Wall clock time and date at job start Tue Mar 31 2020 01:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47366 * 2 1 4 4 C 1.50699 * 109.47071 * 119.99801 * 2 1 3 5 5 H 1.08001 * 120.00398 * 114.31932 * 4 2 1 6 6 C 1.37885 * 119.99930 * 294.31974 * 4 2 1 7 7 N 1.31515 * 120.00077 * 163.47837 * 6 4 2 8 8 Si 1.86794 * 119.99791 * 343.75013 * 6 4 2 9 9 H 1.48505 * 109.47371 * 269.72611 * 8 6 4 10 10 H 1.48496 * 109.47288 * 29.72613 * 8 6 4 11 11 H 1.48501 * 109.46898 * 149.72769 * 8 6 4 12 12 C 1.50701 * 109.47120 * 239.99304 * 2 1 3 13 13 O 1.21270 * 120.00441 * 240.00085 * 12 2 1 14 14 N 1.34781 * 119.99617 * 60.00259 * 12 2 1 15 15 C 1.46502 * 119.99998 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47124 * 180.02562 * 15 14 12 17 17 C 1.35193 * 119.60451 * 264.72108 * 16 15 14 18 18 C 1.41271 * 119.32547 * 180.02562 * 17 16 15 19 19 O 1.22292 * 120.68137 * 180.02562 * 18 17 16 20 20 C 1.41799 * 118.64248 * 359.97438 * 18 17 16 21 21 O 1.36096 * 120.41432 * 179.97438 * 20 18 17 22 22 C 1.35433 * 119.16847 * 0.02562 * 20 18 17 23 23 N 1.35454 * 119.60462 * 84.45168 * 16 15 14 24 24 C 1.46497 * 119.26842 * 359.97438 * 23 16 15 25 25 H 1.09002 * 109.47184 * 172.40543 * 1 2 3 26 26 H 1.09010 * 109.46658 * 292.40659 * 1 2 3 27 27 H 1.09001 * 109.46856 * 52.40313 * 1 2 3 28 28 H 0.97000 * 119.99759 * 355.08909 * 7 6 4 29 29 H 0.97001 * 119.99653 * 359.97438 * 14 12 2 30 30 H 1.08996 * 109.46776 * 299.99979 * 15 14 12 31 31 H 1.09000 * 109.46653 * 60.00035 * 15 14 12 32 32 H 1.08002 * 120.33808 * 359.97438 * 17 16 15 33 33 H 0.96705 * 114.00240 * 90.00648 * 21 20 18 34 34 H 1.07997 * 119.69502 * 179.97438 * 22 20 18 35 35 H 1.09002 * 109.46961 * 84.25398 * 24 23 16 36 36 H 1.09004 * 109.47487 * 204.25600 * 24 23 16 37 37 H 1.09000 * 109.47039 * 324.25347 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5755 -1.6389 1.1341 6 6 1.7985 -0.1749 2.4794 7 7 1.9359 -0.9234 3.5520 8 14 1.2792 1.6115 2.6473 9 1 2.4853 2.4668 2.7862 10 1 0.5181 2.0214 1.4399 11 1 0.4213 1.7667 3.8495 12 6 2.0324 -0.7106 -1.2304 13 8 2.7295 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.1946 -0.9412 -3.6507 16 6 1.6929 -0.2304 -4.8812 17 6 0.5652 -0.6625 -5.4890 18 6 0.1005 0.0079 -6.6424 19 8 -0.9169 -0.3617 -7.2116 20 6 0.8372 1.1187 -7.1261 21 8 0.4225 1.7905 -8.2347 22 6 1.9593 1.5021 -6.4717 23 7 2.3741 0.8372 -5.3618 24 6 3.5885 1.2810 -4.6731 25 1 -0.3634 -1.0187 -0.1358 26 1 -0.3633 0.3918 0.9502 27 1 -0.3633 0.6270 -0.8143 28 1 2.1318 -1.8691 3.4617 29 1 1.1488 0.5383 -2.5435 30 1 3.2845 -0.9416 -3.6508 31 1 1.8307 -1.9686 -3.6504 32 1 0.0256 -1.5120 -5.0972 33 1 -0.1784 2.5248 -8.0478 34 1 2.5271 2.3467 -6.8330 35 1 4.4385 0.6937 -5.0206 36 1 3.7633 2.3353 -4.8877 37 1 3.4674 1.1443 -3.5985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570867086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:57 Heat of formation + Delta-G solvation = -107.822021 kcal Electronic energy + Delta-G solvation = -21692.580774 eV Core-core repulsion = 18241.716434 eV Total energy + Delta-G solvation = -3450.864339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44763 -40.68988 -39.37825 -37.95603 -36.04696 -35.79381 -33.68955 -33.22190 -31.93075 -27.90709 -27.58291 -26.78127 -24.78682 -24.23402 -22.56645 -21.20253 -19.65689 -19.52154 -18.93222 -18.25435 -17.47332 -17.33903 -16.90161 -16.32618 -16.21169 -15.65161 -15.53563 -15.20218 -15.01764 -14.68869 -14.62454 -14.30735 -14.02292 -13.80320 -13.66259 -13.31573 -13.16904 -12.92383 -12.74249 -12.37874 -12.32148 -12.06517 -11.40794 -10.94862 -10.83258 -10.49257 -10.40288 -10.33167 -10.19167 -8.95883 -8.73651 -6.34437 -0.08113 0.16434 1.38093 1.53606 1.60313 1.75591 1.80536 2.20459 2.58599 2.59670 2.98090 3.11338 3.17711 3.63112 3.75892 4.02640 4.11044 4.31716 4.38184 4.41188 4.48704 4.51218 4.63607 4.69618 4.72067 4.80180 4.85655 5.15847 5.20304 5.29759 5.52649 5.58980 5.75886 5.85306 6.08758 6.58477 6.64593 6.68582 7.07869 7.35917 7.47908 8.65690 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.003846 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.718096 B = 7278.629716 C = 7313.210943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 H 0.077 0.923 4 C -0.599 4.599 5 H 0.016 0.984 6 C -0.024 4.024 7 N -0.942 5.942 8 Si 1.086 2.914 9 H -0.272 1.272 10 H -0.217 1.217 11 H -0.293 1.293 12 C 0.533 3.467 13 O -0.580 6.580 14 N -0.720 5.720 15 C 0.154 3.846 16 C 0.177 3.823 17 C -0.279 4.279 18 C 0.353 3.647 19 O -0.589 6.589 20 C -0.093 4.093 21 O -0.486 6.486 22 C 0.150 3.850 23 N -0.446 5.446 24 C 0.039 3.961 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.248 0.752 29 H 0.414 0.586 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.398 0.602 34 H 0.221 0.779 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 13.974 -19.884 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.637 4.637 5 H 0.034 0.966 6 C -0.221 4.221 7 N -0.577 5.577 8 Si 0.905 3.095 9 H -0.198 1.198 10 H -0.140 1.140 11 H -0.220 1.220 12 C 0.322 3.678 13 O -0.458 6.458 14 N -0.375 5.375 15 C 0.030 3.970 16 C 0.066 3.934 17 C -0.305 4.305 18 C 0.250 3.750 19 O -0.481 6.481 20 C -0.144 4.144 21 O -0.295 6.295 22 C 0.021 3.979 23 N -0.132 5.132 24 C -0.100 4.100 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.251 0.749 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.254 0.746 34 H 0.237 0.763 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.152 13.904 -19.207 23.920 hybrid contribution -0.196 -1.742 -0.476 1.816 sum 2.956 12.162 -19.683 23.326 Atomic orbital electron populations 1.22045 0.94720 1.00642 1.01987 1.19238 0.95224 0.97684 0.90308 0.90505 1.22065 1.39262 1.09636 0.92719 0.96581 1.27500 0.93532 1.09664 0.91382 1.70941 1.47296 1.07163 1.32316 0.83669 0.77884 0.69875 0.78066 1.19769 1.13971 1.21975 1.21202 0.78136 0.83571 0.84891 1.90587 1.39651 1.28399 1.87164 1.45933 1.54970 1.32886 1.03749 1.20370 1.00925 0.96091 0.79624 1.20094 0.91473 0.87642 0.94237 1.22166 0.99745 1.06890 1.01671 1.18292 0.85749 0.85715 0.85214 1.90788 1.27730 1.68705 1.60920 1.19365 0.99493 1.00206 0.95293 1.84908 1.67815 1.49353 1.27427 1.22613 0.94942 0.96019 0.84293 1.43247 1.24195 1.23506 1.22272 1.22932 0.83482 1.04904 0.98671 0.94911 0.92788 0.90315 0.94304 0.74853 0.88262 0.89552 0.84021 0.74563 0.76264 0.88270 0.84741 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 8.33 71.98 0.60 -4.23 16 2 C 0.00 -0.11 2.19 -12.29 -0.03 -0.14 16 3 H 0.08 2.72 6.72 -2.39 -0.02 2.71 16 4 C -0.60 -33.41 8.64 25.60 0.22 -33.19 16 5 H 0.02 1.06 7.02 -2.91 -0.02 1.04 16 6 C -0.02 -1.35 5.30 84.66 0.45 -0.90 16 7 N -0.94 -58.93 13.70 21.45 0.29 -58.63 16 8 Si 1.09 44.66 26.18 68.60 1.80 46.46 16 9 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.22 -6.96 5.63 99.48 0.56 -6.40 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.53 20.02 7.14 87.66 0.63 20.65 16 13 O -0.58 -27.77 15.47 -3.00 -0.05 -27.82 16 14 N -0.72 -17.26 4.92 -466.79 -2.29 -19.55 16 15 C 0.15 3.07 4.88 85.63 0.42 3.49 16 16 C 0.18 2.96 6.01 41.30 0.25 3.21 16 17 C -0.28 -6.61 9.58 22.31 0.21 -6.40 16 18 C 0.35 10.19 6.77 23.90 0.16 10.35 16 19 O -0.59 -23.22 17.72 8.62 0.15 -23.07 16 20 C -0.09 -1.86 6.72 22.50 0.15 -1.71 16 21 O -0.49 -9.59 13.34 -79.74 -1.06 -10.66 16 22 C 0.15 1.45 10.20 83.42 0.85 2.30 16 23 N -0.45 -4.41 3.01 -533.61 -1.60 -6.01 16 24 C 0.04 0.13 9.58 127.77 1.22 1.36 16 25 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 26 H 0.05 1.99 5.23 -2.38 -0.01 1.98 16 27 H 0.08 1.99 7.78 -2.39 -0.02 1.97 16 28 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 29 H 0.41 7.55 8.04 -92.71 -0.75 6.80 16 30 H 0.10 1.77 6.98 -2.39 -0.02 1.75 16 31 H 0.09 2.01 8.02 -2.39 -0.02 1.99 16 32 H 0.14 3.59 8.04 -2.91 -0.02 3.56 16 33 H 0.40 4.27 9.07 -74.05 -0.67 3.60 16 34 H 0.22 -0.03 7.97 -2.91 -0.02 -0.06 16 35 H 0.10 0.16 8.14 -2.39 -0.02 0.15 16 36 H 0.13 -0.47 7.91 -2.39 -0.02 -0.49 16 37 H 0.09 0.61 6.45 -2.39 -0.02 0.60 16 Total: -1.00 -92.26 313.73 1.90 -90.36 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.47 Total: 14.12 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.14 Total: -5.20 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -3.61 Total: -84.20 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: -0.96 Total: -61.54 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.80 Total: 46.46 kcal Total: -92.26 1.90 -90.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570867086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.458 kcal (2) G-P(sol) polarization free energy of solvation -92.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds