 2.33 7.73 -2.39 -0.02 2.31 16 35 H 0.04 1.77 4.65 -2.39 -0.01 1.76 16 Total: -1.00 -68.19 299.07 3.63 -64.57 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.14 Total: 11.79 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.38 Total: 7.52 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.82 Total: -114.32 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.04 Total: -16.25 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 2.24 Total: -8.11 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 1.72 Total: 54.80 kcal Total: -68.19 3.63 -64.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567805247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.029 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds