Wall clock time and date at job start Tue Mar 31 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47366 * 2 1 4 4 C 1.50699 * 109.47071 * 119.99801 * 2 1 3 5 5 H 1.08001 * 120.00398 * 114.31932 * 4 2 1 6 6 C 1.37885 * 119.99930 * 294.31974 * 4 2 1 7 7 N 1.31515 * 120.00077 * 163.47837 * 6 4 2 8 8 Si 1.86794 * 119.99791 * 343.75013 * 6 4 2 9 9 H 1.48505 * 109.47371 * 269.72611 * 8 6 4 10 10 H 1.48496 * 109.47288 * 29.72613 * 8 6 4 11 11 H 1.48501 * 109.46898 * 149.72769 * 8 6 4 12 12 C 1.50701 * 109.47120 * 239.99304 * 2 1 3 13 13 O 1.21270 * 120.00441 * 240.00085 * 12 2 1 14 14 N 1.34781 * 119.99617 * 60.00259 * 12 2 1 15 15 C 1.46502 * 119.99998 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47124 * 180.02562 * 15 14 12 17 17 C 1.35193 * 119.60451 * 264.72108 * 16 15 14 18 18 C 1.41271 * 119.32547 * 180.02562 * 17 16 15 19 19 O 1.22292 * 120.68137 * 180.02562 * 18 17 16 20 20 C 1.41799 * 118.64248 * 359.97438 * 18 17 16 21 21 O 1.36096 * 120.41432 * 179.97438 * 20 18 17 22 22 C 1.35433 * 119.16847 * 0.02562 * 20 18 17 23 23 N 1.35454 * 119.60462 * 84.45168 * 16 15 14 24 24 C 1.46497 * 119.26842 * 359.97438 * 23 16 15 25 25 H 1.09002 * 109.47184 * 172.40543 * 1 2 3 26 26 H 1.09010 * 109.46658 * 292.40659 * 1 2 3 27 27 H 1.09001 * 109.46856 * 52.40313 * 1 2 3 28 28 H 0.97000 * 119.99759 * 355.08909 * 7 6 4 29 29 H 0.97001 * 119.99653 * 359.97438 * 14 12 2 30 30 H 1.08996 * 109.46776 * 299.99979 * 15 14 12 31 31 H 1.09000 * 109.46653 * 60.00035 * 15 14 12 32 32 H 1.08002 * 120.33808 * 359.97438 * 17 16 15 33 33 H 0.96705 * 114.00240 * 90.00648 * 21 20 18 34 34 H 1.07997 * 119.69502 * 179.97438 * 22 20 18 35 35 H 1.09002 * 109.46961 * 84.25398 * 24 23 16 36 36 H 1.09004 * 109.47487 * 204.25600 * 24 23 16 37 37 H 1.09000 * 109.47039 * 324.25347 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5755 -1.6389 1.1341 6 6 1.7985 -0.1749 2.4794 7 7 1.9359 -0.9234 3.5520 8 14 1.2792 1.6115 2.6473 9 1 2.4853 2.4668 2.7862 10 1 0.5181 2.0214 1.4399 11 1 0.4213 1.7667 3.8495 12 6 2.0324 -0.7106 -1.2304 13 8 2.7295 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.1946 -0.9412 -3.6507 16 6 1.6929 -0.2304 -4.8812 17 6 0.5652 -0.6625 -5.4890 18 6 0.1005 0.0079 -6.6424 19 8 -0.9169 -0.3617 -7.2116 20 6 0.8372 1.1187 -7.1261 21 8 0.4225 1.7905 -8.2347 22 6 1.9593 1.5021 -6.4717 23 7 2.3741 0.8372 -5.3618 24 6 3.5885 1.2810 -4.6731 25 1 -0.3634 -1.0187 -0.1358 26 1 -0.3633 0.3918 0.9502 27 1 -0.3633 0.6270 -0.8143 28 1 2.1318 -1.8691 3.4617 29 1 1.1488 0.5383 -2.5435 30 1 3.2845 -0.9416 -3.6508 31 1 1.8307 -1.9686 -3.6504 32 1 0.0256 -1.5120 -5.0972 33 1 -0.1784 2.5248 -8.0478 34 1 2.5271 2.3467 -6.8330 35 1 4.4385 0.6937 -5.0206 36 1 3.7633 2.3353 -4.8877 37 1 3.4674 1.1443 -3.5985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570867086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:59 Heat of formation + Delta-G solvation = -76.470811 kcal Electronic energy + Delta-G solvation = -21691.221283 eV Core-core repulsion = 18241.716434 eV Total energy + Delta-G solvation = -3449.504849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61101 -39.25234 -38.40729 -37.08250 -34.79848 -33.93062 -32.72945 -31.63433 -30.75651 -27.10136 -26.71693 -24.92288 -23.98583 -22.67646 -21.55003 -19.66310 -18.92369 -18.10329 -17.55034 -17.09154 -16.53224 -16.14080 -15.87859 -15.28477 -14.93893 -14.80807 -14.34679 -13.97213 -13.72359 -13.61667 -13.30135 -13.06223 -12.95326 -12.73663 -12.38347 -12.15373 -11.87410 -11.62258 -11.48575 -11.16137 -10.65154 -10.37817 -9.85116 -9.79583 -9.39779 -8.98672 -8.93281 -8.86409 -8.34481 -8.07951 -6.52287 -4.12709 0.82990 0.92189 2.07367 3.28681 3.30068 3.32523 3.36003 3.48471 3.62534 3.84521 3.92105 4.25888 4.38622 4.42469 4.70363 4.74662 5.01173 5.04814 5.12498 5.19385 5.36310 5.49576 5.56493 5.77956 6.04162 6.08509 6.28656 6.30037 6.40910 6.54597 6.55386 6.77367 7.11321 7.32064 7.60538 7.96967 8.02683 8.39759 8.85668 8.94774 9.56490 10.88117 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.003846 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.718096 B = 7278.629716 C = 7313.210943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.005 3.995 3 H 0.046 0.954 4 C -0.593 4.593 5 H 0.075 0.925 6 C 0.032 3.968 7 N -0.902 5.902 8 Si 1.041 2.959 9 H -0.286 1.286 10 H -0.273 1.273 11 H -0.284 1.284 12 C 0.529 3.471 13 O -0.529 6.529 14 N -0.747 5.747 15 C 0.151 3.849 16 C 0.153 3.847 17 C -0.261 4.261 18 C 0.376 3.624 19 O -0.517 6.517 20 C -0.064 4.064 21 O -0.472 6.472 22 C 0.110 3.890 23 N -0.462 5.462 24 C 0.050 3.950 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.027 0.973 28 H 0.271 0.729 29 H 0.398 0.602 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.382 0.618 34 H 0.168 0.832 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 9.781 -18.160 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.016 4.016 3 H 0.064 0.936 4 C -0.631 4.631 5 H 0.093 0.907 6 C -0.173 4.173 7 N -0.536 5.536 8 Si 0.869 3.131 9 H -0.213 1.213 10 H -0.199 1.199 11 H -0.210 1.210 12 C 0.318 3.682 13 O -0.402 6.402 14 N -0.404 5.404 15 C 0.027 3.973 16 C 0.044 3.956 17 C -0.287 4.287 18 C 0.267 3.733 19 O -0.403 6.403 20 C -0.116 4.116 21 O -0.279 6.279 22 C -0.018 4.018 23 N -0.151 5.151 24 C -0.091 4.091 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.233 0.767 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.172 0.828 33 H 0.236 0.764 34 H 0.185 0.815 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.167 9.666 -17.430 20.048 hybrid contribution -0.069 -0.394 -1.010 1.086 sum 2.098 9.272 -18.440 20.746 Atomic orbital electron populations 1.22132 0.96898 1.00349 1.00274 1.19254 0.93677 0.96914 0.91796 0.93595 1.21946 1.40199 1.11402 0.89525 0.90675 1.25746 0.94284 1.05370 0.91919 1.70774 1.43883 1.08133 1.30796 0.84137 0.77160 0.75754 0.76079 1.21277 1.19871 1.21032 1.21628 0.78576 0.84357 0.83600 1.90588 1.37142 1.26212 1.86271 1.46425 1.56140 1.33044 1.04808 1.20334 1.00005 0.96591 0.80392 1.20509 0.92400 0.87362 0.95308 1.22309 0.98524 1.06471 1.01391 1.17692 0.86057 0.84559 0.84961 1.90830 1.24655 1.66195 1.58612 1.19506 0.98025 1.00096 0.93956 1.84950 1.67266 1.48617 1.27047 1.22106 0.96913 0.96435 0.86307 1.42866 1.24223 1.25324 1.22700 1.22553 0.84854 1.02061 0.99653 0.93296 0.92179 0.95439 0.91882 0.76740 0.89959 0.88580 0.82802 0.76409 0.81456 0.89923 0.88762 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.33 37.16 0.31 -2.38 16 2 C 0.01 0.12 2.19 -92.92 -0.20 -0.08 16 3 H 0.05 0.93 6.72 -51.93 -0.35 0.58 16 4 C -0.59 -16.20 8.64 -34.44 -0.30 -16.50 16 5 H 0.08 2.35 7.02 -52.49 -0.37 1.98 16 6 C 0.03 0.89 5.30 -17.82 -0.09 0.79 16 7 N -0.90 -27.12 13.70 55.43 0.76 -26.36 16 8 Si 1.04 23.20 26.18 -169.99 -4.45 18.75 16 9 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.31 5.63 56.52 0.32 -4.99 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.53 10.34 7.14 -10.98 -0.08 10.26 16 13 O -0.53 -12.48 15.47 5.57 0.09 -12.40 16 14 N -0.75 -10.15 4.92 -61.47 -0.30 -10.45 16 15 C 0.15 1.70 4.88 -5.19 -0.03 1.68 16 16 C 0.15 1.51 6.01 -82.08 -0.49 1.01 16 17 C -0.26 -3.17 9.58 -39.51 -0.38 -3.55 16 18 C 0.38 5.40 6.77 -37.07 -0.25 5.15 16 19 O -0.52 -9.62 17.72 -10.93 -0.19 -9.81 16 20 C -0.06 -0.71 6.72 -39.22 -0.26 -0.98 16 21 O -0.47 -5.07 13.34 -35.62 -0.48 -5.55 16 22 C 0.11 0.82 10.20 -16.76 -0.17 0.65 16 23 N -0.46 -3.46 3.01 -120.01 -0.36 -3.82 16 24 C 0.05 0.24 9.58 59.85 0.57 0.82 16 25 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 26 H 0.06 1.22 5.23 -51.92 -0.27 0.95 16 27 H 0.03 0.42 7.78 -51.93 -0.40 0.02 16 28 H 0.27 8.23 8.73 -40.82 -0.36 7.87 16 29 H 0.40 4.60 8.04 -40.82 -0.33 4.27 16 30 H 0.08 0.87 6.98 -51.93 -0.36 0.51 16 31 H 0.10 1.17 8.02 -51.93 -0.42 0.75 16 32 H 0.15 1.86 8.04 -52.49 -0.42 1.44 16 33 H 0.38 2.38 9.07 45.56 0.41 2.79 16 34 H 0.17 0.65 7.97 -52.49 -0.42 0.23 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.22 7.91 -51.93 -0.41 -0.20 16 37 H 0.10 0.63 6.45 -51.93 -0.34 0.29 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -37.59 313.73 -5.34 -42.93 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -3.75 Total: 5.10 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.37 Total: -3.13 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.10 Total: -40.63 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.58 Total: -27.75 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.45 Total: 18.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.59 -5.34 -42.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570867086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.544 kcal (2) G-P(sol) polarization free energy of solvation -37.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds