Wall clock time and date at job start Tue Mar 31 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47306 * 2 1 4 4 O 1.42902 * 109.46891 * 120.00026 * 2 1 3 5 5 C 1.52999 * 109.47018 * 239.99167 * 2 1 3 6 6 H 1.08999 * 109.46833 * 65.00829 * 5 2 1 7 7 N 1.46897 * 109.47852 * 305.00417 * 5 2 1 8 8 C 1.50707 * 109.47119 * 185.00116 * 5 2 1 9 9 O 1.21285 * 119.99884 * 100.00470 * 8 5 2 10 10 N 1.34778 * 120.00008 * 280.00608 * 8 5 2 11 11 C 1.39987 * 119.99868 * 175.48642 * 10 8 5 12 12 C 1.38924 * 120.00298 * 215.12125 * 11 10 8 13 13 C 1.38006 * 119.99844 * 180.02562 * 12 11 10 14 14 C 1.38906 * 120.00227 * 359.97438 * 13 12 11 15 15 O 1.35776 * 119.99807 * 179.97438 * 14 13 12 16 16 C 1.34807 * 117.00314 * 354.66330 * 15 14 13 17 17 H 1.08000 * 119.99645 * 5.02941 * 16 15 14 18 18 C 1.38625 * 120.00508 * 185.03383 * 16 15 14 19 19 N 1.31578 * 120.00589 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99884 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47338 * 89.99787 * 20 18 16 22 22 H 1.48498 * 109.47005 * 210.00260 * 20 18 16 23 23 H 1.48503 * 109.46859 * 329.99739 * 20 18 16 24 24 C 1.38914 * 120.00085 * 0.27572 * 14 13 12 25 25 C 1.37997 * 120.00283 * 359.45320 * 24 14 13 26 26 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47360 * 300.00712 * 1 2 3 28 28 H 1.09001 * 109.47250 * 60.00518 * 1 2 3 29 29 H 0.96698 * 114.00286 * 59.99248 * 4 2 1 30 30 H 1.00895 * 111.00311 * 176.04543 * 7 5 2 31 31 H 1.00906 * 110.99688 * 300.00356 * 7 5 2 32 32 H 0.96996 * 120.00043 * 355.48998 * 10 8 5 33 33 H 1.07999 * 119.99892 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.99676 * 179.97438 * 13 12 11 35 35 H 0.96991 * 119.99930 * 179.97438 * 19 18 16 36 36 H 1.07999 * 119.99524 * 179.71997 * 24 14 13 37 37 H 1.08004 * 120.00332 * 180.27150 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7214 -1.2491 6 1 1.7517 -0.1585 -2.1369 7 7 1.4542 -2.0671 -1.3110 8 6 3.5419 -0.8296 -1.1888 9 8 4.0615 -1.8671 -0.8357 10 7 4.3078 0.2266 -1.5270 11 6 5.6983 0.1582 -1.3811 12 6 6.4142 1.2890 -1.0088 13 6 7.7852 1.2216 -0.8655 14 6 8.4492 0.0229 -1.0931 15 8 9.7980 -0.0432 -0.9526 16 6 10.4444 1.1123 -0.6992 17 1 9.8831 2.0204 -0.5361 18 6 11.8296 1.1350 -0.6480 19 7 12.4605 2.2630 -0.4011 20 14 12.8005 -0.4356 -0.9308 21 1 13.1040 -0.5762 -2.3776 22 1 14.0697 -0.3781 -0.1621 23 1 11.9996 -1.6011 -0.4775 24 6 7.7340 -1.1066 -1.4704 25 6 6.3625 -1.0407 -1.6083 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.7208 -1.5952 1.2330 30 1 1.7246 -2.5405 -2.1600 31 1 1.7071 -2.6093 -0.4984 32 1 3.8954 1.0341 -1.8715 33 1 5.8979 2.2208 -0.8315 34 1 8.3418 2.1008 -0.5764 35 1 13.4296 2.2787 -0.3650 36 1 8.2509 -2.0374 -1.6517 37 1 5.8059 -1.9200 -1.8975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579420388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:57 Heat of formation + Delta-G solvation = -82.478111 kcal Electronic energy + Delta-G solvation = -21427.563672 eV Core-core repulsion = 17977.798327 eV Total energy + Delta-G solvation = -3449.765345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.59675 -39.08993 -37.89259 -36.58259 -34.12526 -33.99172 -32.34000 -30.61612 -30.32677 -28.65183 -26.44969 -25.10594 -22.56526 -22.28484 -21.14591 -20.19066 -18.13258 -17.85509 -17.43339 -17.27962 -16.75338 -16.01028 -15.38505 -14.87070 -14.60671 -14.54685 -14.01536 -13.85575 -13.75023 -13.66204 -13.02498 -12.83952 -12.62056 -12.34046 -12.28646 -12.11916 -11.84681 -11.68692 -11.20151 -10.99157 -10.80189 -10.48387 -10.25535 -10.19762 -9.67242 -9.40416 -9.06512 -8.79369 -8.31803 -7.08893 -6.43020 -4.08962 1.94586 2.08929 2.64371 3.17732 3.23206 3.25671 3.41091 3.97061 4.09240 4.23319 4.38227 4.48295 4.59568 4.74531 4.87108 4.93293 5.05682 5.08916 5.46718 5.46898 5.65232 5.68718 5.92417 6.01880 6.08446 6.15599 6.49494 6.64631 6.72110 6.88142 6.90198 7.04080 7.20500 7.32458 7.54919 7.57932 7.76807 8.00561 8.21243 8.92289 9.54546 10.64543 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041556 B = 0.003342 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.622427 B = 8377.165767 C = 8689.053451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 H 0.104 0.896 4 O -0.554 6.554 5 C 0.040 3.960 6 H 0.110 0.890 7 N -0.816 5.816 8 C 0.482 3.518 9 O -0.528 6.528 10 N -0.657 5.657 11 C 0.042 3.958 12 C -0.090 4.090 13 C -0.206 4.206 14 C 0.153 3.847 15 O -0.216 6.216 16 C -0.390 4.390 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.179 4.179 25 C -0.070 4.070 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.375 0.625 30 H 0.350 0.650 31 H 0.348 0.652 32 H 0.402 0.598 33 H 0.113 0.887 34 H 0.138 0.862 35 H 0.280 0.720 36 H 0.120 0.880 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.220 -3.850 -2.986 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.056 3.944 3 H 0.122 0.878 4 O -0.359 6.359 5 C -0.077 4.077 6 H 0.128 0.872 7 N -0.347 5.347 8 C 0.267 3.733 9 O -0.404 6.404 10 N -0.301 5.301 11 C -0.051 4.051 12 C -0.111 4.111 13 C -0.226 4.226 14 C 0.101 3.899 15 O -0.121 6.121 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.199 4.199 25 C -0.090 4.090 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.223 0.777 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.236 0.764 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.940 -3.732 -2.567 22.402 hybrid contribution 1.108 -0.719 -0.436 1.391 sum -20.831 -4.451 -3.002 21.512 Atomic orbital electron populations 1.22348 0.94762 1.03751 1.02260 1.21897 0.94179 0.95837 0.82521 0.87823 1.86669 1.77061 1.29159 1.43045 1.22368 0.88812 0.94422 1.02073 0.87218 1.59181 1.62749 1.03537 1.09203 1.21783 0.90535 0.84121 0.76904 1.90688 1.74498 1.28892 1.46334 1.43308 1.05566 1.17338 1.63902 1.17342 0.81551 0.95795 1.10407 1.20549 0.93953 0.96775 0.99787 1.21101 0.93760 0.99198 1.08529 1.19150 0.84047 0.93293 0.93441 1.83581 1.14831 1.34916 1.78753 1.20760 0.90488 0.86010 1.49261 0.87622 1.24462 0.95571 0.98200 0.95743 1.69651 1.09699 1.25505 1.46893 0.86180 0.78905 0.83065 0.78774 1.19866 1.20766 1.18305 1.20144 0.93084 0.97677 1.09006 1.20694 0.92871 0.96793 0.98615 0.90769 0.92043 0.91619 0.77671 0.83685 0.83791 0.76388 0.86871 0.84454 0.91030 0.86171 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.32 37.16 0.35 -0.76 16 2 C 0.12 0.95 3.49 -26.73 -0.09 0.85 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 4 O -0.55 -6.05 12.81 -35.23 -0.45 -6.50 16 5 C 0.04 0.32 3.09 -68.86 -0.21 0.11 16 6 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 7 N -0.82 -6.05 7.99 -5.65 -0.05 -6.09 16 8 C 0.48 6.09 6.43 -10.98 -0.07 6.02 16 9 O -0.53 -8.64 13.69 5.55 0.08 -8.56 16 10 N -0.66 -8.41 5.34 -9.82 -0.05 -8.46 16 11 C 0.04 0.72 6.30 -83.62 -0.53 0.19 16 12 C -0.09 -1.61 9.96 -39.41 -0.39 -2.01 16 13 C -0.21 -4.42 9.16 -39.42 -0.36 -4.78 16 14 C 0.15 3.59 6.65 -39.08 -0.26 3.33 16 15 O -0.22 -5.75 8.58 0.03 0.00 -5.75 16 16 C -0.39 -10.99 9.94 30.88 0.31 -10.68 16 17 H 0.11 3.02 5.43 -52.49 -0.28 2.73 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 19 N -0.88 -25.40 13.96 55.48 0.77 -24.62 16 20 Si 0.91 21.80 28.62 -169.99 -4.86 16.93 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.18 -3.75 9.98 -39.42 -0.39 -4.14 16 25 C -0.07 -1.32 8.69 -39.41 -0.34 -1.66 16 26 H 0.07 0.49 7.47 -51.93 -0.39 0.10 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.38 3.13 7.71 45.56 0.35 3.48 16 30 H 0.35 2.52 9.06 -39.29 -0.36 2.17 16 31 H 0.35 2.74 7.26 -39.29 -0.29 2.45 16 32 H 0.40 3.66 8.82 -40.82 -0.36 3.30 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.14 3.05 5.63 -52.49 -0.30 2.76 16 35 H 0.28 7.45 8.31 -40.82 -0.34 7.12 16 36 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.13 2.35 6.22 -52.48 -0.33 2.02 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -32.87 315.43 -5.52 -38.39 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -3.62 Total: 11.75 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.10 Total: -11.85 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.68 Total: -39.17 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.38 Total: -20.81 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.87 -5.52 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579420388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.091 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds