Wall clock time and date at job start Tue Mar 31 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47384 * 120.00131 * 2 1 3 5 5 H 1.07998 * 120.00315 * 119.99747 * 4 2 1 6 6 C 1.37877 * 119.99781 * 300.00459 * 4 2 1 7 7 N 1.31523 * 119.99943 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00536 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46949 * 89.99824 * 8 6 4 10 10 H 1.48494 * 109.47553 * 210.00173 * 8 6 4 11 11 H 1.48503 * 109.46950 * 330.00687 * 8 6 4 12 12 N 1.46496 * 109.46844 * 240.00459 * 2 1 3 13 13 C 1.34777 * 120.00266 * 85.00291 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.87844 * 40.42192 * 15 13 12 17 17 C 1.54318 * 109.88696 * 279.21996 * 15 13 12 18 18 C 1.55142 * 103.01589 * 218.31314 * 17 15 13 19 19 H 1.09007 * 111.02339 * 277.54966 * 18 17 15 20 20 C 1.52996 * 110.99071 * 153.74805 * 18 17 15 21 21 F 1.39898 * 109.46953 * 306.27824 * 20 18 17 22 22 F 1.39906 * 109.47331 * 66.27630 * 20 18 17 23 23 F 1.39905 * 109.47223 * 186.27652 * 20 18 17 24 24 C 1.54905 * 101.65523 * 35.65382 * 18 17 15 25 25 N 1.47445 * 109.88601 * 161.45048 * 15 13 12 26 26 H 1.09002 * 109.47121 * 299.99896 * 1 2 3 27 27 H 1.09001 * 109.47093 * 59.99684 * 1 2 3 28 28 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00114 * 180.02562 * 7 6 4 30 30 H 0.96999 * 119.99691 * 264.99277 * 12 2 1 31 31 H 1.08994 * 110.71037 * 336.69391 * 17 15 13 32 32 H 1.09000 * 110.70608 * 99.93205 * 17 15 13 33 33 H 1.09001 * 110.37624 * 204.09803 * 24 18 17 34 34 H 1.09002 * 110.37265 * 81.75707 * 24 18 17 35 35 H 1.00896 * 110.99926 * 356.15053 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4826 7 7 2.1372 -0.8597 3.5565 8 14 0.6257 1.2797 2.6542 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9952 3.9071 11 1 0.8488 2.1772 1.4923 12 7 2.0182 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8634 1.1598 -2.4103 15 6 2.6498 -0.7284 -3.5875 16 1 2.2136 -1.7257 -3.6440 17 6 4.1893 -0.8267 -3.5446 18 6 4.5955 -0.5952 -5.0239 19 1 4.5106 -1.5158 -5.6014 20 6 6.0099 -0.0198 -5.1202 21 9 6.1012 1.1286 -4.3264 22 9 6.9321 -0.9714 -4.6714 23 9 6.2898 0.3095 -6.4508 24 6 3.5413 0.4445 -5.4789 25 7 2.2948 0.0434 -4.7926 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9026 -0.5286 4.4375 30 1 2.2490 -1.6316 -1.1527 31 1 4.6074 -0.0502 -2.9041 32 1 4.5032 -1.8151 -3.2089 33 1 3.4094 0.4030 -6.5601 34 1 3.8389 1.4467 -5.1703 35 1 1.7377 0.8502 -4.5541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575914990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:26 Heat of formation + Delta-G solvation = -213.354324 kcal Electronic energy + Delta-G solvation = -22668.899893 eV Core-core repulsion = 18671.602589 eV Total energy + Delta-G solvation = -3997.297304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.15555 -48.66720 -48.62250 -41.33312 -38.88091 -36.82632 -34.45522 -32.52420 -32.11130 -30.21106 -27.24229 -26.33299 -24.48381 -22.30948 -22.14014 -21.21857 -19.77658 -19.45370 -19.25513 -18.53216 -17.63918 -17.50990 -17.04562 -16.18619 -16.01155 -15.56448 -15.43440 -15.33194 -15.08237 -14.93442 -14.82357 -14.79129 -14.65858 -14.38299 -14.13728 -13.70097 -13.45171 -13.23425 -13.10980 -12.82291 -12.77002 -12.51675 -12.20925 -12.15609 -11.64253 -11.30165 -10.92235 -10.87061 -9.94803 -9.68063 -8.39358 -6.45208 1.26005 1.34602 1.43050 1.51219 1.73255 2.24536 2.31883 2.66295 2.71419 2.96943 2.97739 3.27576 3.46894 3.66538 3.80791 3.98726 4.06556 4.25595 4.43619 4.54491 4.59811 4.68193 4.69520 4.80216 4.88489 4.98123 5.30304 5.40386 5.56408 5.58962 6.07092 6.10765 6.56731 6.79218 7.16413 7.35389 8.75722 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.004305 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.922559 B = 6501.818733 C = 6922.103890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.020 0.980 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.937 3.063 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.265 1.265 12 N -0.691 5.691 13 C 0.488 3.512 14 O -0.593 6.593 15 C 0.070 3.930 16 H 0.142 0.858 17 C -0.127 4.127 18 C -0.134 4.134 19 H 0.164 0.836 20 C 0.461 3.539 21 F -0.195 7.195 22 F -0.183 7.183 23 F -0.181 7.181 24 C 0.050 3.950 25 N -0.656 5.656 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.270 0.730 30 H 0.411 0.589 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.043 0.957 35 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -1.963 -20.013 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.038 0.962 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.765 3.235 9 H -0.184 1.184 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.340 5.340 13 C 0.274 3.726 14 O -0.475 6.475 15 C -0.043 4.043 16 H 0.160 0.840 17 C -0.166 4.166 18 C -0.154 4.154 19 H 0.182 0.818 20 C 0.406 3.594 21 F -0.176 7.176 22 F -0.165 7.165 23 F -0.162 7.162 24 C -0.079 4.079 25 N -0.289 5.289 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.247 0.753 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.062 0.938 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.829 -1.684 -20.246 20.673 hybrid contribution 0.358 1.245 1.474 1.963 sum 4.187 -0.440 -18.771 19.238 Atomic orbital electron populations 1.22332 0.97667 1.01839 0.99418 1.18778 0.91317 0.93079 0.83349 0.96238 1.21247 1.32358 1.13624 0.89810 0.92204 1.25533 0.96812 0.99199 0.95433 1.69970 1.46631 1.41878 0.98661 0.86031 0.79933 0.80457 0.77072 1.18449 1.22121 1.18971 1.46008 1.64433 1.14522 1.09007 1.21754 0.77313 0.87372 0.86194 1.90629 1.53503 1.17835 1.85496 1.22460 0.95476 1.00182 0.86195 0.84033 1.22858 0.93438 1.05821 0.94497 1.23682 0.88002 1.03386 1.00325 0.81810 1.20484 0.89777 0.75789 0.73331 1.93180 1.96893 1.52744 1.74803 1.93197 1.69807 1.64213 1.89251 1.93192 1.94955 1.92899 1.35144 1.22985 0.87615 0.95631 1.01700 1.62384 1.17336 1.28076 1.21106 0.94235 0.93518 0.91395 0.92059 0.75338 0.91886 0.85606 0.86218 0.93846 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.49 8.96 71.98 0.65 -5.84 16 2 C 0.24 10.98 2.15 44.24 0.10 11.08 16 3 H 0.02 1.02 6.63 -2.39 -0.02 1.00 16 4 C -0.53 -28.18 9.31 25.60 0.24 -27.94 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 6 C 0.03 1.67 5.45 84.65 0.46 2.13 16 7 N -0.93 -55.09 13.96 21.45 0.30 -54.79 16 8 Si 0.94 44.19 24.37 68.60 1.67 45.86 16 9 H -0.26 -11.43 6.87 99.48 0.68 -10.75 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.26 -12.47 6.53 99.48 0.65 -11.82 16 12 N -0.69 -24.98 5.07 -446.12 -2.26 -27.24 16 13 C 0.49 16.37 6.86 87.66 0.60 16.97 16 14 O -0.59 -24.65 15.26 -3.01 -0.05 -24.70 16 15 C 0.07 1.57 3.90 44.51 0.17 1.75 16 16 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 17 C -0.13 -2.51 5.80 31.78 0.18 -2.33 16 18 C -0.13 -2.13 3.04 -9.41 -0.03 -2.16 16 19 H 0.16 1.60 8.14 -2.38 -0.02 1.58 16 20 C 0.46 8.87 2.77 71.98 0.20 9.07 16 21 F -0.19 -4.80 15.74 44.97 0.71 -4.09 16 22 F -0.18 -3.70 17.23 44.97 0.77 -2.93 16 23 F -0.18 -3.37 17.13 44.97 0.77 -2.60 16 24 C 0.05 0.90 6.83 86.77 0.59 1.50 16 25 N -0.66 -14.41 7.34 -486.19 -3.57 -17.98 16 26 H 0.04 1.72 3.27 -2.39 -0.01 1.71 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.41 12.56 8.54 -92.71 -0.79 11.77 16 31 H 0.06 1.62 7.02 -2.39 -0.02 1.60 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 0.93 7.48 -2.39 -0.02 0.91 16 35 H 0.35 9.30 7.18 -89.70 -0.64 8.65 16 Total: -1.00 -65.94 296.95 1.15 -64.79 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.36 Total: 19.45 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 3.16 Total: 4.23 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -5.53 Total: -100.02 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 9 Polarization: -11.87 SS G_CDS: 2.25 Total: -9.62 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Total: -65.94 1.15 -64.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.564 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds