Wall clock time and date at job start Tue Mar 31 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47609 * 2 1 4 4 C 1.52999 * 109.47012 * 119.99834 * 2 1 3 5 5 C 1.50700 * 109.47436 * 294.99986 * 4 2 1 6 6 O 1.21282 * 119.99885 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00312 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00034 * 180.02562 * 7 5 4 9 9 C 1.53495 * 114.20946 * 205.00198 * 8 7 5 10 10 N 1.47064 * 87.98647 * 220.14789 * 9 8 7 11 11 C 1.36929 * 136.05710 * 207.07951 * 10 9 8 12 12 H 1.08004 * 120.00104 * 6.50631 * 11 10 9 13 13 C 1.38818 * 120.00175 * 186.49548 * 11 10 9 14 14 N 1.31615 * 119.99847 * 6.43003 * 13 11 10 15 15 Si 1.86802 * 119.99925 * 186.42380 * 13 11 10 16 16 H 1.48502 * 109.46990 * 265.01960 * 15 13 11 17 17 H 1.48491 * 109.47236 * 25.02406 * 15 13 11 18 18 H 1.48506 * 109.46777 * 145.02360 * 15 13 11 19 19 C 1.47067 * 87.88549 * 27.33957 * 10 9 8 20 20 C 1.52998 * 109.47267 * 239.99897 * 2 1 3 21 21 F 1.39898 * 109.47242 * 299.99903 * 20 2 1 22 22 F 1.39895 * 109.47216 * 60.00080 * 20 2 1 23 23 F 1.39903 * 109.47255 * 180.02562 * 20 2 1 24 24 H 1.09007 * 109.46995 * 60.00138 * 1 2 3 25 25 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47249 * 300.00137 * 1 2 3 27 27 H 1.09007 * 109.47439 * 174.99868 * 4 2 1 28 28 H 1.09003 * 109.47044 * 55.00016 * 4 2 1 29 29 H 0.96996 * 119.99967 * 359.97438 * 7 5 4 30 30 H 1.09008 * 113.28018 * 338.07062 * 8 7 5 31 31 H 1.08996 * 113.46596 * 105.36686 * 9 8 7 32 32 H 1.09007 * 113.51449 * 334.93936 * 9 8 7 33 33 H 0.97003 * 120.00226 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.46771 * 87.43754 * 19 10 9 35 35 H 1.09002 * 113.46911 * 217.87594 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9844 -0.3919 3.7002 8 6 1.5963 0.3645 4.8934 9 6 2.5022 0.1292 6.1100 10 7 1.2924 0.1330 6.9462 11 6 0.9951 0.4333 8.2487 12 1 1.7515 0.8604 8.8906 13 6 -0.2784 0.1889 8.7441 14 7 -1.1619 -0.4460 8.0035 15 14 -0.7381 0.7612 10.4618 16 1 -0.5347 -0.3507 11.4250 17 1 0.1183 1.9118 10.8460 18 1 -2.1636 1.1772 10.4800 19 6 0.5437 -0.3340 5.7697 20 6 2.0400 -0.7213 -1.2492 21 9 1.5737 -2.0402 -1.2492 22 9 1.5737 -0.0618 -2.3915 23 9 3.4390 -0.7218 -1.2489 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7995 1.2057 28 1 1.6053 -1.7198 1.2952 29 1 2.4876 -1.2161 3.7909 30 1 1.3866 1.4144 4.6886 31 1 3.1755 0.9609 6.3170 32 1 3.0141 -0.8330 6.0914 33 1 -2.0518 -0.6171 8.3497 34 1 0.5388 -1.4186 5.6608 35 1 -0.4515 0.1029 5.6870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567805248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:23 Heat of formation + Delta-G solvation = -164.970804 kcal Electronic energy + Delta-G solvation = -22029.081897 eV Core-core repulsion = 18033.882660 eV Total energy + Delta-G solvation = -3995.199237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.08460 -48.57225 -48.53864 -41.14286 -39.52384 -36.03585 -35.13011 -33.82817 -30.01795 -28.67424 -27.24329 -26.41951 -25.07435 -22.72538 -21.46823 -21.20175 -19.56819 -19.30845 -18.77774 -18.56205 -17.35855 -17.30908 -16.94617 -16.48826 -15.78987 -15.65840 -15.48358 -15.11675 -14.98700 -14.74057 -14.69392 -14.68311 -14.40453 -14.20432 -13.72589 -13.35557 -13.23554 -13.13115 -12.89909 -12.64986 -12.41915 -12.33764 -12.24086 -12.17570 -12.00336 -11.38948 -10.89079 -10.81271 -9.88922 -8.99589 -7.96529 -5.29838 1.45640 1.48001 1.57469 1.63155 1.70481 2.17445 2.48965 2.84843 3.04643 3.09789 3.27609 3.46198 3.64460 3.78052 3.89635 3.97667 4.25252 4.35995 4.53348 4.56936 4.59570 4.76240 4.81516 4.90736 4.96162 5.15948 5.17742 5.33617 5.44047 5.71539 5.86279 6.62540 6.85424 7.31248 7.55220 8.53934 9.22418 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.046543 B = 0.003121 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.453173 B = 8970.590992 C = 9187.335836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 H 0.121 0.879 4 C -0.135 4.135 5 C 0.518 3.482 6 O -0.576 6.576 7 N -0.700 5.700 8 C 0.119 3.881 9 C 0.117 3.883 10 N -0.638 5.638 11 C -0.233 4.233 12 H 0.091 0.909 13 C -0.067 4.067 14 N -0.954 5.954 15 Si 0.983 3.017 16 H -0.284 1.284 17 H -0.264 1.264 18 H -0.295 1.295 19 C 0.150 3.850 20 C 0.461 3.539 21 F -0.183 7.183 22 F -0.187 7.187 23 F -0.184 7.184 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.417 0.583 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.249 0.751 34 H 0.028 0.972 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.225 -2.846 -18.775 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.134 4.134 3 H 0.139 0.861 4 C -0.175 4.175 5 C 0.305 3.695 6 O -0.456 6.456 7 N -0.351 5.351 8 C 0.012 3.988 9 C -0.009 4.009 10 N -0.365 5.365 11 C -0.361 4.361 12 H 0.109 0.891 13 C -0.260 4.260 14 N -0.602 5.602 15 Si 0.810 3.190 16 H -0.211 1.211 17 H -0.189 1.189 18 H -0.222 1.222 19 C 0.022 3.978 20 C 0.407 3.593 21 F -0.165 7.165 22 F -0.169 7.169 23 F -0.165 7.165 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.145 0.855 29 H 0.254 0.746 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.623 -2.102 -18.580 20.591 hybrid contribution -0.410 -0.414 0.876 1.052 sum 8.212 -2.516 -17.705 19.678 Atomic orbital electron populations 1.21962 0.91471 1.03722 1.04404 1.22115 0.99913 1.01768 0.89649 0.86071 1.21737 1.05643 1.00790 0.89320 1.20823 0.78303 0.85207 0.85123 1.90691 1.41346 1.26564 1.87033 1.45746 1.56972 1.27728 1.04688 1.22895 0.96702 0.96401 0.82770 1.22834 0.90598 1.00076 0.87357 1.45683 1.06364 1.77327 1.07127 1.19358 0.96723 1.34106 0.85864 0.89099 1.25740 0.96840 1.00880 1.02557 1.70039 1.05411 1.46098 1.38663 0.85003 0.76984 0.78166 0.78817 1.21069 1.18889 1.22202 1.22425 0.95210 0.95713 0.84427 1.20545 0.75243 0.77540 0.86011 1.93175 1.88459 1.38006 1.96813 1.93169 1.88547 1.80886 1.54254 1.93182 1.30134 1.96426 1.96798 0.90909 0.90961 0.90555 0.84889 0.85509 0.74551 0.88201 0.92192 0.92056 0.94189 0.95439 0.96155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.69 71.98 0.63 -2.43 16 2 C -0.11 -1.96 2.01 -10.80 -0.02 -1.98 16 3 H 0.12 2.15 7.96 -2.39 -0.02 2.13 16 4 C -0.14 -2.09 4.93 29.85 0.15 -1.94 16 5 C 0.52 12.90 7.55 87.66 0.66 13.56 16 6 O -0.58 -19.27 13.56 -3.04 -0.04 -19.31 16 7 N -0.70 -17.75 5.39 -441.52 -2.38 -20.13 16 8 C 0.12 4.27 4.62 45.55 0.21 4.48 16 9 C 0.12 4.32 8.44 83.18 0.70 5.03 16 10 N -0.64 -32.28 3.76 -738.02 -2.78 -35.06 16 11 C -0.23 -12.95 10.73 84.04 0.90 -12.05 16 12 H 0.09 4.76 7.84 -2.91 -0.02 4.74 16 13 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 14 N -0.95 -58.19 11.81 21.65 0.26 -57.93 16 15 Si 0.98 45.47 29.56 68.60 2.03 47.50 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 19 C 0.15 7.03 7.05 83.27 0.59 7.62 16 20 C 0.46 7.69 2.69 71.98 0.19 7.88 16 21 F -0.18 -3.16 16.37 44.97 0.74 -2.42 16 22 F -0.19 -3.51 16.80 44.97 0.76 -2.75 16 23 F -0.18 -3.08 16.71 44.97 0.75 -2.33 16 24 H 0.07 1.28 7.80 -2.38 -0.02 1.26 16 25 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 26 H 0.08 1.92 5.95 -2.39 -0.01 1.91 16 27 H 0.13 1.38 7.66 -2.38 -0.02 1.36 16 28 H 0.13 1.54 7.94 -2.39 -0.02 1.52 16 29 H 0.42 7.64 8.76 -92.71 -0.81 6.83 16 30 H 0.10 3.99 7.45 -2.38 -0.02 3.98 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 Total: -1.00 -70.43 306.96 4.11 -66.31 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.31 Total: 9.31 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 4.47 Total: 16.82 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.90 Total: -113.13 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.04 Total: -19.31 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 2.24 Total: -7.50 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.43 4.11 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567805248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.658 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds