Wall clock time and date at job start Tue Mar 31 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47306 * 2 1 4 4 O 1.42902 * 109.46891 * 120.00026 * 2 1 3 5 5 C 1.52999 * 109.47018 * 239.99167 * 2 1 3 6 6 H 1.08999 * 109.46833 * 65.00829 * 5 2 1 7 7 N 1.46897 * 109.47852 * 305.00417 * 5 2 1 8 8 C 1.50707 * 109.47119 * 185.00116 * 5 2 1 9 9 O 1.21285 * 119.99884 * 100.00470 * 8 5 2 10 10 N 1.34778 * 120.00008 * 280.00608 * 8 5 2 11 11 C 1.39987 * 119.99868 * 175.48642 * 10 8 5 12 12 C 1.38924 * 120.00298 * 215.12125 * 11 10 8 13 13 C 1.38006 * 119.99844 * 180.02562 * 12 11 10 14 14 C 1.38906 * 120.00227 * 359.97438 * 13 12 11 15 15 O 1.35776 * 119.99807 * 179.97438 * 14 13 12 16 16 C 1.34807 * 117.00314 * 354.66330 * 15 14 13 17 17 H 1.08000 * 119.99645 * 5.02941 * 16 15 14 18 18 C 1.38625 * 120.00508 * 185.03383 * 16 15 14 19 19 N 1.31578 * 120.00589 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99884 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47338 * 89.99787 * 20 18 16 22 22 H 1.48498 * 109.47005 * 210.00260 * 20 18 16 23 23 H 1.48503 * 109.46859 * 329.99739 * 20 18 16 24 24 C 1.38914 * 120.00085 * 0.27572 * 14 13 12 25 25 C 1.37997 * 120.00283 * 359.45320 * 24 14 13 26 26 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47360 * 300.00712 * 1 2 3 28 28 H 1.09001 * 109.47250 * 60.00518 * 1 2 3 29 29 H 0.96698 * 114.00286 * 59.99248 * 4 2 1 30 30 H 1.00895 * 111.00311 * 176.04543 * 7 5 2 31 31 H 1.00906 * 110.99688 * 300.00356 * 7 5 2 32 32 H 0.96996 * 120.00043 * 355.48998 * 10 8 5 33 33 H 1.07999 * 119.99892 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.99676 * 179.97438 * 13 12 11 35 35 H 0.96991 * 119.99930 * 179.97438 * 19 18 16 36 36 H 1.07999 * 119.99524 * 179.71997 * 24 14 13 37 37 H 1.08004 * 120.00332 * 180.27150 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7214 -1.2491 6 1 1.7517 -0.1585 -2.1369 7 7 1.4542 -2.0671 -1.3110 8 6 3.5419 -0.8296 -1.1888 9 8 4.0615 -1.8671 -0.8357 10 7 4.3078 0.2266 -1.5270 11 6 5.6983 0.1582 -1.3811 12 6 6.4142 1.2890 -1.0088 13 6 7.7852 1.2216 -0.8655 14 6 8.4492 0.0229 -1.0931 15 8 9.7980 -0.0432 -0.9526 16 6 10.4444 1.1123 -0.6992 17 1 9.8831 2.0204 -0.5361 18 6 11.8296 1.1350 -0.6480 19 7 12.4605 2.2630 -0.4011 20 14 12.8005 -0.4356 -0.9308 21 1 13.1040 -0.5762 -2.3776 22 1 14.0697 -0.3781 -0.1621 23 1 11.9996 -1.6011 -0.4775 24 6 7.7340 -1.1066 -1.4704 25 6 6.3625 -1.0407 -1.6083 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.7208 -1.5952 1.2330 30 1 1.7246 -2.5405 -2.1600 31 1 1.7071 -2.6093 -0.4984 32 1 3.8954 1.0341 -1.8715 33 1 5.8979 2.2208 -0.8315 34 1 8.3418 2.1008 -0.5764 35 1 13.4296 2.2787 -0.3650 36 1 8.2509 -2.0374 -1.6517 37 1 5.8059 -1.9200 -1.8975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579420388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:57 Heat of formation + Delta-G solvation = -110.147781 kcal Electronic energy + Delta-G solvation = -21428.763519 eV Core-core repulsion = 17977.798327 eV Total energy + Delta-G solvation = -3450.965192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73682 -40.66750 -38.96466 -37.97850 -35.47001 -34.75103 -34.36377 -31.94425 -31.19727 -30.08516 -27.65512 -26.72554 -24.02816 -23.47892 -22.35334 -21.31069 -19.87759 -19.22176 -18.85289 -18.13708 -18.01799 -16.85521 -16.59576 -16.28738 -16.03674 -15.68370 -15.51558 -15.36862 -15.14330 -14.60025 -14.50470 -14.18447 -14.08701 -13.67121 -13.45679 -13.30328 -13.22533 -12.77760 -12.65167 -12.56030 -12.02245 -11.79903 -11.45935 -11.36444 -11.13055 -11.04009 -10.67927 -9.95167 -9.83469 -8.70684 -8.50812 -6.22279 0.43204 0.47380 1.30905 1.33771 1.50972 1.54993 2.11734 2.27518 2.74007 3.01875 3.12379 3.33711 3.40918 3.73252 3.82056 4.00662 4.07662 4.17688 4.34874 4.42979 4.49811 4.56899 4.70309 4.98915 5.04346 5.11622 5.15197 5.34583 5.44548 5.47272 5.51137 5.73438 5.86402 5.88964 6.16503 6.28246 6.49192 6.70567 6.83646 7.16494 7.57414 8.60526 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041556 B = 0.003342 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.622427 B = 8377.165767 C = 8689.053451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 H 0.110 0.890 4 O -0.581 6.581 5 C 0.054 3.946 6 H 0.143 0.857 7 N -0.808 5.808 8 C 0.479 3.521 9 O -0.565 6.565 10 N -0.649 5.649 11 C 0.070 3.930 12 C -0.086 4.086 13 C -0.215 4.215 14 C 0.113 3.887 15 O -0.244 6.244 16 C -0.399 4.399 17 H 0.086 0.914 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.267 1.267 23 H -0.266 1.266 24 C -0.179 4.179 25 C -0.076 4.076 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.383 0.617 30 H 0.353 0.647 31 H 0.345 0.655 32 H 0.424 0.576 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.285 0.715 36 H 0.127 0.873 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.284 -4.393 -3.868 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 H 0.128 0.872 4 O -0.388 6.388 5 C -0.062 4.062 6 H 0.161 0.839 7 N -0.338 5.338 8 C 0.266 3.734 9 O -0.443 6.443 10 N -0.296 5.296 11 C -0.024 4.024 12 C -0.106 4.106 13 C -0.235 4.235 14 C 0.064 3.936 15 O -0.152 6.152 16 C -0.476 4.476 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.191 1.191 24 C -0.198 4.198 25 C -0.096 4.096 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.232 0.768 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.263 0.737 33 H 0.170 0.830 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.091 -4.265 -3.472 25.687 hybrid contribution 1.635 -0.584 -0.185 1.746 sum -23.457 -4.850 -3.657 24.230 Atomic orbital electron populations 1.22269 0.93164 1.03861 1.02985 1.22097 0.95369 0.95812 0.81503 0.87187 1.86636 1.77716 1.30036 1.44449 1.22477 0.84916 0.95288 1.03539 0.83941 1.59222 1.61867 1.03388 1.09308 1.22802 0.92380 0.83009 0.75187 1.90681 1.75578 1.30404 1.47630 1.43346 1.03490 1.18795 1.63947 1.17493 0.83891 0.94646 1.06406 1.20840 0.92500 0.98712 0.98571 1.21157 0.95440 0.98070 1.08794 1.19597 0.83360 0.95014 0.95630 1.83526 1.16381 1.33943 1.81344 1.20735 0.90990 0.86233 1.49594 0.89676 1.25229 0.96406 1.01245 0.95774 1.69725 1.10246 1.27256 1.49000 0.85262 0.77729 0.78874 0.79144 1.18953 1.19152 1.19076 1.20344 0.93975 0.97227 1.08291 1.20889 0.92098 0.98009 0.98640 0.90955 0.92256 0.89965 0.76779 0.83314 0.84047 0.73738 0.82993 0.86129 0.90546 0.85523 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.32 71.98 0.67 -0.86 16 2 C 0.11 1.44 3.49 30.59 0.11 1.55 16 3 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 4 O -0.58 -11.38 12.81 -148.98 -1.91 -13.29 16 5 C 0.05 0.67 3.09 44.17 0.14 0.81 16 6 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 7 N -0.81 -9.36 7.99 -171.80 -1.37 -10.74 16 8 C 0.48 10.51 6.43 87.66 0.56 11.07 16 9 O -0.56 -17.14 13.69 -3.05 -0.04 -17.18 16 10 N -0.65 -14.14 5.34 -303.37 -1.62 -15.76 16 11 C 0.07 2.22 6.30 38.17 0.24 2.46 16 12 C -0.09 -2.91 9.96 22.38 0.22 -2.68 16 13 C -0.21 -9.35 9.16 22.37 0.20 -9.15 16 14 C 0.11 5.45 6.65 22.59 0.15 5.60 16 15 O -0.24 -13.52 8.58 -22.79 -0.20 -13.72 16 16 C -0.40 -23.59 9.94 67.91 0.68 -22.92 16 17 H 0.09 5.19 5.43 -2.91 -0.02 5.17 16 18 C 0.01 0.70 5.49 84.82 0.47 1.17 16 19 N -0.92 -55.04 13.96 21.61 0.30 -54.74 16 20 Si 0.97 45.98 28.62 68.60 1.96 47.95 16 21 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 24 C -0.18 -7.46 9.98 22.37 0.22 -7.23 16 25 C -0.08 -2.77 8.69 22.38 0.19 -2.58 16 26 H 0.07 0.71 7.47 -2.39 -0.02 0.70 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.38 5.71 7.71 -74.06 -0.57 5.14 16 30 H 0.35 3.96 9.06 -89.70 -0.81 3.15 16 31 H 0.35 4.60 7.26 -89.69 -0.65 3.95 16 32 H 0.42 5.67 8.82 -92.71 -0.82 4.85 16 33 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.12 5.63 5.63 -2.91 -0.02 5.62 16 35 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.14 4.79 6.22 -2.91 -0.02 4.77 16 Total: -1.00 -73.81 315.43 -0.71 -74.53 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -1.70 Total: 25.69 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 3.86 Total: -22.76 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.69 Total: -81.23 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -2.15 Total: -44.18 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.96 Total: 47.95 kcal Total: -73.81 -0.71 -74.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579420388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.621 kcal (2) G-P(sol) polarization free energy of solvation -73.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds