Wall clock time and date at job start Tue Mar 31 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47454 * 2 1 4 4 C 1.50698 * 109.46881 * 239.99594 * 2 1 3 5 5 H 1.08004 * 120.00197 * 240.00060 * 4 2 1 6 6 C 1.37879 * 120.00038 * 60.00707 * 4 2 1 7 7 N 1.31518 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00218 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47120 * 89.99357 * 8 6 4 10 10 H 1.48494 * 109.47298 * 209.99670 * 8 6 4 11 11 H 1.48500 * 109.46910 * 329.99518 * 8 6 4 12 12 C 1.50703 * 109.47251 * 120.00076 * 2 1 3 13 13 O 1.21274 * 120.00027 * 119.99399 * 12 2 1 14 14 N 1.34781 * 119.99672 * 299.99877 * 12 2 1 15 15 C 1.46493 * 119.99926 * 179.97438 * 14 12 2 16 16 C 1.50708 * 109.47036 * 179.97438 * 15 14 12 17 17 C 1.35193 * 119.59940 * 95.00189 * 16 15 14 18 18 C 1.41285 * 119.31858 * 179.97438 * 17 16 15 19 19 O 1.22295 * 120.67567 * 180.02562 * 18 17 16 20 20 C 1.41794 * 118.64118 * 0.02562 * 18 17 16 21 21 O 1.36097 * 120.41446 * 179.97438 * 20 18 17 22 22 C 1.35426 * 119.17436 * 359.97438 * 20 18 17 23 23 N 1.35455 * 119.60778 * 274.97519 * 16 15 14 24 24 C 1.46505 * 119.26341 * 0.02562 * 23 16 15 25 25 H 1.08997 * 109.47082 * 59.99957 * 1 2 3 26 26 H 1.08997 * 109.47454 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46685 * 300.00347 * 1 2 3 28 28 H 0.97001 * 120.00040 * 179.97438 * 7 6 4 29 29 H 0.96997 * 119.99881 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47212 * 59.99990 * 15 14 12 31 31 H 1.09001 * 109.47311 * 300.00031 * 15 14 12 32 32 H 1.07995 * 120.34495 * 0.25454 * 17 16 15 33 33 H 0.96702 * 113.99992 * 89.99808 * 21 20 18 34 34 H 1.08004 * 119.70147 * 179.97438 * 22 20 18 35 35 H 1.08993 * 109.46980 * 270.01858 * 24 23 16 36 36 H 1.08998 * 109.46982 * 30.02376 * 24 23 16 37 37 H 1.09001 * 109.46860 * 150.01657 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 6 2.0324 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6507 16 6 1.6929 -0.2298 4.8812 17 6 0.5622 -0.6585 5.4857 18 6 0.0974 0.0120 6.6392 19 8 -0.9222 -0.3551 7.2060 20 6 0.8374 1.1191 7.1262 21 8 0.4223 1.7916 8.2342 22 6 1.9624 1.4991 6.4750 23 7 2.3805 0.8306 5.3685 24 6 3.6017 1.2667 4.6869 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7089 1.1613 -3.4844 29 1 1.1494 0.5390 2.5435 30 1 3.2846 -0.9412 3.6509 31 1 1.8309 -1.9683 3.6506 32 1 0.0221 -1.5076 5.0936 33 1 0.7797 1.4434 9.0626 34 1 2.5324 2.3415 6.8383 35 1 4.4597 0.7432 5.1084 36 1 3.5247 1.0408 3.6234 37 1 3.7292 2.3408 4.8218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570867085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:56 Heat of formation + Delta-G solvation = -77.319327 kcal Electronic energy + Delta-G solvation = -21609.802433 eV Core-core repulsion = 18160.260789 eV Total energy + Delta-G solvation = -3449.541643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54028 -39.11058 -38.31871 -37.02463 -34.68616 -33.83970 -32.65025 -31.40114 -30.27117 -27.02212 -26.57523 -25.20187 -23.91680 -22.69765 -21.52655 -19.65730 -18.87348 -18.04156 -17.18626 -16.44226 -16.38953 -15.89282 -15.74870 -15.17455 -14.76613 -14.75128 -14.47960 -14.16990 -13.64282 -13.54149 -13.03359 -12.91684 -12.86322 -12.66535 -12.26073 -12.07579 -11.57350 -11.43422 -11.08932 -10.81303 -10.73186 -10.35722 -10.04537 -9.77491 -9.32598 -9.06636 -8.80285 -8.76326 -8.42183 -8.01405 -6.10451 -4.14511 0.90059 0.98959 2.14610 3.29183 3.35333 3.37554 3.42685 3.50556 3.72143 3.95559 3.97081 4.33386 4.41301 4.45871 4.76617 4.80878 5.08516 5.12033 5.20136 5.23148 5.45660 5.56835 5.63597 6.05847 6.11206 6.35780 6.54305 6.62090 6.68954 6.74434 6.85158 7.36788 7.37498 7.66844 7.85132 8.01349 8.03311 8.27076 8.93809 9.00649 9.51591 10.96951 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033119 B = 0.003556 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.221303 B = 7872.055781 C = 8049.709580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.053 0.947 4 C -0.504 4.504 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.539 6.539 14 N -0.746 5.746 15 C 0.151 3.849 16 C 0.154 3.846 17 C -0.262 4.262 18 C 0.376 3.624 19 O -0.518 6.518 20 C -0.065 4.065 21 O -0.471 6.471 22 C 0.110 3.890 23 N -0.462 5.462 24 C 0.049 3.951 25 H 0.094 0.906 26 H 0.032 0.968 27 H 0.012 0.988 28 H 0.262 0.738 29 H 0.400 0.600 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.380 0.620 34 H 0.168 0.832 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 3.966 16.977 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.071 0.929 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.414 6.414 14 N -0.403 5.403 15 C 0.026 3.974 16 C 0.045 3.955 17 C -0.288 4.288 18 C 0.268 3.732 19 O -0.404 6.404 20 C -0.116 4.116 21 O -0.278 6.278 22 C -0.017 4.017 23 N -0.151 5.151 24 C -0.092 4.092 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.234 0.766 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.172 0.828 33 H 0.234 0.766 34 H 0.185 0.815 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.752 3.564 16.525 17.857 hybrid contribution 0.346 -0.166 -0.342 0.514 sum 6.098 3.399 16.183 17.625 Atomic orbital electron populations 1.21763 0.96320 1.00027 1.01081 1.18891 0.94285 0.96792 0.88956 0.92919 1.21123 1.31292 1.12928 0.88917 0.90732 1.24952 0.95033 0.95018 0.99165 1.69866 1.36897 1.22998 1.23683 0.86442 0.79457 0.79269 0.81999 1.20605 1.21277 1.19735 1.22134 0.78249 0.84285 0.84031 1.90555 1.37768 1.26599 1.86473 1.46434 1.56132 1.33026 1.04714 1.20325 0.99883 0.96587 0.80581 1.20539 0.92341 0.87538 0.95091 1.22303 0.98596 1.06903 1.00956 1.17693 0.86263 0.83834 0.85446 1.90827 1.24037 1.66356 1.59190 1.19506 0.96917 1.00081 0.95138 1.84966 1.72517 1.55709 1.14591 1.22092 0.95507 0.96667 0.87463 1.42864 1.23384 1.25107 1.23721 1.22563 0.84487 1.02227 0.99933 0.88743 0.94831 0.96864 0.92862 0.76585 0.90077 0.88683 0.82811 0.76572 0.81484 0.89915 0.88130 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.50 -13.63 8.37 -34.44 -0.29 -13.91 16 5 H 0.07 2.13 6.75 -52.48 -0.35 1.77 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.52 10.62 7.15 -10.98 -0.08 10.54 16 13 O -0.54 -12.68 15.46 5.56 0.09 -12.60 16 14 N -0.75 -10.95 4.96 -61.47 -0.30 -11.26 16 15 C 0.15 1.78 4.86 -5.19 -0.03 1.75 16 16 C 0.15 1.61 6.01 -82.07 -0.49 1.11 16 17 C -0.26 -3.33 9.58 -39.51 -0.38 -3.71 16 18 C 0.38 5.61 6.77 -37.07 -0.25 5.36 16 19 O -0.52 -9.91 17.72 -10.92 -0.19 -10.10 16 20 C -0.06 -0.75 6.72 -39.23 -0.26 -1.02 16 21 O -0.47 -5.29 13.34 -35.62 -0.48 -5.76 16 22 C 0.11 0.88 10.20 -16.77 -0.17 0.71 16 23 N -0.46 -3.73 3.01 -120.01 -0.36 -4.09 16 24 C 0.05 0.27 9.74 59.85 0.58 0.85 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.40 5.33 7.88 -40.82 -0.32 5.00 16 30 H 0.08 0.88 6.85 -51.93 -0.36 0.52 16 31 H 0.10 1.19 8.02 -51.93 -0.42 0.77 16 32 H 0.15 1.95 8.04 -52.49 -0.42 1.53 16 33 H 0.38 2.45 9.07 45.56 0.41 2.86 16 34 H 0.17 0.74 8.02 -52.48 -0.42 0.31 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.73 6.15 -51.93 -0.32 0.41 16 37 H 0.09 0.30 8.00 -51.93 -0.42 -0.11 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -35.54 318.03 -5.95 -41.49 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.72 Total: 4.07 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.38 Total: 1.05 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.04 Total: -39.05 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.58 Total: -28.46 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.54 -5.95 -41.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570867085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.825 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds