Wall clock time and date at job start Tue Mar 31 2020 02:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47070 * 2 1 4 4 C 1.50697 * 109.47407 * 120.00494 * 2 1 3 5 5 O 1.21276 * 120.00441 * 114.03753 * 4 2 1 6 6 N 1.34784 * 119.99884 * 294.03667 * 4 2 1 7 7 C 1.46497 * 119.99794 * 185.60528 * 6 4 2 8 8 C 1.46494 * 119.99762 * 5.60192 * 6 4 2 9 9 C 1.53496 * 114.20537 * 121.24480 * 8 6 4 10 10 N 1.47066 * 87.98583 * 87.71618 * 9 8 6 11 11 C 1.36938 * 136.05262 * 207.08295 * 10 9 8 12 12 H 1.08003 * 120.00383 * 354.88718 * 11 10 9 13 13 C 1.38816 * 119.99518 * 174.88349 * 11 10 9 14 14 N 1.31619 * 119.99583 * 184.07889 * 13 11 10 15 15 Si 1.86791 * 120.00236 * 4.07431 * 13 11 10 16 16 H 1.48499 * 109.47487 * 174.51958 * 15 13 11 17 17 H 1.48509 * 109.47391 * 294.51848 * 15 13 11 18 18 H 1.48499 * 109.47267 * 54.52016 * 15 13 11 19 19 C 1.47063 * 87.88386 * 27.34540 * 10 9 8 20 20 C 1.53000 * 109.46924 * 240.00732 * 2 1 3 21 21 F 1.39900 * 109.46809 * 299.99413 * 20 2 1 22 22 F 1.39898 * 109.47627 * 59.99565 * 20 2 1 23 23 F 1.39904 * 109.47091 * 179.97438 * 20 2 1 24 24 H 1.08995 * 109.46753 * 305.08352 * 1 2 3 25 25 H 1.08998 * 109.46962 * 65.08573 * 1 2 3 26 26 H 1.09000 * 109.46448 * 185.08863 * 1 2 3 27 27 H 1.08998 * 109.46980 * 274.79739 * 7 6 4 28 28 H 1.08999 * 109.47532 * 34.79992 * 7 6 4 29 29 H 1.09006 * 109.47098 * 154.80186 * 7 6 4 30 30 H 1.09002 * 113.28946 * 348.17200 * 8 6 4 31 31 H 1.08998 * 113.46731 * 332.93073 * 9 8 6 32 32 H 1.09003 * 113.46404 * 202.49527 * 9 8 6 33 33 H 0.96999 * 120.00749 * 5.00384 * 14 13 11 34 34 H 1.09001 * 113.47042 * 87.44318 * 19 10 9 35 35 H 1.09009 * 113.46440 * 217.87799 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6379 -1.7557 1.1223 6 7 1.8088 -0.1843 2.4509 7 6 2.4010 -0.8077 3.6370 8 6 0.9737 1.0111 2.5914 9 6 -0.2547 0.8184 3.4914 10 7 0.5919 1.1838 4.6370 11 6 0.6045 0.9138 5.9795 12 1 -0.2022 0.3502 6.4246 13 6 1.6541 1.3646 6.7682 14 7 1.7077 1.0374 8.0420 15 14 2.9904 2.4352 6.0219 16 1 3.9154 2.8897 7.0910 17 1 3.7472 1.6511 5.0130 18 1 2.3712 3.6161 5.3682 19 6 1.4151 1.9720 3.7076 20 6 2.0400 -0.7211 -1.2493 21 9 1.5737 -2.0401 -1.2494 22 9 1.5736 -0.0616 -2.3916 23 9 3.4390 -0.7206 -1.2497 24 1 -0.3633 0.5907 0.8409 25 1 -0.3633 0.4329 -0.9320 26 1 -0.3632 -1.0237 0.0912 27 1 1.7550 -1.6139 3.9846 28 1 3.3815 -1.2113 3.3842 29 1 2.5072 -0.0619 4.4248 30 1 0.7595 1.5012 1.6416 31 1 -0.6106 -0.2113 3.5255 32 1 -1.0528 1.5345 3.2956 33 1 1.0551 0.4230 8.4129 34 1 1.0572 2.9922 3.5689 35 1 2.4821 1.9251 3.9260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569497939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:46 Heat of formation + Delta-G solvation = -129.745327 kcal Electronic energy + Delta-G solvation = -23595.636692 eV Core-core repulsion = 19601.964947 eV Total energy + Delta-G solvation = -3993.671746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.10349 -48.59998 -48.55453 -41.77769 -39.82113 -35.82976 -34.97813 -34.30212 -30.11343 -28.21386 -27.51515 -26.95487 -24.94107 -23.76331 -22.00666 -20.44430 -19.85421 -19.49628 -19.21525 -18.34198 -18.12698 -17.28053 -16.79981 -16.19455 -16.01177 -15.77415 -15.43830 -15.39909 -15.07917 -14.97749 -14.74695 -14.68349 -14.56175 -14.24687 -14.07492 -13.50456 -13.35197 -13.24290 -12.97372 -12.91356 -12.67312 -12.33111 -12.29365 -12.10170 -11.26076 -11.18048 -11.07343 -10.90601 -9.75830 -9.14286 -8.57962 -5.42296 1.29067 1.37851 1.44474 1.48520 1.67496 1.90686 2.56253 2.64275 2.86265 2.98969 3.01719 3.24138 3.46646 3.51342 3.82140 3.94923 4.14648 4.19703 4.41628 4.55939 4.60500 4.66185 4.70834 4.72329 4.82148 4.92692 5.05833 5.15608 5.28821 5.30554 5.99464 6.27827 6.74016 6.85337 7.37052 8.28888 8.96027 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.032759 B = 0.005245 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.519507 B = 5337.458718 C = 5467.751483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.154 4.154 3 H 0.178 0.822 4 C 0.519 3.481 5 O -0.567 6.567 6 N -0.575 5.575 7 C 0.098 3.902 8 C 0.100 3.900 9 C 0.109 3.891 10 N -0.657 5.657 11 C -0.275 4.275 12 H 0.045 0.955 13 C -0.083 4.083 14 N -0.977 5.977 15 Si 1.103 2.897 16 H -0.315 1.315 17 H -0.268 1.268 18 H -0.255 1.255 19 C 0.068 3.932 20 C 0.470 3.530 21 F -0.186 7.186 22 F -0.171 7.171 23 F -0.189 7.189 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 3.106 -21.986 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.176 4.176 3 H 0.195 0.805 4 C 0.307 3.693 5 O -0.447 6.447 6 N -0.305 5.305 7 C -0.045 4.045 8 C -0.005 4.005 9 C -0.017 4.017 10 N -0.386 5.386 11 C -0.403 4.403 12 H 0.063 0.937 13 C -0.274 4.274 14 N -0.623 5.623 15 Si 0.930 3.070 16 H -0.244 1.244 17 H -0.195 1.195 18 H -0.180 1.180 19 C -0.056 4.056 20 C 0.416 3.584 21 F -0.167 7.167 22 F -0.152 7.152 23 F -0.171 7.171 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.185 0.815 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.155 3.328 -21.466 21.753 hybrid contribution -1.370 -1.500 0.583 2.114 sum -2.525 1.827 -20.883 21.115 Atomic orbital electron populations 1.22189 0.86925 1.05046 1.07355 1.22752 1.03166 1.03815 0.87878 0.80482 1.20382 0.79329 0.84850 0.84765 1.90775 1.43158 1.24085 1.86633 1.47364 1.48995 1.28349 1.05787 1.21547 0.96996 0.98465 0.87506 1.23037 0.91744 0.85483 1.00208 1.23085 0.94232 0.99690 0.84718 1.46203 1.33040 1.56329 1.03015 1.19865 1.05734 1.31774 0.82901 0.93672 1.26859 1.01780 1.03927 0.94884 1.71009 1.39655 1.37989 1.13624 0.83416 0.74091 0.76130 0.73324 1.24427 1.19487 1.18013 1.23607 0.96972 0.96759 0.88302 1.20025 0.75271 0.77603 0.85539 1.93182 1.88332 1.38422 1.96773 1.93195 1.88311 1.80456 1.53243 1.93187 1.30673 1.96400 1.96799 0.87270 0.87099 0.91817 0.94308 0.92241 0.90108 0.81539 0.94054 0.89442 0.94578 0.89236 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.49 71.98 0.61 -1.32 16 2 C -0.15 -2.73 1.88 -11.54 -0.02 -2.75 16 3 H 0.18 1.77 7.58 -2.39 -0.02 1.75 16 4 C 0.52 14.63 6.78 87.65 0.59 15.22 16 5 O -0.57 -20.90 14.58 -3.02 -0.04 -20.94 16 6 N -0.58 -17.10 3.12 -821.41 -2.56 -19.66 16 7 C 0.10 3.65 9.53 127.77 1.22 4.87 16 8 C 0.10 2.39 3.39 45.55 0.15 2.54 16 9 C 0.11 3.19 7.95 83.17 0.66 3.85 16 10 N -0.66 -27.04 2.38 -738.05 -1.76 -28.80 16 11 C -0.27 -14.70 10.50 84.03 0.88 -13.82 16 12 H 0.05 2.69 8.05 -2.91 -0.02 2.67 16 13 C -0.08 -4.69 5.46 84.86 0.46 -4.23 16 14 N -0.98 -61.43 13.70 21.65 0.30 -61.13 16 15 Si 1.10 50.04 24.15 68.60 1.66 51.70 16 16 H -0.32 -15.32 7.11 99.48 0.71 -14.61 16 17 H -0.27 -11.02 5.85 99.48 0.58 -10.44 16 18 H -0.26 -10.03 6.70 99.48 0.67 -9.36 16 19 C 0.07 2.18 5.01 83.26 0.42 2.60 16 20 C 0.47 10.32 2.43 71.98 0.17 10.50 16 21 F -0.19 -4.99 15.84 44.97 0.71 -4.28 16 22 F -0.17 -3.07 16.71 44.97 0.75 -2.31 16 23 F -0.19 -5.00 16.55 44.97 0.74 -4.26 16 24 H 0.11 1.04 4.92 -2.39 -0.01 1.03 16 25 H 0.11 0.80 7.66 -2.39 -0.02 0.78 16 26 H 0.06 1.00 7.95 -2.39 -0.02 0.98 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 2.19 7.66 -2.39 -0.02 2.17 16 29 H 0.08 3.42 3.57 -2.38 -0.01 3.42 16 30 H 0.17 2.08 4.83 -2.39 -0.01 2.07 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.25 15.59 8.73 -92.71 -0.81 14.78 16 34 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 35 H 0.05 1.72 3.45 -2.38 -0.01 1.72 16 Total: -1.00 -73.95 285.00 5.89 -68.06 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.93 Total: 4.16 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.15 Total: 17.46 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.02 Total: -109.59 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.04 Total: -20.94 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 2.21 Total: -10.85 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 1.66 Total: 51.70 kcal Total: -73.95 5.89 -68.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569497939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.684 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds