Wall clock time and date at job start Tue Mar 31 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47384 * 120.00131 * 2 1 3 5 5 H 1.07998 * 120.00315 * 119.99747 * 4 2 1 6 6 C 1.37877 * 119.99781 * 300.00459 * 4 2 1 7 7 N 1.31523 * 119.99943 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00536 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46949 * 89.99824 * 8 6 4 10 10 H 1.48494 * 109.47553 * 210.00173 * 8 6 4 11 11 H 1.48503 * 109.46950 * 330.00687 * 8 6 4 12 12 N 1.46496 * 109.46844 * 240.00459 * 2 1 3 13 13 C 1.34777 * 120.00266 * 85.00291 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.87844 * 40.42192 * 15 13 12 17 17 C 1.54318 * 109.88696 * 279.21996 * 15 13 12 18 18 C 1.55142 * 103.01589 * 218.31314 * 17 15 13 19 19 H 1.09007 * 111.02339 * 277.54966 * 18 17 15 20 20 C 1.52996 * 110.99071 * 153.74805 * 18 17 15 21 21 F 1.39898 * 109.46953 * 306.27824 * 20 18 17 22 22 F 1.39906 * 109.47331 * 66.27630 * 20 18 17 23 23 F 1.39905 * 109.47223 * 186.27652 * 20 18 17 24 24 C 1.54905 * 101.65523 * 35.65382 * 18 17 15 25 25 N 1.47445 * 109.88601 * 161.45048 * 15 13 12 26 26 H 1.09002 * 109.47121 * 299.99896 * 1 2 3 27 27 H 1.09001 * 109.47093 * 59.99684 * 1 2 3 28 28 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00114 * 180.02562 * 7 6 4 30 30 H 0.96999 * 119.99691 * 264.99277 * 12 2 1 31 31 H 1.08994 * 110.71037 * 336.69391 * 17 15 13 32 32 H 1.09000 * 110.70608 * 99.93205 * 17 15 13 33 33 H 1.09001 * 110.37624 * 204.09803 * 24 18 17 34 34 H 1.09002 * 110.37265 * 81.75707 * 24 18 17 35 35 H 1.00896 * 110.99926 * 356.15053 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4826 7 7 2.1372 -0.8597 3.5565 8 14 0.6257 1.2797 2.6542 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9952 3.9071 11 1 0.8488 2.1772 1.4923 12 7 2.0182 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8634 1.1598 -2.4103 15 6 2.6498 -0.7284 -3.5875 16 1 2.2136 -1.7257 -3.6440 17 6 4.1893 -0.8267 -3.5446 18 6 4.5955 -0.5952 -5.0239 19 1 4.5106 -1.5158 -5.6014 20 6 6.0099 -0.0198 -5.1202 21 9 6.1012 1.1286 -4.3264 22 9 6.9321 -0.9714 -4.6714 23 9 6.2898 0.3095 -6.4508 24 6 3.5413 0.4445 -5.4789 25 7 2.2948 0.0434 -4.7926 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9026 -0.5286 4.4375 30 1 2.2490 -1.6316 -1.1527 31 1 4.6074 -0.0502 -2.9041 32 1 4.5032 -1.8151 -3.2089 33 1 3.4094 0.4030 -6.5601 34 1 3.8389 1.4467 -5.1703 35 1 1.7377 0.8502 -4.5541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575914990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:27 Heat of formation + Delta-G solvation = -189.650924 kcal Electronic energy + Delta-G solvation = -22667.872036 eV Core-core repulsion = 18671.602589 eV Total energy + Delta-G solvation = -3996.269447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.29357 -47.78760 -47.76438 -40.07629 -37.70248 -35.11276 -32.52636 -31.53717 -30.65507 -28.99833 -25.46967 -25.23580 -23.19216 -21.32000 -20.78506 -19.77146 -18.79125 -18.40971 -18.30553 -17.03177 -16.33622 -16.12517 -15.56027 -15.01045 -14.71145 -14.54228 -14.35573 -14.21127 -14.01732 -13.92308 -13.85156 -13.50200 -13.27220 -12.95055 -12.48795 -12.25651 -12.22376 -11.93554 -11.86318 -11.73247 -11.41911 -11.25139 -10.87324 -10.25002 -9.80627 -9.44601 -9.30694 -8.82538 -8.67288 -8.29765 -6.26190 -4.29433 2.47138 2.94269 3.19352 3.31787 3.35266 3.51008 3.55977 3.65885 3.82956 4.20745 4.26711 4.38044 4.51846 4.73063 4.94251 5.02328 5.08602 5.24958 5.42789 5.44578 5.59496 5.77001 6.24025 6.29809 6.47052 6.50504 6.77571 7.08430 7.11700 7.19111 7.43303 8.02962 8.41363 8.65376 8.76947 9.34025 10.85865 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.004305 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.922559 B = 6501.818733 C = 6922.103890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.692 5.692 13 C 0.490 3.510 14 O -0.555 6.555 15 C 0.059 3.941 16 H 0.112 0.888 17 C -0.125 4.125 18 C -0.148 4.148 19 H 0.131 0.869 20 C 0.461 3.539 21 F -0.178 7.178 22 F -0.181 7.181 23 F -0.183 7.183 24 C 0.053 3.947 25 N -0.659 5.659 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.268 0.732 30 H 0.397 0.603 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -1.211 -18.103 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.339 5.339 13 C 0.273 3.727 14 O -0.435 6.435 15 C -0.054 4.054 16 H 0.129 0.871 17 C -0.164 4.164 18 C -0.168 4.168 19 H 0.149 0.851 20 C 0.406 3.594 21 F -0.160 7.160 22 F -0.162 7.162 23 F -0.164 7.164 24 C -0.076 4.076 25 N -0.293 5.293 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.312 -0.903 -18.303 18.825 hybrid contribution 0.119 1.020 0.939 1.392 sum 4.431 0.117 -17.363 17.920 Atomic orbital electron populations 1.22443 0.99117 1.00958 0.99369 1.19148 0.90272 0.94661 0.82772 0.93395 1.21013 1.33465 1.14509 0.88490 0.90135 1.24830 0.95447 0.96682 0.95517 1.69865 1.44749 1.40059 0.98081 0.86874 0.80558 0.83567 0.77472 1.20240 1.22093 1.18756 1.46195 1.64060 1.13924 1.09719 1.20879 0.78616 0.87749 0.85463 1.90647 1.52114 1.15925 1.84791 1.22346 0.94583 0.99661 0.88825 0.87053 1.22828 0.94738 1.05241 0.93621 1.23661 0.89367 1.02505 1.01242 0.85097 1.20308 0.89220 0.76310 0.73532 1.93206 1.96789 1.51716 1.74267 1.93201 1.69573 1.64265 1.89196 1.93187 1.94913 1.92920 1.35427 1.22855 0.88102 0.96111 1.00539 1.62239 1.16744 1.28546 1.21775 0.93382 0.94552 0.92710 0.92214 0.76896 0.89190 0.88185 0.88616 0.92293 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.96 37.16 0.33 -3.16 16 2 C 0.23 5.42 2.15 -69.09 -0.15 5.27 16 3 H 0.05 1.23 6.63 -51.93 -0.34 0.89 16 4 C -0.54 -14.13 9.31 -34.44 -0.32 -14.45 16 5 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.00 13.96 55.43 0.77 -25.22 16 8 Si 0.89 21.46 24.37 -169.99 -4.14 17.32 16 9 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 12 N -0.69 -12.84 5.07 -54.94 -0.28 -13.12 16 13 C 0.49 8.49 6.86 -10.98 -0.08 8.41 16 14 O -0.56 -11.60 15.26 5.56 0.08 -11.52 16 15 C 0.06 0.74 3.90 -67.87 -0.26 0.48 16 16 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.13 -1.39 5.80 -24.91 -0.14 -1.53 16 18 C -0.15 -1.39 3.04 -88.48 -0.27 -1.66 16 19 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 20 C 0.46 4.88 2.77 37.16 0.10 4.98 16 21 F -0.18 -2.25 15.74 2.25 0.04 -2.21 16 22 F -0.18 -2.01 17.23 2.25 0.04 -1.97 16 23 F -0.18 -1.90 17.13 2.25 0.04 -1.86 16 24 C 0.05 0.55 6.83 -2.30 -0.02 0.53 16 25 N -0.66 -8.01 7.34 -105.03 -0.77 -8.78 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.40 6.37 8.54 -40.82 -0.35 6.02 16 31 H 0.09 1.19 7.02 -51.93 -0.36 0.83 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.66 7.48 -51.93 -0.39 0.28 16 35 H 0.36 5.01 7.18 -39.29 -0.28 4.73 16 LS Contribution 296.95 15.07 4.48 4.48 Total: -1.00 -30.36 296.95 -4.68 -35.04 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.03 Total: 6.89 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.90 Total: 0.96 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.28 Total: -47.12 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.11 Total: -6.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.36 -4.68 -35.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.608 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds