Wall clock time and date at job start Tue Mar 31 2020 02:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47070 * 2 1 4 4 C 1.50697 * 109.47407 * 120.00494 * 2 1 3 5 5 O 1.21276 * 120.00441 * 114.03753 * 4 2 1 6 6 N 1.34784 * 119.99884 * 294.03667 * 4 2 1 7 7 C 1.46497 * 119.99794 * 185.60528 * 6 4 2 8 8 C 1.46494 * 119.99762 * 5.60192 * 6 4 2 9 9 C 1.53496 * 114.20537 * 121.24480 * 8 6 4 10 10 N 1.47066 * 87.98583 * 87.71618 * 9 8 6 11 11 C 1.36938 * 136.05262 * 207.08295 * 10 9 8 12 12 H 1.08003 * 120.00383 * 354.88718 * 11 10 9 13 13 C 1.38816 * 119.99518 * 174.88349 * 11 10 9 14 14 N 1.31619 * 119.99583 * 184.07889 * 13 11 10 15 15 Si 1.86791 * 120.00236 * 4.07431 * 13 11 10 16 16 H 1.48499 * 109.47487 * 174.51958 * 15 13 11 17 17 H 1.48509 * 109.47391 * 294.51848 * 15 13 11 18 18 H 1.48499 * 109.47267 * 54.52016 * 15 13 11 19 19 C 1.47063 * 87.88386 * 27.34540 * 10 9 8 20 20 C 1.53000 * 109.46924 * 240.00732 * 2 1 3 21 21 F 1.39900 * 109.46809 * 299.99413 * 20 2 1 22 22 F 1.39898 * 109.47627 * 59.99565 * 20 2 1 23 23 F 1.39904 * 109.47091 * 179.97438 * 20 2 1 24 24 H 1.08995 * 109.46753 * 305.08352 * 1 2 3 25 25 H 1.08998 * 109.46962 * 65.08573 * 1 2 3 26 26 H 1.09000 * 109.46448 * 185.08863 * 1 2 3 27 27 H 1.08998 * 109.46980 * 274.79739 * 7 6 4 28 28 H 1.08999 * 109.47532 * 34.79992 * 7 6 4 29 29 H 1.09006 * 109.47098 * 154.80186 * 7 6 4 30 30 H 1.09002 * 113.28946 * 348.17200 * 8 6 4 31 31 H 1.08998 * 113.46731 * 332.93073 * 9 8 6 32 32 H 1.09003 * 113.46404 * 202.49527 * 9 8 6 33 33 H 0.96999 * 120.00749 * 5.00384 * 14 13 11 34 34 H 1.09001 * 113.47042 * 87.44318 * 19 10 9 35 35 H 1.09009 * 113.46440 * 217.87799 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6379 -1.7557 1.1223 6 7 1.8088 -0.1843 2.4509 7 6 2.4010 -0.8077 3.6370 8 6 0.9737 1.0111 2.5914 9 6 -0.2547 0.8184 3.4914 10 7 0.5919 1.1838 4.6370 11 6 0.6045 0.9138 5.9795 12 1 -0.2022 0.3502 6.4246 13 6 1.6541 1.3646 6.7682 14 7 1.7077 1.0374 8.0420 15 14 2.9904 2.4352 6.0219 16 1 3.9154 2.8897 7.0910 17 1 3.7472 1.6511 5.0130 18 1 2.3712 3.6161 5.3682 19 6 1.4151 1.9720 3.7076 20 6 2.0400 -0.7211 -1.2493 21 9 1.5737 -2.0401 -1.2494 22 9 1.5736 -0.0616 -2.3916 23 9 3.4390 -0.7206 -1.2497 24 1 -0.3633 0.5907 0.8409 25 1 -0.3633 0.4329 -0.9320 26 1 -0.3632 -1.0237 0.0912 27 1 1.7550 -1.6139 3.9846 28 1 3.3815 -1.2113 3.3842 29 1 2.5072 -0.0619 4.4248 30 1 0.7595 1.5012 1.6416 31 1 -0.6106 -0.2113 3.5255 32 1 -1.0528 1.5345 3.2956 33 1 1.0551 0.4230 8.4129 34 1 1.0572 2.9922 3.5689 35 1 2.4821 1.9251 3.9260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569497939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:46 Heat of formation + Delta-G solvation = -107.571642 kcal Electronic energy + Delta-G solvation = -23594.675169 eV Core-core repulsion = 19601.964947 eV Total energy + Delta-G solvation = -3992.710222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.13266 -47.65984 -47.52252 -40.48519 -38.44201 -34.52692 -33.84304 -32.36716 -28.43004 -26.77452 -26.64117 -25.58331 -23.50193 -22.51016 -20.56920 -19.20813 -18.72597 -18.31600 -17.69464 -17.20248 -16.91535 -15.84290 -15.53814 -14.91347 -14.63321 -14.45916 -14.32526 -14.04803 -13.96512 -13.73085 -13.68725 -13.48545 -13.27878 -13.12517 -12.84149 -12.38068 -12.12171 -11.92399 -11.67793 -11.47237 -11.40825 -11.05888 -10.70569 -10.53333 -9.89074 -9.40705 -9.29100 -9.05436 -8.38631 -7.31177 -6.42942 -3.37986 2.45438 2.49963 3.02964 3.24283 3.30373 3.52288 3.58678 3.90589 3.93149 4.42742 4.44708 4.48351 4.65583 4.74496 4.82056 5.12282 5.28051 5.32610 5.42999 5.56923 5.79337 5.91320 5.97457 6.02005 6.11210 6.18781 6.31384 6.54820 6.69209 6.91434 7.52880 8.08633 8.11257 8.83835 9.34667 10.17820 11.08041 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.032759 B = 0.005245 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.519507 B = 5337.458718 C = 5467.751483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.164 4.164 3 H 0.137 0.863 4 C 0.520 3.480 5 O -0.527 6.527 6 N -0.570 5.570 7 C 0.089 3.911 8 C 0.076 3.924 9 C 0.111 3.889 10 N -0.622 5.622 11 C -0.304 4.304 12 H 0.083 0.917 13 C -0.021 4.021 14 N -0.930 5.930 15 Si 1.066 2.934 16 H -0.293 1.293 17 H -0.289 1.289 18 H -0.289 1.289 19 C 0.078 3.922 20 C 0.474 3.526 21 F -0.171 7.171 22 F -0.183 7.183 23 F -0.175 7.175 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 0.926 -18.303 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.186 4.186 3 H 0.155 0.845 4 C 0.305 3.695 5 O -0.404 6.404 6 N -0.300 5.300 7 C -0.053 4.053 8 C -0.029 4.029 9 C -0.017 4.017 10 N -0.351 5.351 11 C -0.430 4.430 12 H 0.101 0.899 13 C -0.221 4.221 14 N -0.572 5.572 15 Si 0.899 3.101 16 H -0.221 1.221 17 H -0.218 1.218 18 H -0.216 1.216 19 C -0.048 4.048 20 C 0.419 3.581 21 F -0.152 7.152 22 F -0.165 7.165 23 F -0.157 7.157 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.369 1.136 -17.692 17.732 hybrid contribution -1.493 -0.717 -0.465 1.720 sum -1.861 0.419 -18.157 18.257 Atomic orbital electron populations 1.22100 0.89195 1.05184 1.05237 1.22645 1.01585 1.02954 0.91429 0.84476 1.19655 0.80466 0.85331 0.84029 1.90784 1.41525 1.22089 1.86028 1.47288 1.48723 1.27726 1.06270 1.21876 0.97047 0.99569 0.86763 1.22966 0.94222 0.87144 0.98598 1.22783 0.92944 0.99433 0.86559 1.46192 1.30466 1.54551 1.03857 1.20124 1.07974 1.34608 0.80302 0.89888 1.25644 0.99226 1.02087 0.95099 1.70899 1.38857 1.35826 1.11597 0.83818 0.76290 0.76166 0.73797 1.22072 1.21790 1.21614 1.23304 0.98142 0.94902 0.88463 1.19781 0.75852 0.77956 0.84494 1.93207 1.88250 1.37082 1.96646 1.93169 1.88587 1.80905 1.53831 1.93210 1.29413 1.96376 1.96675 0.88592 0.90027 0.90504 0.92597 0.92109 0.87783 0.87657 0.92917 0.93124 0.92692 0.92406 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.49 37.16 0.32 -1.11 16 2 C -0.16 -1.85 1.88 -91.77 -0.17 -2.02 16 3 H 0.14 1.18 7.58 -51.93 -0.39 0.79 16 4 C 0.52 8.10 6.78 -10.98 -0.07 8.02 16 5 O -0.53 -10.02 14.58 5.56 0.08 -9.94 16 6 N -0.57 -9.29 3.12 -173.56 -0.54 -9.84 16 7 C 0.09 1.67 9.53 59.85 0.57 2.24 16 8 C 0.08 1.11 3.39 -67.68 -0.23 0.88 16 9 C 0.11 1.83 7.95 -8.52 -0.07 1.76 16 10 N -0.62 -13.42 2.38 -184.63 -0.44 -13.86 16 11 C -0.30 -7.99 10.50 -15.06 -0.16 -8.15 16 12 H 0.08 2.35 8.05 -52.48 -0.42 1.93 16 13 C -0.02 -0.59 5.46 -17.43 -0.10 -0.68 16 14 N -0.93 -27.90 13.70 55.49 0.76 -27.14 16 15 Si 1.07 24.95 24.15 -169.99 -4.11 20.84 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -6.27 5.85 56.52 0.33 -5.94 16 18 H -0.29 -6.29 6.70 56.52 0.38 -5.91 16 19 C 0.08 1.41 5.01 -8.38 -0.04 1.37 16 20 C 0.47 5.99 2.43 37.16 0.09 6.08 16 21 F -0.17 -2.45 15.84 2.25 0.04 -2.42 16 22 F -0.18 -2.03 16.71 2.25 0.04 -1.99 16 23 F -0.18 -2.53 16.55 2.25 0.04 -2.49 16 24 H 0.10 0.79 4.92 -51.93 -0.26 0.53 16 25 H 0.08 0.56 7.66 -51.93 -0.40 0.16 16 26 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.11 7.66 -51.93 -0.40 0.71 16 29 H 0.10 2.22 3.57 -51.93 -0.19 2.03 16 30 H 0.11 1.08 4.83 -51.93 -0.25 0.83 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.26 7.82 8.73 -40.82 -0.36 7.47 16 34 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.06 1.22 3.45 -51.92 -0.18 1.04 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -31.37 285.00 -3.53 -34.90 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -3.83 Total: -0.75 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 0.14 Total: 8.39 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.22 Total: -50.84 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.11 Total: -6.90 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.11 Total: 20.84 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.37 -3.53 -34.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569497939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.674 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds